BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489356
Length=2335
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24970.2 | Symbols: | Protein kinase superfamily protein | ... 3402 0.0
> AT5G24970.2 | Symbols: | Protein kinase superfamily protein
| chr5:8604324-8608842 REVERSE LENGTH=2506
Length=2506
Score = 3402 bits (1842), Expect = 0.0
Identities = 2027/2115 (96%), Gaps = 18/2115 (1%)
Strand=Plus/Plus
Query 236 ATTGTAGCGTTACGTGATGATAAAACTA-TTGACT-TCAAGCCCAGAGGGAAGGATAATG 293
||||||||||| |||||||| || |||| ||| || || || || |||| ||||||
Sbjct 361 ATTGTAGCGTTCCGTGATGACAATACTATTTGTCTGTC--TCCAAGCTTGAAGAATAATG 418
Query 294 GGCTCTCAAGACAGACAAATACATGGGTTTCACCATTTTGCTTGCAA--CACAG-GTATT 350
|||||||||||||||||| |||||||||||||||||||||||||| || || |||||
Sbjct 419 AACTCTCAAGACAGACAAATTCATGGGTTTCACCATTTTGCTTGCAACGCAGAGCGTATT 478
Query 351 CGACGGGTTTCACCAGCGTACATGGTGGAATACCTACGGCAGAGTATGCAAAGTTGCGGA 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGACGGGTTTCACCAGCGTACATGGTGGAATACCTACGGCAGAGTATGCAAAGTTGCGGA 538
Query 411 GAGAATCCCTTGAAACTGAATTTGGGCATGCCCTAGGAGCATATAGCTCGAAAAGTTTTT 470
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 539 GAGAATCCCTTGAAACTGAATTTGGACATGCTCTAGGAGCATATAGCTCGAAAAGTTTTT 598
Query 471 CTGCAGTGTACCGTTTTGGCCCCTTTTTGGCTTTGTATAGAGCTGCAATCATTTCCTACC 530
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 599 CTGCAGTGTATCGTTTTGGACCCTTTTTGGCTTTGTATAGAGCTGCAATCATTTCGTATC 658
Query 531 ATGTGGTGAAGCTTGCCTTTTGGCAGCTGTTTGTTCAGGATATGAGGAAACGGGCTGTCA 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATGTGGTGAAGCTTGCCTTTTGGCAGCTGTTTGTTCAGGATATGAGGAAACGGGCTGTCA 718
Query 591 AGTTCCGCGAGACTCTTATCAGCTTGGGGCCTTTCTACA-T----T---A-AGGCACTGA 641
||||||| ||||||||||||||||||||||||||||||| | | | |||||||||
Sbjct 719 AGTTCCGTGAGACTCTTATCAGCTTGGGGCCTTTCTACATTAAGCTGGGACAGGCACTGA 778
Query 642 GCACGAGACCAGACATATTACCATCTATATATTGTCAGGAACTTTCAAAGTTGCAGGACC 701
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 779 GCACGAGACCAGACATATTACCATCTATATACTGTCAGGAACTTTCAAAATTGCAGGACC 838
Query 702 AGATTCCTCCATTTCCAACTACTATTGCCATGCGATGTATTGAAGAGCAACTGGGTGCTC 761
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 839 AGATTCCTCCATTTCCAACTACTGTTGCCATGCGATGTATTGAAGAGCAACTGGGTGCTC 898
Query 762 CAGTGTCAAAACTTTTTGCAGATATTAGTCTTAAACCTGTTGCTGCTGCATCCCTGGGTC 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CAGTGTCAAAACTTTTTGCAGATATTAGTCTTAAACCTGTTGCTGCTGCATCCCTGGGTC 958
Query 822 AGGTATACAAAGCTCATCTGCATTCTGGACAATTGGTAGCCGTTAAGGTTCAGAGACCTG 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGGTATACAAAGCTCATCTGCATTCTGGACAATTGGTAGCCGTTAAGGTTCAGAGACCTG 1018
Query 882 GAATGTCACTCATTCTAACACGTGATGCCCTCTTATTCAAAATGATTGGGGGACAACTGA 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GAATGTCACTCATTCTAACACGTGATGCCCTCTTATTCAAAATGATTGGGGGACAACTGA 1078
Query 942 AACGATTTGCGAAAGCCCGTAAGGATCTTTTGGTAGCGGTGAATGAGATGGTCAGGCATA 1001
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AACGATTTGCTAAAGCCCGTAAGGATCTTTTGGTAGCGGTGAATGAGATGGTCAGGCATA 1138
Query 1002 TGTTTGACGAAATAGATTACGTTCTCGAGGCAAAAAATGCAGAACGATTTGCTTCTCTAT 1061
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1139 TGTTTGACGAAATAGATTACGTTCTCGAGGCAAAAAATGCAGAACGATTTGCCTCTCTAT 1198
Query 1062 ACAGTTTTGACTCAGGGAATGAGCAGATTAATGTTAACGATGGACCTAGGAATAAGTCCA 1121
||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| |||||
Sbjct 1199 ACAGTTTTGACTCAGGGAATGAGCAGATTGATGATAACGCTGGACCTAGGAATATGTCCA 1258
Query 1122 GGAATCACAGAGCAGAGAACATCAAAGTCCCTAAAATTTACTGGAATTTTACACGCACAG 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GGAATCACAGAGCAGAGAACATCAAAGTCCCTAAAATTTACTGGAATTTTACACGCACAG 1318
Query 1182 CAGTGCTCACAATGGAATGGATCGATGGCATAAAATTAACAGATGAAATTAAGCTGAAAA 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CAGTGCTCACAATGGAATGGATCGATGGCATAAAATTAACAGATGAAATTAAGCTGAAAA 1378
Query 1242 GGGCTTCCCTTGATAGAAGGGACTTGATCGATCAGGGCTTATCCTGTTCATTAAAACAGC 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1379 GGGCTTCCCTTGATAGAAGGGACTTGATCGATCAGGGCTTATCCTGTTCATTAAAGCAGC 1438
Query 1302 TTCTTGAGGTTGGGTTCTTTCACGCTGATCCGCACCCAGGAAATCTTGTCGCTACTAAAG 1361
||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1439 TTCTTGAGGTTGGATTCTTTCATGCTGATCCGCACCCAGGAAATCTTGTGGCTACTAAAG 1498
Query 1362 AAGGGTCTCTTGTTTACTTTGACTTCGGAATGATGGGAAATATTCCACGCCATTACCGTG 1421
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1499 AAGGGTCTCTTGTTTACTTTGACTTCGGAATGATGGGGAATATTCCACGCCATTACCGTG 1558
Query 1422 TTGGACTTATTCAAATTCTGGTGCATTTTGTCAACCGTGATTCTCTAAGTTTGGCAAATG 1481
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TGGGACTTATTCAAATTCTGGTGCATTTTGTCAACCGTGATTCTCTAAGTTTGGCAAATG 1618
Query 1482 ATTTCCTGTCCTTGGGATTTTTGCCTGAAGGGGTCGATATACAAGCAGTTTCAAATGCTT 1541
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1619 ATTTCCTGTCCTTGGGATTTTTGCCTGAAGGGGTTGATATACAAGCAGTTTCAAATGCTT 1678
Query 1542 TGCGTGCTTCATTTGGTTCGACTACGAGGTTATCACAAGATTTCCAGGGGGTAATGGAAC 1601
||||| ||||||||||||| |||||||| |||||||||||||||||||||| |||||||
Sbjct 1679 TGCGTACTTCATTTGGTTCTACTACGAGAATATCACAAGATTTCCAGGGGGTGATGGAAC 1738
Query 1602 AATTATATGATGTTATGTACGAGTTCAACTTTTCGCTGCCTCCAGATTATGCTCTTGTTA 1661
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1739 AATTATATGATGTTATGTACGAGTTCAACTTTTCGCTGCCTCCAGACTATGCTCTTGTTA 1798
Query 1662 TAAGATCTCTTGGTTCACTGGAAGGCACGGCTAAGATTCTTGATCCAGAGTTTAAAGTGA 1721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 TAAGATCTCTTGGTTCACTGGAAGGCACGGCTAAGATTCTTGATCCAGAGTTTAAAGTGA 1858
Query 1722 TCGAGAGCGCATATCCATTTGTTATCGGGAGGCTATTAGCAGATCCAAGCCCAGATATGA 1781
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 TTGAGAGTGCATATCCATTTGTTATCGGGAGGCTATTAGCAGATCCAAGCCCAGATATGA 1918
Query 1782 GGAAAATTCTAAGGGAACTTGTCATTTGTAATGATGGATCAATAAGGTGGAATCGTCTTG 1841
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 GGAAAATACTAAGGGAGCTTGTCATTTGTAATGATGGATCAATAAGGTGGAATCGTCTTG 1978
Query 1842 AACGCCTGGTAGCAGCTATATCAGAACAGGCTTCTGCGACTTCAGGAGACTCTCGAGAAG 1901
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1979 AACGCCTGGTAGCAGCAATATCAGAACAGGCTTCTGCGACTTCAGGAGACTCTCCAGAAG 2038
Query 1902 ATAAAACGTTGAAGAAATCATCGGAACTAAAATCATTCGACATGCATTCAGTAGTTTCCG 1961
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2039 ATAAAACGTTGAAGAAATCATCGGAACTGAAATCATTCGACATGCATTCAGTAGTTTCCG 2098
Query 1962 CCACAGAAGATCTGCTACTGTTCATATTATCAGAGAAAGGGCAGAGAGTTCGAGTCTTCC 2021
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2099 CAACAGAAGATCTGCTACTGTTCATATTATCCGAGAAAGGGCAGAGAGTTCGGGTCTTCC 2158
Query 2022 TTCTACAGGACATAATCAGAGTGGTTGACATATTCCTGGAAGAAGCGGCTCTTGATCTTA 2081
|||| || |||||||||||||||||||| || |||||||||| || ||||||||| || |
Sbjct 2159 TTCTTCAAGACATAATCAGAGTGGTTGATATTTTCCTGGAAGTAGAGGCTCTTGAGCTCA 2218
Query 2082 ACACGACCATCAATCTTAAGAGGGAAGAAGGGACAATGAATAGAGTGAGCAATGGATTCA 2141
||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 2219 ACAAGACCATCAATCTTAAGACGGAAGAAGGGACAATGAAAAGAGTGAGCAATGGATTCA 2278
Query 2142 A-GTGTCTGAATGAAGCGGTGAAGCTTGCACCTGGAATGTGGATATCAATGCTTCTTCGG 2200
| | |||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2279 AAG-GTCTGAGTGAGGCGGTGAAGCTTGCACCGGGAATGTGGATATCAATGCTTCTTCGG 2337
Query 2201 ATGTCAAGGAAGTCTGAGGTTCATAGTTATGCTTTAGATATTGTTTCTGCATTGTCTACA 2260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2338 ATGTCAAGGAAGTCTGAGGTTCATAGTTATGCTTTAGATATTGTTTCTGCATTGTCTACA 2397
Query 2261 CATTTTGGCCACAAAGTGCCTCACACTTGTTGGATCCTTTTCTCCAAATTGCTCCATCAC 2320
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2398 CATTTTGGCCACAAAGTGCCTCACACTTGTTGGATCCTTCTCTCCAAATTGCTCCATCAC 2457
Query 2321 AGTAGGAGCCAATAA 2335
| || ||||||||||
Sbjct 2458 AATAAGAGCCAATAA 2472
Score = 364 bits (197), Expect = 2e-99
Identities = 225/238 (95%), Gaps = 3/238 (1%)
Strand=Plus/Plus
Query 1 ACGTGGAGAGAGAGA-TACTCAAAACTTTCTTCTTCTTCTTCGGACGGACGATCTCGTTT 59
||||||||| ||||| | ||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1 ACGTGGAGAAAGAGACT-CTCAAAACTTTCTTCGTCTTCTTCGGACGGACAATCTCGTTT 59
Query 60 ACGCATTTTATCGAACAGTTTCTGTGCATAAAAGCT-ACGAGTGGTGAATCAAACGGACT 118
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 60 ACGCATTTTATCGAACAGTTTGTGTGCATAAAAGCTAACGAGTGGTGAATCTAACGGACT 119
Query 119 ATGGGATTTTCGCTTGCTGTTCGACTGAATAGATCGTCGTCTCGTTCGTGTTGTTAGCCG 178
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 120 ATGGGATTTTCGCTTGCTGTTCGACTGAATAGATCTTCGTCTCGTTCGTGTTGTTAGCCG 179
Query 179 ATGAGGAATGTCGTTGTTGCTCTCCGCCATCATCGCCGTGTTTCGCTGCTCCGGAGAA 236
|||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 180 ATGAGGAATGCCGTTGTTGCGCTCCGCCATCACCGTCGTGTTTCGCTGCTCCGGAGAA 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115913058405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5