BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489353
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24930.1 | Symbols: ATCOL4, COL4 | CONSTANS-like 4 | chr5:85... 2017 0.0
AT2G24790.1 | Symbols: COL3, ATCOL3 | CONSTANS-like 3 | chr2:10... 207 2e-52
> AT5G24930.1 | Symbols: ATCOL4, COL4 | CONSTANS-like 4 | chr5:8589234-8591236
FORWARD LENGTH=1599
Length=1599
Score = 2017 bits (1092), Expect = 0.0
Identities = 1310/1407 (93%), Gaps = 48/1407 (3%)
Strand=Plus/Plus
Query 1 AATGCCAAGTAATTTCATCTCAATACAATAAAATTACGTTGTTTGGCTAAGATTTCACCA 60
||||||||||||||||| || | | ||||||||||||||||||||||||||||| ||||
Sbjct 1 AATGCCAAGTAATTTCA--TC-AGA-AATAAAATTACGTTGTTTGGCTAAGATTTTACCA 56
Query 61 CGTGTCAACATTTCATTCGATCTAGATGGATACCCATGGACCCCACATGGATAGACTCAT 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 CGTGTCAACTTTTCATTCGATCTAGATGGATACCCATGGACCCCACATGGATAGACTCAT 116
Query 121 TGACACGCTCATGTGAAGCC-ATAGTAACACCAACCACaaaagaaagaga-a-agagaga 177
|||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 117 TGACACGCTCATGTGAAGCCAATAGTAACACCAACCACAAAAGAAAGAGAGAGAGAGAGA 176
Query 178 ga--g-accct--------------gaa-a--cctagagagagaaaaaTGGCGTCTAAGC 217
| | | | | ||| | ||||||||||||||||||||| ||||
Sbjct 177 CACTGAAACATAGAGAGAAGAAAAAGAAGAGGTTTAGAGAGAGAAAAATGGCGTCAAAGC 236
Query 218 TCTGCGATTCGTGCAAATCGGCGACGGCGGCGTTATACTGCCGACCAGACGCAGCGTTTC 277
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TCTGCGATTCGTGCAAATCAGCGACGGCGGCGTTATACTGCCGACCAGACGCAGCGTTTC 296
Query 278 TATGCTTAAGCTGCGATTCAAAAGTCCACGCGGCGAACAAACTCGCGTCACGACACGCGC 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TATGCTTAAGCTGCGATTCAAAAGTCCACGCGGCGAACAAACTCGCGTCACGACACGCGC 356
Query 338 GCGTGTGGATGTGTGAAGTGTGCGAGCAAGCACCGGCACACGTCACGTGCAAAGCAGACG 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GCGTGTGGATGTGTGAAGTGTGCGAGCAAGCACCGGCACACGTCACGTGCAAAGCAGACG 416
Query 398 CGGCCGCGTTATGCGTCACGTGCGACCGTGATATTCACTCGGCTAATCCGTTAGCTCGCC 457
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 417 CGGCCGCGTTATGCGTCACGTGCGACCGTGATATCCACTCGGCTAATCCGTTAGCTCGCC 476
Query 458 GTCACGAACGCGTTCCCGTTACTCCGTTTTACGATTCCGTCTCTAGTGACGGTTCCGTTA 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GTCACGAACGCGTTCCCGTTACTCCGTTTTACGATTCCGTCTCTAGTGACGGTTCCGTTA 536
Query 518 AACATACCGCCGTTAATTTCCTTGACGACTGTTACTTCTCCGATATAGACGGTAACGGAA 577
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 537 AACACACCGCCGTTAATTTCCTTGACGACTGTTACTTCTCCGATATAGATGGTAACGGAA 596
Query 578 GCCGTGTAGAAGAGGAGGAAGAAGCTGCTTCGTGGCTG---CTTCCGAATCCGAAGACTA 634
|||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 597 GCCGTGAAGAAGAGGAGGAAGAAGCTGCTTCGTGGCTGTTACTTCCCAATCCAAAGACTA 656
Query 635 CGACGGCTGCGACGGCGGGGATGGTTGCTGTTACTGCAGCTGAGGAAGTTCCGGGAGATA 694
| ||| | |||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 657 CAACGACGGCGACGGCGGGGATCGTTGCTGTTACTTCAGCTGAGGAAGTTCCGGGAGATA 716
Query 695 GTCCGGAGATGAACACGGGTCAACAGTATTTGTTCTCGGATCCGGATCCGTATCTGGATC 754
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GTCCGGAGATGAACACTGGTCAACAGTATTTGTTCTCGGATCCGGATCCGTATCTGGATC 776
Query 755 TGGATTACGGGAGTGTTGATCCAAAAGTGGAATCGTTGGAGCAGAATAGCTCCGGTACCG 814
||||||| || | ||||||||| || ||||||||||| |||||||||||||||||||| |
Sbjct 777 TGGATTATGGAAATGTTGATCCGAAGGTGGAATCGTTAGAGCAGAATAGCTCCGGTACTG 836
Query 815 ATGGTGTTGTTCCGGTGGAGAATCGGACGGTTAGGGTTCCGACGGTGAACGAGAATTGCT 874
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 837 ATGGTGTTGTTCCGGTGGAGAATCGGACGGTTAGGATTCCGACGGTGAACGAGAATTGCT 896
Query 875 ATGAAATGGATTTTACCGGAGGATCTAAAGGCTTTGCTTATGGTGGT--T-ACAATTGCA 931
|||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 897 TTGAAATGGATTTTACCGGAGGATCTAAAGGCTTTACTTATGGTGGTGGTTACAATTGCA 956
Query 932 TCAGTCACAGCGTCTCATCATCGTCGATGGAAGTGGGAGTGGTGCCAGATGGTGGCTCTG 991
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 957 TCAGTCACAGCGTGTCATCATCGTCGATGGAAGTGGGAGTGGTGCCAGATGGTGGTTCGG 1016
Query 992 TGGCCGATGTTTCGTATCCTTACGGTGGTCCGGCAACCAGTGGAGCAGATCCCGGAAGC- 1050
|||| ||||| |||||||||||||||||||| |||||||||||||| ||||| || | |
Sbjct 1017 TGGCTGATGTATCGTATCCTTACGGTGGTCCTGCAACCAGTGGAGCTGATCCGGGGA-CA 1075
Query 1051 CAGCGGGCTGTTCCGCTGACTTCAGCTgagagagaggcgagggtaatgaggtacagagag 1110
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1076 CAGCGGGCTGTTCCGCTGACTTCAGCTGAGAGAGAAGCGAGGGTAATGAGGTACAGAGAG 1135
Query 1111 aagaggaagaacaggaagtttgagaagaCGATAAGGTATGCTTCAAGGAAAGCTTATGCG 1170
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1136 AAGAGGAAGAACAGGAAGTTTGAGAAGACTATAAGGTATGCTTCAAGGAAAGCGTATGCG 1195
Query 1171 GAAATGAGACCGAGAATCAAGGGACGGTTTGCGAAGCGGACGGATACAAGTGAGAGCAGT 1230
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1196 GAAATGAGACCGAGAATCAAGGGACGGTTTGCGAAGCGGACGGATACAAATGAGAGCAAT 1255
Query 1231 GATGTGGTTGGTCATGGTGGTATCTTTAGTGGGTTCGGACTTGTACCTACGTTTTAGATA 1290
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1256 GATGTGGTTGGTCATGGTGGTATCTTTAGTGGGTTCGGACTTGTACCTACATTTTAGATA 1315
Query 1291 TTGAGAGAGAAAGATAGAGACTCTAAAAATGGAAG-T--TGG-T--TT-GGTGTTTGTTT 1343
||||||||| || |||||||||||| |||||| | ||| | || |||||||||||
Sbjct 1316 TTGAGAGAGG--GA--GAGACTCTAAAA-TGGAAGATGGTGGGTGGTTTGGTGTTTGTTT 1370
Query 1344 TAGTAATAATGTTTT-AACGAACGttt 1369
||||||||| ||||| |||||||||||
Sbjct 1371 TAGTAATAAGGTTTTTAACGAACGTTT 1397
> AT2G24790.1 | Symbols: COL3, ATCOL3 | CONSTANS-like 3 | chr2:10566898-10568145
FORWARD LENGTH=1145
Length=1145
Score = 207 bits (112), Expect = 2e-52
Identities = 233/290 (80%), Gaps = 14/290 (5%)
Strand=Plus/Plus
Query 209 CGTCTAAG-CTCTGCGATTCGTGCAAATCGGCGACGGCGGCGT-TATACTGCCGAC-CAG 265
|||| ||| || |||||||||||||||||| || | || | | ||| |||||| | |||
Sbjct 72 CGTC-AAGACTTTGCGATTCGTGCAAATCGACGGCAGCAAC-TCTATTCTGCCG-CGCAG 128
Query 266 ACGCAGCGTTTCTATGCTTAAG-CTGCGATTC-AAAAG-TCCACGCGGCGAACAAACTCG 322
|||| |||||||| ||| | |||||| | ||| ||||| | || ||||||||||
Sbjct 129 ACGCCGCGTTTCTCTGC-GGCGACTGCGA--CGGTAAGATCCACACAGCTAACAAACTCG 185
Query 323 CGTCACGACACGCGCGCGTGTGGATGTGTGAAGTGTGCGAGCAAGCACCGGCACACGTCA 382
| ||||| |||| || || ||| | |||||||| ||||| |||||||| ||||||||||
Sbjct 186 CATCACGTCACGAACGAGTTTGGCTATGTGAAGTATGCGAACAAGCACCAGCACACGTCA 245
Query 383 CGTGCAAAGCAGACGCGGCCGCGTTATGCGTCACGTGCGACCGTGATATTCACTCGGCTA 442
|||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 246 CGTGCAAAGCTGACGCCGCTGCGTTATGCGTCACGTGCGACCGTGATATCCACTCAGCTA 305
Query 443 ATCCGTTAGCTCGCCGTCACGAACGCGTTCCCGTTACTCCGTTT-TACGA 491
|||| | ||||||| ||||| ||||| || | ||||| ||| |||||
Sbjct 306 ATCCACTCTCTCGCCGCCACGAGCGCGTACCAATCACTCC-TTTCTACGA 354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71234573355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5