BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489351
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24880.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1779 0.0
AT5G10660.2 | Symbols: | calmodulin-binding protein-related | ... 134 3e-30
> AT5G24880.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: calmodulin-binding protein-related (TAIR:AT5G10660.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:8552743-8554074 FORWARD LENGTH=1332
Length=1332
Score = 1779 bits (963), Expect = 0.0
Identities = 1221/1341 (91%), Gaps = 36/1341 (3%)
Strand=Plus/Plus
Query 1 ATGGCAACGACGTCAAGCACGACAAAAGCAAAACCGGATAACCAAAACCTAACCAGAACC 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1 ATGGCAACGACGTCAAGCACGACAAAAGCAAAACCGGACAACCAAAACCTAAGCAGAACA 60
Query 61 AAATCTCTCGGTAGAAAACCAAAGCTACCTTCGTCCACGGGGTCATCAGAAGAT-GG--G 117
||||||||||||||||||||||||| ||||| ||| || | ||||||||||||| || |
Sbjct 61 AAATCTCTCGGTAGAAAACCAAAGCAACCTTTGTCGACTGCGTCATCAGAAGATGGGTCG 120
Query 118 TCTGATCAGAAACCGGAGAAGCCTTTGCCAAACTATTTGAAACCAACAATCAGTTCGAGA 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TCTGATCAGAAACCGGAGAAGCCTTTGCCAAACTATTTGAAACCAACAATCAGTTCAAGA 180
Query 178 CCCGACCCAGTCAAGTTATTGAAGAAGAACAACAGTAGTCTTGATGATAACCAGAAGCTT 237
|||||| ||| |||| | |||||||||||||||| |||||||||||||||||| ||||||
Sbjct 181 CCCGACGCAGGCAAGCTCTTGAAGAAGAACAACAATAGTCTTGATGATAACCAAAAGCTT 240
Query 238 CTTCGTAGAAGATCCTTTGATCGACCTCCTTCTTCTTTGACTTCTCCTTCTACTTCTGCT 297
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCCGTAGAAGATCTTTTGATCGACCTCCTTCTTCTTTGACTTCTCCTTCTACTTCTGCT 300
Query 298 TCTCCGCGTATCCAAAAATCCCTCAACGTATCTCCTTCTCGCTCACGAGATAGACCAGCG 357
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 301 TCTCCGCGTATCCAAAAATCCCTCAACGTCTCTCCTTCTCGCTCACGAGACAGACCAGCG 360
Query 358 TTTCCTAGAGAGAAGCCTGTTACAGCTCAACGCTCTTCGTCTTTCCATGGAAGCAGAGGC 417
|||| |||||||||||||| ||||||| |||||||||||||||||||||||| ||| |
Sbjct 361 GTTCCAAGAGAGAAGCCTGTCACAGCTCTACGCTCTTCGTCTTTCCATGGAAGTAGAAAC 420
Query 418 GTTCCAAGAGGAGGTACTACTGTGAAATCGCCTCCTGTGGCGCCAAAGAAGAGCGGTTTG 477
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTCCAAAAGGAGGTAATACTGCGAAATCGCCTCCTGTGGCGCCAAAGAAGAGCGGTTTG 480
Query 478 AGCAGTAGCAGCACTTCTTCGAAA-AGCAAAAGGGAAGGTTCTGAAAATGTTACAAATAA 536
| |||||||||||||||||| ||| ||||||| |||||| ||||||||||||| | |||
Sbjct 481 AACAGTAGCAGCACTTCTTC-AAAGAGCAAAAAGGAAGGCTCTGAAAATGTTAGGA-TAA 538
Query 537 -GAAAGCATCTGATAAAGAGATTAATGCCTTGGATTCTGCTTCTATGTCGTCTGCTCAGG 595
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 AGAAAGCATCTGATAAAGAGATT---GCCTTGGATTCTGCTTCTATGTCGTCTGCTCAGG 595
Query 596 AGGATCATCAAGAGGAGATTCTGAAGGTTGAGAGTGACCATGTGCAAGTTGCTGATCATA 655
|||||||||||||||||||||| ||||| |||||||| ||| | |||||| ||||||||
Sbjct 596 AGGATCATCAAGAGGAGATTCTCAAGGTCGAGAGTGATCATTTACAAGTTTCTGATCATG 655
Query 656 ATATAGAAGAACCAAAAGATGAAAAACAAGATAAAGAGGTGCAAGAAACGGTTGTGCAAG 715
||||||||||||||||| |||| ||| |||| |||||||| ||||||| |||||| ||||
Sbjct 656 ATATAGAAGAACCAAAATATGAGAAAGAAGAGAAAGAGGTTCAAGAAAAGGTTGTCCAAG 715
Query 716 CCAATGAATCCGTTGAAGAGAAGACTGGGAGTGGTGAACCAACACCGGTTGCTTCTCCTA 775
||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||
Sbjct 716 CCAATGAATCCGTTGAAGAGAAGGCTGAGAGTAGTGGACCAACACCGGTTGCTTCTCCTG 775
Query 776 TTGGGAAAGATTGCAATGCTGTCATCaaagaactagaagaaaaaatgatcaataatgaag 835
||||||||||||||||||||||| || |||| ||||||||||| ||||||| |||||||
Sbjct 776 TTGGGAAAGATTGCAATGCTGTCGTCGCAGAATTAGAAGAAAAATTGATCAAGAATGAAG 835
Query 836 aagaaatcgaagagaaaatagaggaaact-aaagaGCAAGACAATAACCAAGATAACAAG 894
| || ||||||||||||| |||||||| | ||||| |||||||||||||||| |||||
Sbjct 836 ATGATATCGAAGAGAAAACAGAGGAAA-TGAAAGAACAAGACAATAACCAAGCCAACAAA 894
Query 895 GGTGAAGAAGAGGAAGACGTTAAGAAGAAGATCGACGAGAATGAGACACCGGAGAAGGTT 954
||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 895 AGTGAAGAAGAGGAAGACGTTAAGAAGAAGATTGATGAGAATGAGACACCAGAGAAGGTT 954
Query 955 GATATTgaaagcaaaaaagttgaaagtgttgaagaaactacacaagaaaaagaagaagaa 1014
|||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 955 GATACTGAAAGCAAAGAAGTTGAAAGTGTCGAAGAGACTACACAAGAAAAAGAAGAAGAA 1014
Query 1015 g--a--g--gag---aaggagaaagtg-aa-ag-aggag--g-agaaggaaaaggttaaa 1059
| | | ||| ||||||| ||| || || ||||| | |||||||||||||||||
Sbjct 1015 GTGAAAGAAGAGGGGAAGGAGAGGGTGGAAGAGGAGGAGAAGGAGAAGGAAAAGGTTAAA 1074
Query 1060 gaagatgg--aaa-ggagaaggtagaagaggagaaggagaaagaaaaggttaagg---at 1113
||||||| ||| ||||||||| ||||| ||||| |||| ||||||||||||| ||
Sbjct 1075 GAAGATGATCAAAAGGAGAAGGTGGAAGA--AGAAG-AGAAGGAAAAGGTTAAGGGTGAT 1131
Query 1114 gaggagaaggagaaggttaaagaagaagaatcaggagagggaaagaagaaagaagtagtg 1173
||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1132 GAGGAAAAGGAGAAGGTTAAAGAAGAAGAATCAGCAGAGGGAAAGAAGAAGGAAGTAGTG 1191
Query 1174 aaagggaagaaggaaTCTCCATCAGCTTACAACGATGTAATAGCAAGTAAGATGCAAGAG 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 AAAGGGAAGAAGGAATCTCCATCAGCTTACAACGATGTAATAGCAAGTAAGATGCAAGAG 1251
Query 1234 AACCCGAGGAAGAACAAAGTTTTGGCTCTAGCTGGAGCTTTTCAAACTGTTATTGACTAT 1293
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1252 AACCCGAGGAAGAACAAAGTTTTGGCTCTTGCTGGAGCTTTTCAAACCGTTATTGACTAT 1311
Query 1294 GAAACTGCTGCATCTAAGTGA 1314
|||||||||||||||||||||
Sbjct 1312 GAAACTGCTGCATCTAAGTGA 1332
> AT5G10660.2 | Symbols: | calmodulin-binding protein-related
| chr5:3370518-3372348 FORWARD LENGTH=1394
Length=1394
Score = 134 bits (72), Expect = 3e-30
Identities = 104/119 (87%), Gaps = 4/119 (3%)
Strand=Plus/Plus
Query 1134 agaagaagaatcagga-gagggaa-agaagaaagaagtagtgaaagggaagaaggaaTCT 1191
||||||| | || || || |||| | ||||| ||||| ||| |||||||||||||||||
Sbjct 1079 AGAAGAATTACCA-GAGGAAGGAACA-AAGAATGAAGTGGTGCAAGGGAAGAAGGAATCT 1136
Query 1192 CCATCAGCTTACAACGATGTAATAGCAAGTAAGATGCAAGAGAACCCGAGGAAGAACAA 1250
||| |||| |||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1137 CCAACAGCCTACAACGATGTAATAGCAAGTAAGATGCAAGAGAACTCGAAGAAGAACAA 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5