BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489352
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24920.1 | Symbols: AtGDU5, GDU5 | glutamine dumper 5 | chr5... 920 0.0
> AT5G24920.1 | Symbols: AtGDU5, GDU5 | glutamine dumper 5 | chr5:8584665-8585275
FORWARD LENGTH=611
Length=611
Score = 920 bits (498), Expect = 0.0
Identities = 575/611 (94%), Gaps = 10/611 (2%)
Strand=Plus/Plus
Query 1 ATGAGGCAATTTCCAAGCATAAGAGGAAACATAGATGAGAAGATGATGACAAGAATGGTG 60
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1 ATGAGGCAATTTCCAAGCATAAGAGGAAACATAAATGAGAAGATGATGACAACAATGGTG 60
Query 61 GAGTCTCAGACACGGTCTCCGTGGCATACACCGGTTCCTTACCTATTCGGTGGTTTAGCC 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 GAGTCTCAGACACGGTCTCCGTGGCGTACACCGGTTCCTTACCTATTCGGTGGTTTAGCC 120
Query 121 GCCATGCTTGGACTCATAGCATTTGCTCTCTTGTTGCTCGCTTGCTCCTACTGGAAGCTC 180
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||
Sbjct 121 GCCATGCTTGGACTCATAGCCTTTGCTCTCTTGTTGCTCGCCTGCTCCTACTGGAGGCTC 180
Query 181 TCGCGGGGGACAGAAGACGAAGAGAAACAGAAGGAGTCCGGTGAGAAAGTGGTGGCTAAG 240
|||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 TCGCGGCAGACAGAAGATGAAGAGAAACAGACGGAGTCCGGTGAGAAAGTGGTGGCTAAG 240
Query 241 GTTTTTGAGGAGAAGATTCTTGTGATCATGGCTGGACAAAACAACCCTACCTTCTTGGCC 300
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GCTTTTGAGGAGAAGATTCTTGTGATCATGGCTGGACAAAACAACCCTACCTTCTTAGCC 300
Query 301 ACTCCAGTCGCCGCCAAGATTTGCCTGGAATGTGTAAATATGGAGAAGAAAGTAGGGCAA 360
||||| ||||| ||||||||||||||||| ||||| |||||||||||||||| ||| |||
Sbjct 301 ACTCCGGTCGCGGCCAAGATTTGCCTGGATTGTGTTAATATGGAGAAGAAAGAAGGACAA 360
Query 361 AATGGGGAATCTACAGAAACAGAAG-AAA--AC---CTA-TGAGCTCTGTTCTCAAGAGT 413
||||||||||||| || |||||||| ||| || ||| ||||||||||||||||||||
Sbjct 361 AATGGGGAATCTAAAGTAACAGAAGAAAACCACTGACTACTGAGCTCTGTTCTCAAGAGT 420
Query 414 GTACttttttggattctctgtttttgtcggtttgtttgtttgtttgttggggaagtagtt 473
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 GTACTTTTTTGGATTCTCTGTTTTTGTCGGTTTGTTT-TTTGTTTGTTGGGGAAGTAGTT 479
Query 474 ttcctctgttttAATCGACCTTGAGATTGTAAATCTTCATTAGAGTAGTAAATGTGAACC 533
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 TTCCTCTGTTTTTGTCGACCTTGAGATTGTAAATTTTCATTAGAGTAGTAAATGTGAAC- 538
Query 534 AAAAAAGTTGACAAAGTTTCGGGGTTCTATGTATAAATGTTGGTATATGAATATATTTTG 593
||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 539 AAAAAAGTTGAGAAA-TTTCGGGTTTCTATGTATAAATGTTGGTATATGAATATATTTTG 597
Query 594 CTAAATTGAAG 604
||||||| |||
Sbjct 598 CTAAATTAAAG 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29085571113
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5