BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489354
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24940.1 | Symbols: | Protein phosphatase 2C family protein... 1580 0.0
AT5G10740.1 | Symbols: | Protein phosphatase 2C family protein... 994 0.0
AT4G31750.1 | Symbols: WIN2 | HOPW1-1-interacting 2 | chr4:1536... 564 9e-160
> AT5G24940.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:8591407-8593601 REVERSE LENGTH=1344
Length=1344
Score = 1580 bits (855), Expect = 0.0
Identities = 968/1023 (95%), Gaps = 5/1023 (0%)
Strand=Plus/Plus
Query 1 ATGGGATATATGGACTTGGCGTTATCGTATTCGAATCAAATGCGGATTGTTGAAGCTCCC 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGATATATGGACTTGGCGTTATCTTATTCGAATCAAATGCGGATTGTTGAAGCTCCC 60
Query 61 GCAAGCGGAGGTGGTCTCAGTCAGAATGGAAAATTCAGCTATGGATATGCAAGCTCAGCT 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GCAAGCGGAGGTGGTCTCAGTCAGAATGGAAAATTTAGCTATGGATATGCAAGCTCAGCT 120
Query 121 GGGAAGAGATCATCTATGGAAGACTTTTTTGAGACTAGGATCGACGGTATCGATGGAGAA 180
|| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GGAAAAAGGTCATCTATGGAAGACTTTTTTGAGACAAGGATCGACGGTATCGATGGAGAA 180
Query 181 ATCGTCGGTCTATTTGGAGTCTTTGATGGACATGGTGGAGCAAGAGCAGCTGAGTATGTG 240
||||| ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 181 ATCGTTGGTCTATTTGGAGTCTTTGATGGTCATGGTGGATCCAGAGCAGCTGAGTATGTG 240
Query 241 AAGCGTCATCTTTTCAGCAATCTTATTACTCATCCTAAGTTCATCTCTGATACCAAATCT 300
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 AAGCGTCACCTTTTCAGCAATCTTATTACTCATCCTAAGTTCATCTCTGACACCAAATCT 300
Query 301 GCAATAGCTGATGCATATACTCATACAGACTCTGAACTTCTCAAGTCAGAAAATAGTCAC 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCAATAGCTGATGCCTATACTCATACAGACTCTGAACTTCTCAAGTCAGAAAATAGTCAT 360
Query 361 ACTAGAGATGCTGGTTCTACTGCTTCCACAGCTATTCTTGTTGGTGATCGTTTACTTGTT 420
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 ACTAGAGATGCTGGTTCAACTGCTTCCACAGCTATTCTCGTTGGTGATCGTTTACTTGTT 420
Query 421 GCTAATGTTGGTGATTCCAGAGCTGTTATATGTCGAGGCGGAAATGCCTTTGCTGTGTCA 480
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 421 GCTAATGTTGGTGATTCCAGAGCTGTTATATGTCGTGGCGGAAATGCATTTGCTGTTTCA 480
Query 481 AGAGACCATAAACCTGACCAAAGTGATGAACGTGAACGGATTGAGAATGCTGGTGGTTTT 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 AGAGACCATAAACCTGACCAAAGTGATGAGCGTGAACGGATTGAGAATGCTGGTGGTTTT 540
Query 541 GTGATGTGGGCAGGGACTTGGAGAGTTGGAGGAGTTCTTGCAGTTTCTCGCGCCTTTGGT 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 541 GTGATGTGGGCAGGGACTTGGAGAGTTGGAGGAGTTCTTGCAGTTTCCCGCGCGTTTGGT 600
Query 601 GATCGATTGCTGAAACAGTATGTTGTTGCTGATCCAGAAATTCAGGAAGAGAAGATTGAT 660
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GATCGATTGCTTAAACAATATGTTGTTGCTGATCCAGAAATTCAGGAAGAGAAGATTGAT 660
Query 661 GATTCTCTTGAATTTCTGATTCTTGCTAGCGATGGACTATGGGATGTTTTCTCCAATGAG 720
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 GATTCTCTTGAGTTTCTGATTCTTGCCAGCGATGGACTATGGGATGTTTTCTCCAATGAG 720
Query 721 GAAGCGGTTGCAGTGGTGAAAGAAGTTGAAGATCCGGAAGAGTCCACCAAGAAACTTGTG 780
||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAAGCAGTTGCAGTAGTAAAAGAAGTTGAAGATCCGGAAGAGTCCACCAAGAAACTTGTG 780
Query 781 GGCGAAGCAATTCGGAGAGGAAGTGCAGACAATATTACATGTGTAGTCGTACGTTTCTTG 840
|| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 GGAGAAGCAATTAAAAGAGGAAGTGCAGACAATATTACATGTGTAGTTGTACGTTTCTTG 840
Query 841 GAGAGCAAGACTGCTAACAACAATGGTTCCAGCTCATCCGAGGAAGCAAATCAAGTTCAA 900
||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 841 GAGAGCAAGTCAGCTAACAACAACGGTTCCAGCTCATCCGAGGAAGCAAATCAAGTGCCA 900
Query 901 ACCGCTGTTAGAAATGACTCAGACCACAAGAACTTAACCAAAGAAACCAATCAAGACCAT 960
||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 901 ACCGCTGTTAGAAATGACTCAGACCACAAGATCTCAGCCAAAGAAACCAATCAAGACCAT 960
Query 961 ATTGCAGTACACAGAG-ACTTGGACTGCAGCAACGCTGACAATGAAAACCTGAACCAAAA 1019
| ||||| ||| || |||||||| | ||||| |||||| | ||| ||||||||||||
Sbjct 961 ACCACAGTAAACA-AGGACTTGGAC--C-GCAACACTGACAGTCAAAGCCTGAACCAAAA 1016
Query 1020 GCC 1022
|||
Sbjct 1017 GCC 1019
Score = 220 bits (119), Expect = 2e-56
Identities = 247/304 (81%), Gaps = 28/304 (9%)
Strand=Plus/Plus
Query 1011 GAACCAAAAGCCAATCGCGGTTACAGCAGCAGGACGCAGCGTTTCTTCAGAACAGAGTGG 1070
||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct 1047 GAACCAAAAACCAATCGCGACTACAGCAACAGGACACAGCGTTTCTTCAGAACAGAGTGG 1106
Query 1071 TTTAGCCGAGGAAAAGAATCAAATGCCAATCGCAATTCGCAGCGGCTCAGATC-TCAAGA 1129
|||| ||| |||||||| ||||||||||||| ||||||||||| |||||| | | ||||
Sbjct 1107 TTTAACCGGGGAAAAGAGTCAAATGCCAATCAAAATTCGCAGCGACTCAGAGCCT-AAGA 1165
Query 1130 GCTCATCAACCAAGGTACCTAATCAAGGGAAAATCACAGTACACAACGA-TTCCGACAGT 1188
| | ||| ||||||||||||||||| | ||| ||||||||||||||| || ||||||
Sbjct 1166 G-T--TCAGCCAAGGTACCTAATCAAACGCAAAGCACAGTACACAACGACTTG-GACAGT 1221
Query 1189 AGCATTGCGAATCAGAAGCCGGTAGCAGCAACACACACCTCTTCCTTAGAACAGAGCGGA 1248
|||| |||||| |||||||| | |||||| ||||||||||||
Sbjct 1222 AGCACTGCGAA---GAAGCCGGC--C-GCAACA---------------GAACAGAGCGGA 1260
Query 1249 TCAACCAGTGAAAAGAATCGAAAATCAATCCAAGTTCATAGCGATTCCCCCGCAAGCAGG 1308
||||| |||||| |||||||||| ||||| |||||||||| |||||| ||||||| | |
Sbjct 1261 TCAACGGGTGAAAGGAATCGAAAACCAATCAAAGTTCATAGTGATTCCGCCGCAAGAAAG 1320
Query 1309 ACAA 1312
||||
Sbjct 1321 ACAA 1324
> AT5G10740.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:3393569-3396200 REVERSE LENGTH=1537
Length=1537
Score = 994 bits (538), Expect = 0.0
Identities = 749/851 (88%), Gaps = 14/851 (2%)
Strand=Plus/Plus
Query 1 ATGGGATA-TATGGACTTGGCGTTATCGTATTCGAATCAAATGCGGATTGTTGAAGCTCC 59
|||||||| | |||||||||| || |||||||| || || || || ||||||||||||
Sbjct 245 ATGGGATACT-TGGACTTGGCCTTGTCGTATTCCAACCAGCCGCAGACTGTTGAAGCTCC 303
Query 60 CGCAAGCGGAGGTGGTCTCAGTCAGAATGGAAAATTCAGCTATGGATATGCAAGCTCAGC 119
|| |||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 304 AGCGAGCGGAGGAGGTCTCAGCCAGAATGGAAAATTTAGCTATGGATATGCAAGCTCCGC 363
Query 120 TGGGAAGAGATCATCTATGGAAGACTTTTTTGAGACTAGGATCGACGGTATCGATGGAGA 179
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 364 TGGCAAGAGATCATCTATGGAAGACTTTTTTGAAACTAGGATCGACGGTATCAATGGAGA 423
Query 180 AATCGTCGGTCTATTTGGAGTCTTTGATGGACATGGTGGAGCAAGAGCAGCTGAGTATGT 239
||| || |||||||||||||| |||||||| ||||||||||| |||||||||||||| ||
Sbjct 424 AATAGTTGGTCTATTTGGAGTTTTTGATGGCCATGGTGGAGCCAGAGCAGCTGAGTACGT 483
Query 240 GAAGCGTCATCTTTTCAGCAATCTTATTACTCATCCTAAGTTCATCTCTGATACCAAATC 299
|||||| ||||||||||| ||||| || || || || ||||| |||||||| ||||||||
Sbjct 484 GAAGCGCCATCTTTTCAGTAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATC 543
Query 300 TGCAATAGCTGATGCATATA-CTCATACAGACTCTGAACTTCTCAAGTCAGAAAATAGTC 358
|| ||| ||||||| |||| | ||||||||||| |||||||||||||||||||||||||
Sbjct 544 AGCTATAACTGATGCTTATAAC-CATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC 602
Query 359 ACACTAGAGATGCTGGTTCTACTGCTTCCACAGCTATTCTTGTTGGTGATCGTTTACTTG 418
||| |||||| |||||||||||||| || |||||||||||||||||||| |||||| |||
Sbjct 603 ACAATAGAGACGCTGGTTCTACTGCGTCTACAGCTATTCTTGTTGGTGACCGTTTAGTTG 662
Query 419 TTGCTAATGTTGGTGATTCCAGAGCTGTTAT-ATGTC-GAGGCGGAAATGCCTTTGCTGT 476
|||| |||||||||||||| ||||||||||| | | | |||||||||| ||| |||||||
Sbjct 663 TTGCAAATGTTGGTGATTCTAGAGCTGTTATCA-G-CAGAGGCGGAAAAGCCATTGCTGT 720
Query 477 GTCAAGAGACCATAAACCTGACCAAAGTGATGAACGTGAACGGATTGAGAATGCTGGTGG 536
|||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 721 GTCAAGGGACCATAAACCGGACCAAAGTGATGAACGTGAAAGGATTGAGAATGCTGGTGG 780
Query 537 TTTTGTGATGTGGGCAGGGACTTGGAGAGTTGGAGGAGTTCTTGCAGTTTCTCGCGCCTT 596
||||||||||||||||| |||||||| || ||||||||||||||||||||||| || ||
Sbjct 781 ATTTGTGATGTGGGCAGGAACTTGGAGGGTAGGAGGAGTTCTTGCAGTTTCTCGTGCGTT 840
Query 597 TGGTGATCGA-TTGCTGAAACAGTATGTTGTTGCTGATCCAGAAATTCAGGAAGAGAAGA 655
||||||||| || ||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct 841 TGGTGATCGGCTT-CTGAAGCAATATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAGA 899
Query 656 TTGATGATTCTCTTGAATTTCTGATTCTTGCTAGCGATGGACTATGGGATGTTTTCTCCA 715
|||||||| ||||||| ||| ||||||| || || |||||||| |||||||||||||| |
Sbjct 900 TTGATGATACTCTTGAGTTTTTGATTCTAGCAAGTGATGGACTGTGGGATGTTTTCTCTA 959
Query 716 ATGAGGAAGCGGTTGCAGTGGTGAAAG-AAGTTGAAGATCCGGAAGAGTCCACC-AAGAA 773
|||||| ||| |||||| |||| |||| ||||||||||||| || || || | | || ||
Sbjct 960 ATGAGGCAGCAGTTGCAATGGT-AAAGGAAGTTGAAGATCCCGAGGACTC-AGCGAAAAA 1017
Query 774 ACTTGTGGGCGAAGCAATTCGGAGAGGAAGTGCAGACAATATTACATGTGTAGTCGTACG 833
||| ||||| |||||||| ||||||||||||||| || || |||||||| ||||| ||
Sbjct 1018 ACTGGTGGGTGAAGCAATAAAGAGAGGAAGTGCAGATAACATCACATGTGTTGTCGTTCG 1077
Query 834 TTTCTTGGAGA 844
|||||||||||
Sbjct 1078 TTTCTTGGAGA 1088
> AT4G31750.1 | Symbols: WIN2 | HOPW1-1-interacting 2 | chr4:15364418-15367716
REVERSE LENGTH=1438
Length=1438
Score = 564 bits (305), Expect = 9e-160
Identities = 634/791 (80%), Gaps = 30/791 (4%)
Strand=Plus/Plus
Query 64 AGCGGAGGTGGTCTCAGTCAGAATGGAAAATTCAGCTATGGATATGCAAGCTCAGCTGGG 123
||||| ||||| ||||||||||| || || ||||||||||||||||||||||| | ||
Sbjct 327 AGCGGTGGTGGCCTCAGTCAGAACGGGAAGTTCAGCTATGGATATGCAAGCTCTCCCGGT 386
Query 124 AAGAGATCATCTATGGAAGACTTTTTTGAGACTAGGATCGACGGTATCGATGGAGAAATC 183
|| ||||| |||||||| ||||| | ||| |||||||||||||| | || || |||||
Sbjct 387 AAAAGATCTTCTATGGAGGACTTCTATGAAACTAGGATCGACGGCGTTGAAGGGGAAATA 446
Query 184 GTCGGTCTATTTGGAGTCTTTGATGGACATGGTGGAGCAAGAGCAGCTGAGTATGTGAAG 243
|| ||||||||||||||||||||||||||||| || ||| | |||||||| |||||||||
Sbjct 447 GTTGGTCTATTTGGAGTCTTTGATGGACATGGAGGTGCACGTGCAGCTGAATATGTGAAG 506
Query 244 CGTCATCTTTTCAGCAATCTTATTACTCATCCTAAGTTCATCTCTGATACCAAATCTGCA 303
| |||| ||||| || || || | ||||| ||||||||||||||||||| | |||||
Sbjct 507 CAAAATCTCTTCAGTAACCTGATCAGGCATCCAAAGTTCATCTCTGATACCACAGCTGCA 566
Query 304 ATAGCTGATGCATATA-CTCATACAGACTCTGAACTTCTCAAGTCAGAAAATAGTCACA- 361
|||||||||||||| | | || |||||||| || |||| || |||||||||||||| |
Sbjct 567 ATAGCTGATGCATACAAC-CAAACAGACTCAGAGTTTCTTAAATCAGAAAATAGTCAGAA 625
Query 362 CTAGAGATGCTGGTTCTACTGCTTCCACAGCTATTCTT-GTTGGTGATCGTTTACTTGTT 420
| |||||||||||||| || || || ||||| || ||| |||||||| ||||||||||||
Sbjct 626 C-AGAGATGCTGGTTCAACGGCGTCAACAGCCAT-CTTAGTTGGTGACCGTTTACTTGTT 683
Query 421 GCTAATGTTGGTGATTCCAGAGCTGTTATATGTC-GAGGCGGAAATGCCT-TTGCTGTGT 478
|| ||||| || || || |||||||| ||||| | |||| || ||||| | ||||||| |
Sbjct 684 GCAAATGTAGGGGACTCTAGAGCTGTAATATG-CAGAGGTGGCAATGC-TATTGCTGTAT 741
Query 479 CAAGAGACCATAAACCTGACCAAAGTGATGAACGTGAACGGATTGAGAATGCTGGTGGTT 538
| |||| || || ||||| |||||||| || || || | |||||| |||| || || |
Sbjct 742 CCCGAGATCACAAGCCTGATCAAAGTGACGAGCGCCAAAGAATTGAGGATGCAGGAGGAT 801
Query 539 TTGTGATGTGGGCAGGGACTTGGAGAGTTGGAGGAGTTCTTGCAGTTTCTCGCGCCTTTG 598
|||| |||||||| || || ||||||||||||||||||||||| |||||||| || ||||
Sbjct 802 TTGTCATGTGGGCTGGAACATGGAGAGTTGGAGGAGTTCTTGCTGTTTCTCGTGCATTTG 861
Query 599 GTGATCGATTGCTGAAACAGTATGTTGTTGCTGATCCAGAAATTCAGGAAGAGAA-GATT 657
| ||| | ||| |||| |||||||||||||||||||| || || ||||| || || | ||
Sbjct 862 GCGATAGGTTGTTGAAGCAGTATGTTGTTGCTGATCCGGAGATACAGGAGGAAAAAG-TT 920
Query 658 GAT-GATTCTCTTGAATTTCTGATTCTTGCTAGCGATGGACTATGGGATGTTTTCTCCAA 716
||| | | |||| || ||||| |||||||| || ||||| || ||||| ||| | || ||
Sbjct 921 GATAGCT-CTCTCGAGTTTCTCATTCTTGCAAGTGATGGTCTCTGGGACGTTGTATCTAA 979
Query 717 TGAGGAAGCGGTTG-CAGTGGTGAAAGAAGTT-GAAGATCCGGAAGA-G-TCCACCAAGA 772
|||||||| || | || || | || | | | |||||||| || || | | || ||||
Sbjct 980 CGAGGAAGCCGTAGGCA-TGATCAAGGC-GATAGAAGATCCCGAGGAAGGTGCA--AAGA 1035
Query 773 AACTTG-TGG-GCGAAGCAATT-CGGA-GAGGAAGTGCAGACAATATTACATGTGTAGTC 828
||| | || | ||||| || | | |||||||||||||||| || || ||||| |||
Sbjct 1036 GACT-GATGATG-GAAGC--TTACCAAAGAGGAAGTGCAGACAACATAACTTGTGTCGTC 1091
Query 829 GTACGTTTCTT 839
|||||||||||
Sbjct 1092 GTACGTTTCTT 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66013716675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5