BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489345
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24820.1 | Symbols: | Eukaryotic aspartyl protease family p... 1853 0.0
> AT5G24820.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr5:8523406-8525297 FORWARD LENGTH=1224
Length=1224
Score = 1853 bits (1003), Expect = 0.0
Identities = 1134/1197 (95%), Gaps = 10/1197 (1%)
Strand=Plus/Plus
Query 26 TTCTTCTTCTGCTCCTCTTCA-TAGTACTAACTCATAACTCTAGCCTTGAAGATGATCTC 84
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 32 TTCTTCTTCTGCTCCTCTTCACT-GTACTAACTCATAACTCTAGCCTTGAAGATGATCTC 90
Query 85 CCGAATGATATACCAAACGGCTTCTACTTACCTTTCGAATCTAATCTTTACGTTGAGATC 144
|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 91 CCGAATGATATACCGAACGGCTTTTTCTTACCTTTCGAATCTAATCTTTACGTTGAGATC 150
Query 145 ACCATTGGAACCCCAACGCGAACCTTTAACCTCAAACTAGACTCGTCTACACATCTCACA 204
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 151 ACCATTGGAACCCCAACACGAACCTTTAACCTCAAGCTAGACTCTTCTACACATCTCACA 210
Query 205 TGCCTTGATAATGATGATGACCACCAATGCTCACTCTCAGACAAATCTTCCAACACTTTC 264
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 211 TGCCTCGATAATGATGATGACCACCAATGCTCCCTCTCAGACAAATCTTCCAACACTTTC 270
Query 265 TCTACAATCTCTTGCAATAACTCTTCTCTTTGTCCTCATGTCTCCACCAATTCCACTAAC 324
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 271 TCTACAATCTCTTGCAATAACTCTTCTCTTTGTCCTCATGTCTCCACCAATTACACTAAC 330
Query 325 CATTTcaacacaacaacaacgaaa-acaacaacTTCTCTATCTCTTCTCTGCACTCCTTC 383
|||||||| |||||||||| ||| |||||||||||| | ||||||||||||||||||||
Sbjct 331 TATTTCAACGCAACAACAAC-AAACACAACAACTTCTGTCTCTCTTCTCTGCACTCCTTC 389
Query 384 CGATTTCTGCCGCTACGAGGCCTCTCCCTCTAGCTCCGGCTACCTTGTCTCCGACACACT 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 CGATTTCTGCCGCTACGAGGCCTCTCCCTCTAGCTCCGGCTACCTTGTCTCCGACACACT 449
Query 444 TCAGTTAACTTCCTCAATCACCGACCAAGAAAACTCTCTCTCCATAGCT-CGAGGGTTTG 502
|||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 450 TCAGTTAACTTCCTCAATCACCGACCAAGAAAACTCTCTCTCTATAG-TGCGAGGGTTTG 508
Query 503 TCTTTGGCTGCGGGGCTAGTAACCGTGCGACGCCGGAGGAAGACGGAGGAGGCGTCGATG 562
||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |
Sbjct 509 TCTTTGGCTGCGGGGCTAGAAACCGTGCGACGCCGGAGGAAGACGGTGGTGGCGTCGACG 568
Query 563 GGAGA-TTGAGTCTAACAACTCATCGTTTCTCTTTCCTCTCTCAGCTTCGTCTCACAAGA 621
||||| || |||||||| ||||| |||||||| ||||||||||||| ||||||||||||
Sbjct 569 GGAGACTT-AGTCTAACGACTCACCGTTTCTCGCTCCTCTCTCAGCTACGTCTCACAAGA 627
Query 622 TTTTCACATTGTCTTTGGCCTTCCTCCGCCGGGTCGCGTAACTACATCCGTCTCGGATCA 681
|||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 628 TTTTCACACTGTCTTTGGCCTTCCGCAGCCGGGTCGCGTAACTACATCCGTCTCGGATCA 687
Query 682 GCGGCTTCCTACGGCGGCGATATGGTGTTGGTTCCGATGTTAAACACGACGGGGACGGAA 741
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 688 GCGGCTTCGTACGGCGGCGATATGGTGTTGGTTCCGATGTTAAACATGACGGGGACGGAA 747
Query 742 GCTTACTCGTATCACGTTGCTCTCTTCGGGATCAGTCTTGCCCAACAGAGAATGAGAAGC 801
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 748 GCTTACTCGTATCACGTTGCTCTCTTCGGGATCAGTCTTGGCCAACAGAGAATGAGAAGC 807
Query 802 AGTGAGACTAGTGGACTAGCAATAGATATCGGAACCTACTACACGAGTCTAGAGCCATCA 861
| ||||| ||||||| |||||||||| | || || ||||||||||||||||||||||||
Sbjct 808 AATGAGAGTAGTGGAATAGCAATAGACGTTGGGACTTACTACACGAGTCTAGAGCCATCA 867
Query 862 CTCTACGAGGAGGTGAAAGAAGAGCTAATGGCGCAGATTGGACCAACAGTCGCATACGAA 921
||||||||||||||||| |||||||||| |||||||||||||||| | ||||||||||||
Sbjct 868 CTCTACGAGGAGGTGAAGGAAGAGCTAACGGCGCAGATTGGACCAGCGGTCGCATACGAA 927
Query 922 GTGAACGAACTAATGTGTTTCACAACCGAGGTTGGGTTAGATATAGATTCATTGCCCAAA 981
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 928 GTGAACGAACTAATGTGTTTCACAACCGAGGTTGGGTTAGAGATAGATTCATTGCCTAAA 987
Query 982 CTCACTTTTCATTTCCAAGGAT-ACGATTACACAATCTCAAACAAAGGACTCTATCTCCG 1040
|||||| ||||||||||||||| | |||||||| ||||||||||||||||| |||||||
Sbjct 988 CTCACTCTTCATTTCCAAGGATTA-GATTACACTATCTCAAACAAAGGACTTTATCTCCA 1046
Query 1041 AGACAGCCCATCTTCTCTCTGCACAGCTTTGGTCAGATCATCGATGAAAGATGAGGAAAG 1100
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1047 AGACAGCCCATCTTCTCTCTGCACGGCTTTGGTCAGATCATCGATGAAAGATGAGGAAAG 1106
Query 1101 GATTAATGTGATTGGAGCATCAGCTCTTGTTGATCATGCAGTTGGGTACGACACTTCACA 1160
|||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1107 GATTAATGTGCTTGGAGCATCAGCTTTTGTTGATCATGCAGTTGGGTATGACACTTCACA 1166
Query 1161 GAGGATGCTTGCCTTTCAACAAAGGGATTGTTTATCCGATTTCGTAGATGGTATGTA 1217
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1167 GAGGATGCTTGCCTTTCAACAAAGGGATTGTTTGGCCGATTTCGTAGATGGTATGTA 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5