BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489346
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24840.1 | Symbols: | tRNA (guanine-N-7) methyltransferase ... 1243 0.0
> AT5G24840.1 | Symbols: | tRNA (guanine-N-7) methyltransferase
| chr5:8533787-8535043 REVERSE LENGTH=935
Length=935
Score = 1243 bits (673), Expect = 0.0
Identities = 806/870 (93%), Gaps = 10/870 (1%)
Strand=Plus/Plus
Query 1 TGATAATGGATAGTGAGACGAAACCAACCACCTTCAGCAAATCTACGGGGCTTCCTCGGA 60
|||||||||| | |||||||||| ||||||||||||||||||| || ||||||||| |||
Sbjct 65 TGATAATGGACAATGAGACGAAAGCAACCACCTTCAGCAAATCAACAGGGCTTCCTAGGA 124
Query 61 AGAGATTCTACAGAGCAAGAGCTCATAGTAACCCACTTAGTGATTCTCACTTCCCGATAC 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 125 AGAGATTCTACAGAGCAAGAGCTCATAGTAACCCACTTAGCGATTCTCACTTCCCAATCC 184
Query 121 CGATTTCTCCGGCTCATGTCGATTTTTCACTTCACTTTCCCAAATTCGTTGAAGCTGACA 180
| || ||||| ||||||||||| | |||||||||||| ||||||||||||||||||||||
Sbjct 185 CCATATCTCCAGCTCATGTCGACTATTCACTTCACTTCCCCAAATTCGTTGAAGCTGACA 244
Query 181 ACAAAAT-ATCCAAGAAGGTTGAGTTTGCGGATATTGGATGCGGGTTTGGTGGTTTGCTA 239
||||| | || |||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 245 ACAAATTCAT-CAAGAAGGTTGAGTTTGCGGATATCGGATGCGGGTTTGGTGGCCTACTA 303
Query 240 ATTTCCCTTGCGACGCTGTTCCCTGATACTCTAATGATCGGTATGGAGTTGAGAGATAAA 299
|| |||||||||||||| ||||| ||||| |||||||||||||||||| | |||||||||
Sbjct 304 ATCTCCCTTGCGACGCTTTTCCCCGATACGCTAATGATCGGTATGGAGCTCAGAGATAAA 363
Query 300 GTGACGGAATACGTTAAGGAACGGATCTTAGCTTTAAGGAGAACGAGCTCGGAGGGACAG 359
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 364 GTGACGGAGTACGTTAAAGAACGGATCTTAGCTTTAAGGAGAACAAGCTCGGAGGGACAG 423
Query 360 TACGAGAACATCTCTGTTGTTAGGACAAACTCGATGAAGTACATTCCGAATTATTTTGAG 419
|| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 424 TATGAGAACATCTCCGTTGTTAGGACAAACTCGATGAAGTACATTCCGAATTACTTCGAG 483
Query 420 AAAGGACAGCTTTCGAAGATGTTTTTCCTCTTCCCTGATCCACATTTCAAGGAGAAGAAT 479
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 484 AAAGGACAGCTTTCGAAGATGTTTTTCCTCTTCCCTGATCCACATTTTAAGGAGAAGAAT 543
Query 480 CACAGGAGGAGAGTGATTAGTACTCATTTGTTAGATGAGTATGCTTATGTTCTTAGAGCT 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 CATAGGAGGAGAGTGATTAGTACTCATTTGTTAGATGAGTATGCTTATGTTCTTAGAGCT 603
Query 540 GGTGGGATTATTTACACAATCACTGATGTGGAGGAGCTTGGAGAGTGGATGAAGGCTTGC 599
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 604 GGTGGGATTATTTACACAATCACTGATGTAGAGGAGCTTGGAGAGTGGATGAAGTCTTGC 663
Query 600 TTAGAGAAGCATCCGATGTTTGAATCACTTACACAAGAAGAGCTTGATTCGGATCCCGTT 659
|||||||| ||||||||||||||||| || |||||||||||||||| ||||||||| |||
Sbjct 664 TTAGAGAAACATCCGATGTTTGAATCTCTAACACAAGAAGAGCTTGTTTCGGATCCTGTT 723
Query 660 GTCGAGCTTCTATGCAGTGCTACTGAGGAAGGACAGAAAGTTGCCAGAAATGGAGGACAG 719
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 724 GTTGAGCTTCTATGCAGTGCTACTGAGGAAGGACAGAAAGTTGCTAGAAATGGTGGACAG 783
Query 720 ACTTTCAGAGCAGTTTTTAGACGCATTGCATATGTTTCTTGAATTCAGTCTTTCTC-TTG 778
|||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 784 ACTTTCAGAGCAGTTTTTAGACGCATTGCATATGTTTCTTGAATTCTTTATTTCTCGTTG 843
Query 779 GTAGTAATCTTATTGTTGTAACAAAAGCTTCTTTCTTAATCTT-AAAATTTTGGGATAGT 837
|||||||||| | ||||||||| | |||||||||||||| || |||||||||||||| |
Sbjct 844 -TAGTAATCTT-T-GTTGTAACACA-GCTTCTTTCTTAAT-TTCAAAATTTTGGGATAAT 898
Query 838 GTTTACAGAAATTTAGAAATTATTCTTCTA 867
|| |||||| || |||||||||| |||||
Sbjct 899 ATT-ACAGAAGTTGAGAAATTATTGTTCTA 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5