BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489339
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24770.1 | Symbols: VSP2, ATVSP2 | vegetative storage protei... 1463 0.0
AT5G24780.1 | Symbols: VSP1, ATVSP1 | vegetative storage protei... 1086 0.0
> AT5G24770.1 | Symbols: VSP2, ATVSP2 | vegetative storage protein
2 | chr5:8500476-8502224 REVERSE LENGTH=1415
Length=1415
Score = 1463 bits (792), Expect = 0.0
Identities = 975/1060 (92%), Gaps = 25/1060 (2%)
Strand=Plus/Plus
Query 1 TTAAGCACACAGTCTCAACGTGCTCTAAAAACGAGTGGTTCTATGTAAGTGAAAAATATC 60
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 137 TTAAGCACACAATCTCAACGTGCACTAAAAACGAGTGG-----TGTAAGTGAAAAATATC 191
Query 61 GTCGATTATAAACATTATCGGACCAGTAGCATTTGTTGCACCAATCGAAAACACACACA- 119
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct 192 GTCGATTATAAACATTATGGGACCAGTAGCATTTGTTGCACCAATCGAAAACAGACA-AG 250
Query 120 TATACTTATAGCCTCATTTCCCATCTGTCGTCATAAGTAACCA-TACT--T-ACCCCACC 175
| || ||| ||||||||| |||||| | || | ||| || | || | ||||||||
Sbjct 251 CACACATATCTCCTCATTTCTCATCTGGCTTC-T---TAATCATTTCTCATAACCCCACC 306
Query 176 TCATTATAAATACCACCCTTTGTGTCACACAAATAAGCATCACAAACTAAACAATAAACC 235
|||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||
Sbjct 307 TCATTATAAATACCACCCTTTGCGTCACACATATAAACATCACAAACTAAACAATAAACC 366
Query 236 ATATATACCACAAAAAACATGAAAATCCTCTCACTTTCACTTCTCTTGCTCTTGGCCGCT 295
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ----ATACCATAAAAAACATGAAAATCCTCTCACTTTCACTTCTCTTGCTCTTGGCCGCT 422
Query 296 ACGGTCTCGGCATCCGTTCCAGAGCTCATCGAACTCGTCGAATCGAACACCATCTTTGGG 355
|||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||
Sbjct 423 ACGGTCTCGGCATCCGTTCCAGGGCTCATCGAACTCGTCGATTCGAAAACCATCTTTGGG 482
Query 356 AACGAAGCCGAACTCTTAGAGAAAGAGAAACTTACCATCAACTAC-CACAACTGCAGAAG 414
|||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 483 AACGTAGCCGAACTCTTAGAGAAAGAGAAACTTTCCATCAACTACGC-CAACTGCAGAAG 541
Query 415 CTGGCACCTTGGTGTTGAGACCTCTAACATCATAGACTTCGACACCGTGCCCGCAAATTG 474
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 542 CTGGCACCTTGGTGTTGAGACCTCTAACATCATAGACTTCGACACGGTGCCCGCAAATTG 601
Query 475 CAAAGACTATGTTGAAGACTACTTGATCACTTCCAAACAGTACCAAT-CTGACTCCAAAA 533
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 602 CAAAGACTATGTTGAAGACTACTTGATCACTTCCAAACAGTACCAATAC-GACTCCAAAA 660
Query 534 CGGTGTGCAAAGAGGCTTATTTCTACGCCAAAGGACTTGCCCTAAAGAACGATACCGTCA 593
| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 661 CCGTGTGCAAAGAGGCTTATTTCTATGCCAAAGGACTTGCCCTAAAGAACGACACCGTCA 720
Query 594 ATGTTTGGATCTTTGACCTAGACGACACTCTCCTCTCTAGTATCCCCTACTACGCCAAAT 653
|||||||||||||||||||||| || || |||||||||||||| ||||||||||| ||||
Sbjct 721 ATGTTTGGATCTTTGACCTAGATGATACCCTCCTCTCTAGTATTCCCTACTACGCAAAAT 780
Query 654 ATGGATACGGGACACAGAAGACCGACCCGGGAGCATACTGGTTGTGGTTAGGGACCGGAG 713
|||||||||| ||| |||||||||||||||| || |||||||||||||||||||||||||
Sbjct 781 ATGGATACGGAACAGAGAAGACCGACCCGGGGGCGTACTGGTTGTGGTTAGGGACCGGAG 840
Query 714 CATCAACTCCCGGG-CTTCCGGAGACTTTGCTTCTATACCAAAACCTCTTAGAACTCGGG 772
||||||| ||| || || |||||| | |||| ||| ||||||||| || |||| ||||||
Sbjct 841 CATCAAC-CCCTGGACTCCCGGAGGCCTTGCATCTTTACCAAAACATCATAGAGCTCGGG 899
Query 773 ATTGAACCCATCATACTCAGTGACCGTTGGAAATTGTGGAAGAATGTCACTCTCGAGAAT 832
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 900 ATTGAACCCATCATACTCAGTGACCGTTGGAAGTTGTGGAAGAATGTCACTCTCGACAAT 959
Query 833 CTTGAGGCTGCTGGTGTGACCTACTGGAAGCATCTCATATTAAAGCCAAACGGTTCGAAA 892
|| || |||||||| |||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 960 CTCGAAGCTGCTGGCGTGACCTACTGGAAGCATCTCATATTGAAGCCTAATGGTTCGAAC 1019
Query 893 TTGAGGCAAGTGGTGTACAAGTCAAAGGTGAGGAAGAGCCTGGTGAAGAAAGGATACAAC 952
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1020 TTGAGGCAAGTGGTGTACAAGTCAAAGGTGAGGAAGAGTCTCGTGAAGAAAGGATACAAC 1079
Query 953 ATCGTTGGCAATATTGGAGACCAATGGGCTGATTTGGTTGAGGATACTCCTGGAAGGGTT 1012
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 1080 ATCGTTGGCAATATCGGAGATCAATGGGCTGATTTGGTTGAGGATACCCCTGGGAGGGTT 1139
Query 1013 TTTAAGCTCCCAAATCCACTCTACTACGTACCTTCTTAAG 1052
||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTTAAGCTCCCAAATCCACTCTACTACGTACCTTCTTAAG 1179
Score = 510 bits (276), Expect = 1e-143
Identities = 321/343 (94%), Gaps = 2/343 (1%)
Strand=Plus/Plus
Query 1050 AAGTGGTGTACAAGTCAAAGGTGAGGAAGAGCCTGGTGAAGAAAGGATACAACATCGTTG 1109
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1027 AAGTGGTGTACAAGTCAAAGGTGAGGAAGAGTCTCGTGAAGAAAGGATACAACATCGTTG 1086
Query 1110 GGAATATTGGAGACCAATGGGCTGATTTGGTTGAGGATACTCCTGGAAGGGTCTTTAAGC 1169
| ||||| ||||| |||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 1087 GCAATATCGGAGATCAATGGGCTGATTTGGTTGAGGATACCCCTGGGAGGGTTTTTAAGC 1146
Query 1170 TCCCAAATCCACTCTACTACGTACCTTCTTAAGTATCTATGTTCATGGCTTTGTCCCCTT 1229
||||||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||
Sbjct 1147 TCCCAAATCCACTCTACTACGTACCTTCTTAAGAATCTATCTTCATCGCATTGTCCCCTT 1206
Query 1230 GTATCCACTCCATATCTATGTC-TTTCCGTTTATCTTTATAGCCGTTTTGGCACCGCTGC 1288
|||| |||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||
Sbjct 1207 GTATACACTTCATATCTATGTCGTTT-CGTTTATCTTTGTAGCCGTTTTGGCACCGCTGC 1265
Query 1289 ATAAATAAAATGTCTATCCTATCGTAACTTAATAAGAACAAAGACTTCGTACTAAATGTT 1348
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1266 ATAAATAAAATGTCTATCCTATCGTAACTTAATAAGTACAAAGACTTCGTACTAAATGTT 1325
Query 1349 GTTTTTCTTTATAGGGATAATTAATCAAGTGGCCATGAAATGA 1391
||||||||||| |||| | |||||| |||||||||||||||||
Sbjct 1326 GTTTTTCTTTAAAGGGGTCATTAATTAAGTGGCCATGAAATGA 1368
> AT5G24780.1 | Symbols: VSP1, ATVSP1 | vegetative storage protein
1 | chr5:8507590-8508957 REVERSE LENGTH=1074
Length=1074
Score = 1086 bits (588), Expect = 0.0
Identities = 797/893 (89%), Gaps = 34/893 (4%)
Strand=Plus/Plus
Query 181 ATA-AATACCACCCTTTGTGTCACACAAATAAGCATCACAAACTAAACAATAAACCATAT 239
||| |||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 1 ATATAATACCACCCTTTGTGTCACACAAATAAACACCATAAACTAAACAATAAACC---- 56
Query 240 ATACCACAAAAAACATGAAAATCCTCTCACTTTCACTTCTCTTGCTCTT-G--GC--C-G 293
||| || |||||| ||||||||||||||||||||||| ||||||||||| | || | |
Sbjct 57 ATA-CA-AAAAAATATGAAAATCCTCTCACTTTCACTACTCTTGCTCTTGGCCGCTACGG 114
Query 294 -CT---ACG----GTC-TCGGCATCCGTTCCAGAGCTCATCGAACTCGTCGAATCGAACA 344
|| ||| ||| |||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 115 TCTCCCACGTCCAGTCTTCGGCATCCGTTCCAGGGCTCATCGAACTCCTCGAATCGAACA 174
Query 345 CCATCTTTGGGAACGAAGCCGAACTCTTAGAGAAAGAGAAACT-TACCATCAACTACCAC 403
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |
Sbjct 175 CCATCTTTGGGAACGAAGCCGAACTCTTAGAGAAAGAGGGACTGT-CCATCAACTACCCC 233
Query 404 AACTGCAGAAGCTGGCACCTTGGTGTTGAGACCTCTAACATCATAGACTTCGACACCGTG 463
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 234 AACTGCAGAAGCTGGCACCTTGGTGTTGAGACCTCTAACATCATAAACTTCGACACGGTG 293
Query 464 CCCGCAAATTGCAAAGACTATGTTGAAGACTACTTGATCACTTCCAAACAGTACCAAT-C 522
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 294 CCCGCAAATTGCAAAGCCTATGTTGAAGACTACTTGATCACTTCCAAACAGTACCAATAC 353
Query 523 TGACTCCAAAACGGTGTGCAAAGAGGCTTATTTCTACGCCAAAGGACTTGCCCTAAAGAA 582
||||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 354 -GACTCCAAAACTGTAAACAAAGAGGCATATTTTTACGCCAAAGGACTTGCCCTAAAGAA 412
Query 583 CGATACCGTCAATGTTTGGATCTTTGACCTAGACGACACTCTCCTCTCTAGTATCCCCTA 642
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 413 CGATACCGTCAATGTTTGGATCTTTGACCTAGACGACACTCTCCTCTCTAGTATTCCCTA 472
Query 643 CTACGCCAAATATGGATACGGGACAC-AGAAGACCGACCCGGGAGCATACTGGTTGTGGT 701
|||||| ||||||||||| ||||| | |||| || | |||||| || ||||||| |||||
Sbjct 473 CTACGCTAAATATGGATATGGGAC-CGAGAACACAGCCCCGGGGGCGTACTGGTCGTGGT 531
Query 702 TAGGGACCGGAGCATCAACTCCCGGGCTTCCGGAGACTTTGCTTCTATACCAAAACCTCT 761
||| | |||||| ||||||||| || || |||||||| |||| ||||||| |||||||||
Sbjct 532 TAGAGTCCGGAGAATCAACTCCAGGACTCCCGGAGACCTTGCATCTATACGAAAACCTCT 591
Query 762 TAGAACTCGGGATTGAACCCATCATACTCAGTGACCGTTGG---AAATTGTGGAAGAATG 818
| |||||||||||||||||||||||| || |||| | ||| ||||||| |||| |
Sbjct 592 TGGAACTCGGGATTGAACCCATCATAATCTCTGACAGATGGAAAAAATTGT--CAGAA-G 648
Query 819 TCACTCTCGAGAATCTTGAGGCTGCTGGTGTGACCTACTGGAAGCATCTCATATTAAAGC 878
||||| |||||||||| |||||| |||||| || | ||||||||||||||| | ||||
Sbjct 649 TCACTGTCGAGAATCTCAAGGCTGTTGGTGTAACAAAATGGAAGCATCTCATACTCAAGC 708
Query 879 CAAACGGTTCGAAATTGAGGCAAGTGGTGTACAAGTCAAAGGTGAGGAAGAGCCTGGTGA 938
||||||| ||||| |||| |||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 709 CAAACGGATCGAAGTTGACGCAAGTGGTGTACAAGTCAAAGGTTAGGAATAGCCTTGTGA 768
Query 939 AGAAAGGATACAACATCGTTGGCAATATTGGAGACCAATGGGCTGATTTGGTTGAGGATA 998
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 769 AGAAAGGGTACAACATCGTTGGGAATATTGGAGACCAATGGGCTGATTTGGTTGAGGATA 828
Query 999 CTCCTGGAAGGGTTTTTAAGCTCCCAAATCCACTCTACTACGTACCTTCTTAA 1051
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 CTCCTGGAAGGGTTTTTAAGCTCCCAAATCCACTCTACTACGTACCTTCTTAA 881
Score = 462 bits (250), Expect = 3e-129
Identities = 315/346 (91%), Gaps = 6/346 (2%)
Strand=Plus/Plus
Query 1050 AAGTGGTGTACAAGTCAAAGGTGAGGAAGAGCCTGGTGAAGAAAGGATACAACATCGTTG 1109
|||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||
Sbjct 730 AAGTGGTGTACAAGTCAAAGGTTAGGAATAGCCTTGTGAAGAAAGGGTACAACATCGTTG 789
Query 1110 GGAATATTGGAGACCAATGGGCTGATTTGGTTGAGGATACTCCTGGAAGGGTCTTTAAGC 1169
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 790 GGAATATTGGAGACCAATGGGCTGATTTGGTTGAGGATACTCCTGGAAGGGTTTTTAAGC 849
Query 1170 TCCCAAATCCACTCTACTACGTACCTTCTTAAGTA----TCTATGTTCATGGCTTTGTCC 1225
|||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||
Sbjct 850 TCCCAAATCCACTCTACTACGTACCTTCTTAATTAAGCATCTATCTTCATGGCATTGTCC 909
Query 1226 CCTTGTATCCACTCCATATCTATGTC-TTTCCGTTTATCTTTATAGCCGTTTTGGCACCG 1284
||||||||||| | |||||||||||| |||| |||||||||| ||||||||||||||||
Sbjct 910 CCTTGTATCCATTTCATATCTATGTCGTTTC-GTTTATCTTTGTAGCCGTTTTGGCACCA 968
Query 1285 CTGCATAAATAAAATGTCTATCCTATCGTAACTTAATAAGAACAAAGACTTCGTACTAAA 1344
|||| ||||||||||| | |||||||| ||||| |||||| |||| ||||||||||||||
Sbjct 969 CTGCTTAAATAAAATGCCAATCCTATCATAACTCAATAAGTACAACGACTTCGTACTAAA 1028
Query 1345 TGTTGTTTTTCTTTATAGGGATAATTAATCAAGTGGCCATGAAATG 1390
| ||||||||| ||| |||||| ||||||||||| ||||||||||
Sbjct 1029 TTTTGTTTTTCGTTAAAGGGATCATTAATCAAGTTTCCATGAAATG 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68523743925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5