BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489361
Length=2338
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25070.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3367 0.0
> AT5G25070.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages; Has
1807 Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8640998-8643491
REVERSE LENGTH=2494
Length=2494
Score = 3367 bits (1823), Expect = 0.0
Identities = 2087/2216 (94%), Gaps = 12/2216 (1%)
Strand=Plus/Plus
Query 128 CGGAGGCGACACTGATCACGGCTCCTTCTCAGCCAGATATGACGGAGGCTTTGGACGAGA 187
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 184 CGGAGGCGACACTGATCACGGCTACTTCTCAGCCAGATATTACGGAGGCTTTGGACGAGA 243
Query 188 ATCTGTTTTCAGACTTAACGATTGTGACTCCGGTTCAACACCAACCTGAGCCGATCGAGG 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 244 ATCTGTTTTCAGACTTAACGATTGTGACTCCGGTTCAACACCAACCTGAGCCGATGGAGG 303
Query 248 TAGTTA-C--TACTCATCAATCTCCGGCGAAGAATTATGGACGTCAGGTTTCACGGAGGA 304
||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 304 CAGTTATCACTACTCATCAATCTCCGGCGAAGAATTATGGACGTCAGGTGTCACGGAGGA 363
Query 305 AGAAAAGAGCAGCTGGATTAAGAATTGGATACGGTAGGCACGAAACCAACAATCTCGAGG 364
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 364 AGAAGAGAGCGGCTGGATTAAGAATTGGATACGGTAGGCACGAAACCAACAATCTCGACG 423
Query 365 AAGACGAAGATGATTCCGTTAGTCAACAGTCCGATTCCGTTAGTCAAGTATCGGATTCCG 424
|||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 424 AAGACGAAGATGATGCCGTTAGTCAACAATCCGATTCCGTTAGTCAAGTATCAGATTCAG 483
Query 425 TTACTCAAGTGTTTGATTCCGTCGCGCAAGTGATTGATTCCGGTAATCAATCTTTGGACT 484
||| |||| | | ||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 484 TTAGTCAAATATCTGATTCCGTCGCGCAAGTGTTTGATTCCGGTAATCAATCTTTAGACT 543
Query 485 CTCCTGCTGTTAGTGTTGTTGTTGGTAATGGTAGCTCAAGGTTGGAATTAGTCAAGGCTC 544
|||||| ||||| ||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 544 CTCCTGTTGTTACTGTGGTTGTTGGTAATGGTAGCTCAAGGTTGGAGTTAGTTAAGGCTC 603
Query 545 AGATCGAAGCGAAGCTAAATCGAGCTCGTGAATTGGCCGCTTCGGTTACTTCTGCTCGCA 604
|||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |
Sbjct 604 AGATCGAAGCGAAGCTAAATCGTTCTCGTGATTTGGCTGCTTCGGTTACTTCTGCTCGTA 663
Query 605 AGAATGCGATTAGGAAGAGAAGGCAAGCATCTGAGAATCTCAGATTAGCTTCTACGACTC 664
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 664 AGAATGCGATTAGGAAGAAAAGGCAAGCATCTGAGAATCTCAGATTAGCTTCTACGACGC 723
Query 665 ACGAAGAGCTCGAGAAGCAGCTTGAGGAAGCGATCGAGGCCGAGGATTTCGATGCGGCTG 724
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 724 ACGAAGAGCTCGAGAAGCAGCTTGAGGAAGCGATCGAGACAGAGGATTTCGATGCGGCTG 783
Query 725 AGAGGATTAGCGAAAGCCTCGCGGCTAAGGAAAGAGATAGGCTAGCTTTGTTGGCATTGC 784
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 784 AGAGGATTAGCGAAAGCCTCGCTGCTAAGGAAAGAGATAGGCTAGCATTGTTGGCATTGC 843
Query 785 TTCGCCAAGCAGAATCTGATTGTGACGCTATTGAGTCGAAAATGGAGGAGGTTCTTCTTT 844
|||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 844 TTCGCCAAGCGGAATCTGATTGCGATGCTATTGAGTCGAAAATGGAAGAGGTTCTTCTTT 903
Query 845 CTCAGATTGCAGCTGAAGAAGAATCCGCCTCTCTGCTTCGGAGGTTTTG-CACCGATGCT 903
||||||||||||||||||||||||| |||| ||||||||| || ||||| ||| ||||||
Sbjct 904 CTCAGATTGCAGCTGAAGAAGAATCTGCCTGTCTGCTTCGTAG-TTTTGGCACGGATGCT 962
Query 904 GAGAATGATGCTGGATCGATTCTGGAGAAGGCAGAAGCTTTTTATTCAGATGAAATGGAG 963
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 963 GAGAATGATGCTGGATCGATTCTGGAGAAAGCAGAAGCTTTTTATTCAGATGAAATGGAG 1022
Query 964 AAATGGCATTCTTGTTCTGAAGATGTGGAAGTTAGAAAAGTCGAATTGGATATAGAATCT 1023
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1023 AAATGGCATTCATGTTCTGAAGATGTTGAGGTTAGAAAAGTCGAATTGGATATAGAATCT 1082
Query 1024 GTTGTTGTTGATAACGTTCGGTTGTCGTTGAATGGTACTCTTGAGGGATCCGTTGAACAA 1083
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1083 GTTGTTGTTGATAACGTTCGGTTGTCGTTGAATGGTATTCTTGAGGGATCTGTTGAACAA 1142
Query 1084 GATATGAAAGAAAAGGAGATGCTGCGGAAGAAGAAAGAACATTTGTCAAATGAACTTGAG 1143
||||||||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||
Sbjct 1143 GATATGAAAGAGAAGGAGATACTGCAGAAGAAGAAAGAACATTTGGCAAATGAACTTGAG 1202
Query 1144 GAGTTGCTTGCTCTGGTGAAGGCTAAGGAGAAGGAGATTGACGAGAACGATTTGCAAATA 1203
||| |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1203 GAGCTGCTTGCTTTGGTGAAGGCAAAGGAGAAGGAGATTGACGAGAACGATTCGCAAATA 1262
Query 1204 GAGGCAGTTGAGGAAAGAATTAACAATGTGGTGACTGGCTACAAGGAATTGCAAACAAGC 1263
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1263 GAGGCAGTTGAGGAAAGAATTAACAATGTGGTGACTGGCTTCAAGGAATTGCAAACAAGT 1322
Query 1264 ATGGATAAAATGTTAAACGATGTGCAAGCGGGTCTCACCCAGATTGATAAGGAAAGTGAA 1323
||||||||||||||||||||||||||||| |||||||| || |||| ||||||| ||||
Sbjct 1323 ATGGATAAAATGTTAAACGATGTGCAAGCTGGTCTCACTGAGGTTGACAAGGAAACTGAA 1382
Query 1324 GAATTATCAAGGAAAAAGAAAGACGTGGACGAGTTCATGACATCTGAGAAGGAGAGAGGA 1383
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 GATTTATCAAGGAAGAAGAAAGACGTGGACGAGTTCATGACATCTGAGAAGGAGAGAGGA 1442
Query 1384 GCCAAACTCCGTGATCTTGCCCTTGTTTCAACAGATGAAGCATGTGAATATGAGGAAGTT 1443
|||||||| ||||||||||||| ||||||| | |||||||| ||||||||||||||||||
Sbjct 1443 GCCAAACTTCGTGATCTTGCCCGTGTTTCAGCGGATGAAGCTTGTGAATATGAGGAAGTT 1502
Query 1444 ATTAAATTGCGAAAAGGTCTGATGTCATATGTGTCTAAAACTAGAGAAGAGAGAGCCAAG 1503
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1503 ATTAAATTGCGGAAAGGTTTGATGTCATATGTGTCTAAAACTAGAGAAGAGAGAGCTAAG 1562
Query 1504 CTTGTAAATATCGAAGAGAAGCTTTCTGAGGAAGTACAGAAGCTACAAGAGGAGGTTTCT 1563
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 CTTGTAAATATCGAAGAGAAGCTTTCTGAGGAAGTACAGAAGCTACAAGAGGAGGTTTCC 1622
Query 1564 AGTACCCGAGAGTCACTAAAGGAGCGATCTTCTAAAAAGTCGATCATCCAACAGAATATT 1623
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1623 AGTACCCGAGAGTTACTTAAGGAGCGATCTTCTAAAAAGTCGATCATCCAACAGAACATT 1682
Query 1624 ACATCTTTTATGGATAAAATTATGTTCATAGAGAAAAGGATGCCGGAGCTTGAAGCAGAG 1683
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1683 ACATCTTTCATGGATAAAATTATGTTCATAGAGAAAAGGATGCCGGAGCTTGAAGCAGAG 1742
Query 1684 AAGAAAGTTGCCGCATCAACGAGAAATTTCAAAGAAGCTGGAAGAATAGCTGCAGAAGCC 1743
|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1743 AAGAAAGTGGCTGCATCAACGAGAAATTTTAAAGAAGCTGGAAGAATAGCTGCAGAAGCC 1802
Query 1744 AAGTCCTTAAATCTAGAAAAGGATAAGATACAAATGGAAACAGGAAAAGCTAACGCTGAG 1803
||||| |||||| ||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1803 AAGTCTTTAAATTTAGAAAAGGATAAGACACAGATGGAAACAGGAAAAGCTAACGCTGAG 1862
Query 1804 CTCGAAAAAGCAGAACATGAGATCGAAGAAACCATCAAGAGGCTACAAGAGATAGAGAGG 1863
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1863 CTCGAAAAAGCAGAGCATGAGATTGAAGAAACCATCAAGAGGCTACAAGAGATAGAGAAG 1922
Query 1864 TTGATTTTGTCAAAAGAAAAAGAATTGGCTATCAGTAGATTCCAGAGGTTGCGGATTGAG 1923
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1923 TTGATTTTGTCGAAAGAAAAAGAATTGGCTATTAGTAGATTCCAGAGGTTGCGGATTGAC 1982
Query 1924 AGTGGCACTGCAAAAGCCGAGAGATCAGCTGCTCTGGAACTGAGCGACGTTGAAGAAGCT 1983
||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1983 AGTGGAACTGCAAAAGCTGAGAGATCAGCTGCTCTGGAACTGAGCGACCTTGAAGAAGCT 2042
Query 1984 AAGCTTCTACTTGAGGAAGCGCAAGAAGCAGAATCCGAGGCAGAAAAGCTTAAACTCACA 2043
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2043 AATCTTCTACTTGAGGAAGCGCAAGAAGCAGAATCCGAGGCAGAGAAGCTTAAACTCACA 2102
Query 2044 TGCGGTCTCAAAGAGGAGGAAGAAAAAGAAGAAAACGAGGCAAAGA-CTTGCGAAGTTTT 2102
||||||||||||| |||||||| ||||||| || || |||| | || ||||||||
Sbjct 2103 GGCGGTCTCAAAGAAGAGGAAGAGGAAGAAGAGAA--AG-CAAA-ATCTAATGAAGTTTT 2158
Query 2103 TGTCTCGATGGAACTCATAGCCACTGTTGGTCTGAAGAAATTACAAGAATTGGCGGAATG 2162
|||||||||||||||||||||||| ||||||||||| |||||||||||| ||| |||||
Sbjct 2159 TGTCTCGATGGAACTCATAGCCACCGTTGGTCTGAAAAAATTACAAGAACTGGTGGAATC 2218
Query 2163 TGTTCCATCTTAACTCTGAAGCTGCTTCAGGTTCAATCCTAGGGACTACAGGAATGTCCT 2222
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2219 TGTTCCATCTTAACTCTGAAACTGCTTCAGGTTCAATCCTAGGGACTACAGGAATGTCCT 2278
Query 2223 GAATCATCAAGTAAAAGAACCAAATGGTTGGTTTTGTAGATCTATCAACAACATTAAGCT 2282
||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 2279 GAATCATCAAGGAAAAGAACCGAATGGTTGGTTTTGTAAATCTATCAACAACATTAAGCT 2338
Query 2283 CCATAACGCAGTCCACATATATGgtttttgtttgtttttggttttgGGATCCATGT 2338
|||||||||||||||| ||||||||||||||||| || | |||||||||||||||
Sbjct 2339 CCATAACGCAGTCCACGTATATGGTTTTTGTTTGGTTGT--TTTTGGGATCCATGT 2392
Score = 220 bits (119), Expect = 4e-56
Identities = 158/176 (90%), Gaps = 6/176 (3%)
Strand=Plus/Plus
Query 1 ATGGATGGTGGCGACGATATGGATTCGCTGTTCGAAGGGATGGAGCTTTTTACGCCGGTG 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 21 ATGGATGGTGGCGACGATATGGATTCCCTGTTCGAAGGGATGGAGCTTTTTACACCGGCG 80
Query 61 GCTGAGCTCACCGGAGATAACAAGGTAAGCTCACCGCCTCAATCTGGAGATAATGAAACC 120
|| || || |||| || | ||||||||||||||||||||||||| | || ||||||
Sbjct 81 TCTCAGTTCTCCGGTGACAGCAAGGTAAGCTCACCGCCTCAATCT---G--AA-GAAACC 134
Query 121 AAGGCGGCGGAGGCGACACTGATCACGGCTCCTTCTCAGCCAGATATGACGGAGGC 176
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 135 AAGGCGGCGGAGGCGACACTGATCACGGCTCCTTCTCAACCAGATGTGACGGAGGC 190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116063660040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5