BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489345 Length=1218 Score E Sequences producing significant alignments: (Bits) Value AT5G24820.1 | Symbols: | Eukaryotic aspartyl protease family p... 1853 0.0 > AT5G24820.1 | Symbols: | Eukaryotic aspartyl protease family protein | chr5:8523406-8525297 FORWARD LENGTH=1224 Length=1224 Score = 1853 bits (1003), Expect = 0.0 Identities = 1134/1197 (95%), Gaps = 10/1197 (1%) Strand=Plus/Plus Query 26 TTCTTCTTCTGCTCCTCTTCA-TAGTACTAACTCATAACTCTAGCCTTGAAGATGATCTC 84 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 32 TTCTTCTTCTGCTCCTCTTCACT-GTACTAACTCATAACTCTAGCCTTGAAGATGATCTC 90 Query 85 CCGAATGATATACCAAACGGCTTCTACTTACCTTTCGAATCTAATCTTTACGTTGAGATC 144 |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||| Sbjct 91 CCGAATGATATACCGAACGGCTTTTTCTTACCTTTCGAATCTAATCTTTACGTTGAGATC 150 Query 145 ACCATTGGAACCCCAACGCGAACCTTTAACCTCAAACTAGACTCGTCTACACATCTCACA 204 ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 151 ACCATTGGAACCCCAACACGAACCTTTAACCTCAAGCTAGACTCTTCTACACATCTCACA 210 Query 205 TGCCTTGATAATGATGATGACCACCAATGCTCACTCTCAGACAAATCTTCCAACACTTTC 264 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 211 TGCCTCGATAATGATGATGACCACCAATGCTCCCTCTCAGACAAATCTTCCAACACTTTC 270 Query 265 TCTACAATCTCTTGCAATAACTCTTCTCTTTGTCCTCATGTCTCCACCAATTCCACTAAC 324 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 271 TCTACAATCTCTTGCAATAACTCTTCTCTTTGTCCTCATGTCTCCACCAATTACACTAAC 330 Query 325 CATTTcaacacaacaacaacgaaa-acaacaacTTCTCTATCTCTTCTCTGCACTCCTTC 383 |||||||| |||||||||| ||| |||||||||||| | |||||||||||||||||||| Sbjct 331 TATTTCAACGCAACAACAAC-AAACACAACAACTTCTGTCTCTCTTCTCTGCACTCCTTC 389 Query 384 CGATTTCTGCCGCTACGAGGCCTCTCCCTCTAGCTCCGGCTACCTTGTCTCCGACACACT 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 390 CGATTTCTGCCGCTACGAGGCCTCTCCCTCTAGCTCCGGCTACCTTGTCTCCGACACACT 449 Query 444 TCAGTTAACTTCCTCAATCACCGACCAAGAAAACTCTCTCTCCATAGCT-CGAGGGTTTG 502 |||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| Sbjct 450 TCAGTTAACTTCCTCAATCACCGACCAAGAAAACTCTCTCTCTATAG-TGCGAGGGTTTG 508 Query 503 TCTTTGGCTGCGGGGCTAGTAACCGTGCGACGCCGGAGGAAGACGGAGGAGGCGTCGATG 562 ||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| | Sbjct 509 TCTTTGGCTGCGGGGCTAGAAACCGTGCGACGCCGGAGGAAGACGGTGGTGGCGTCGACG 568 Query 563 GGAGA-TTGAGTCTAACAACTCATCGTTTCTCTTTCCTCTCTCAGCTTCGTCTCACAAGA 621 ||||| || |||||||| ||||| |||||||| ||||||||||||| |||||||||||| Sbjct 569 GGAGACTT-AGTCTAACGACTCACCGTTTCTCGCTCCTCTCTCAGCTACGTCTCACAAGA 627 Query 622 TTTTCACATTGTCTTTGGCCTTCCTCCGCCGGGTCGCGTAACTACATCCGTCTCGGATCA 681 |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 628 TTTTCACACTGTCTTTGGCCTTCCGCAGCCGGGTCGCGTAACTACATCCGTCTCGGATCA 687 Query 682 GCGGCTTCCTACGGCGGCGATATGGTGTTGGTTCCGATGTTAAACACGACGGGGACGGAA 741 |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 688 GCGGCTTCGTACGGCGGCGATATGGTGTTGGTTCCGATGTTAAACATGACGGGGACGGAA 747 Query 742 GCTTACTCGTATCACGTTGCTCTCTTCGGGATCAGTCTTGCCCAACAGAGAATGAGAAGC 801 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 748 GCTTACTCGTATCACGTTGCTCTCTTCGGGATCAGTCTTGGCCAACAGAGAATGAGAAGC 807 Query 802 AGTGAGACTAGTGGACTAGCAATAGATATCGGAACCTACTACACGAGTCTAGAGCCATCA 861 | ||||| ||||||| |||||||||| | || || |||||||||||||||||||||||| Sbjct 808 AATGAGAGTAGTGGAATAGCAATAGACGTTGGGACTTACTACACGAGTCTAGAGCCATCA 867 Query 862 CTCTACGAGGAGGTGAAAGAAGAGCTAATGGCGCAGATTGGACCAACAGTCGCATACGAA 921 ||||||||||||||||| |||||||||| |||||||||||||||| | |||||||||||| Sbjct 868 CTCTACGAGGAGGTGAAGGAAGAGCTAACGGCGCAGATTGGACCAGCGGTCGCATACGAA 927 Query 922 GTGAACGAACTAATGTGTTTCACAACCGAGGTTGGGTTAGATATAGATTCATTGCCCAAA 981 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 928 GTGAACGAACTAATGTGTTTCACAACCGAGGTTGGGTTAGAGATAGATTCATTGCCTAAA 987 Query 982 CTCACTTTTCATTTCCAAGGAT-ACGATTACACAATCTCAAACAAAGGACTCTATCTCCG 1040 |||||| ||||||||||||||| | |||||||| ||||||||||||||||| ||||||| Sbjct 988 CTCACTCTTCATTTCCAAGGATTA-GATTACACTATCTCAAACAAAGGACTTTATCTCCA 1046 Query 1041 AGACAGCCCATCTTCTCTCTGCACAGCTTTGGTCAGATCATCGATGAAAGATGAGGAAAG 1100 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1047 AGACAGCCCATCTTCTCTCTGCACGGCTTTGGTCAGATCATCGATGAAAGATGAGGAAAG 1106 Query 1101 GATTAATGTGATTGGAGCATCAGCTCTTGTTGATCATGCAGTTGGGTACGACACTTCACA 1160 |||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 1107 GATTAATGTGCTTGGAGCATCAGCTTTTGTTGATCATGCAGTTGGGTATGACACTTCACA 1166 Query 1161 GAGGATGCTTGCCTTTCAACAAAGGGATTGTTTATCCGATTTCGTAGATGGTATGTA 1217 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1167 GAGGATGCTTGCCTTTCAACAAAGGGATTGTTTGGCCGATTTCGTAGATGGTATGTA 1223 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59839049640 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5