BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489362
Length=983
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25080.1 | Symbols: | Sas10/Utp3/C1D family | chr5:8643672-... 1345 0.0
> AT5G25080.1 | Symbols: | Sas10/Utp3/C1D family | chr5:8643672-8647058
FORWARD LENGTH=1007
Length=1007
Score = 1345 bits (728), Expect = 0.0
Identities = 925/1013 (91%), Gaps = 41/1013 (4%)
Strand=Plus/Plus
Query 1 TTCAACACTTGTCGGCGACTAAGAGAATCTAACCGGAAACCTAAACTCTTTACCTCTGA- 59
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2 TTCAACACTTGTCGGCGACTCAGAGAATCTAACCGGAAACCTAATCTCTTTACCTCTGAG 61
Query 60 T-T-T-T---TC-GA-TTTTCAA---T----TTCTCGATTCGATTGAAGATGGAAGGAGG 104
| | | | | || ||||||| | |||||||||||||||||||||||||||||
Sbjct 62 TCTATCTACGCCGGATTTTTCAATTTTCAAATTCTCGATTCGATTGAAGATGGAAGGAGG 121
Query 105 TGGAGGAAGTAGCGGCGGCGCGACGGCGGGAGCTGGAGGAGTGGTTCCGGAATCAGCGAT 164
||||||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 122 TGGAGGAAGTA---GCGGCG-GA-----GGAGCTGGAGGAGTGGTTCCGGAATCAGCGAT 172
Query 165 TGAAGCGGTGAATCAAACACTTGCGTACCTCAAGGAACTGAAACCACAGCTTGAGCAGAT 224
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 173 TGAAGCGGTGAATCAAACACTTGCGTACCTCAAGGAACTGAAGCCACAGCTTGAGCAGAT 232
Query 225 GCTGACTTTGGCTGAGCCAGAAGTTCTTGCTGCAATGCAGCCATTGCAGCGAGCTAAGAC 284
||||||||| ||||||||||| ||||| ||||||||||| ||||| ||||||||||||||
Sbjct 233 GCTGACTTTAGCTGAGCCAGAGGTTCTCGCTGCAATGCAACCATTACAGCGAGCTAAGAC 292
Query 285 TATGTACTTGCTAGCTGGAGCCACAACTACTCTTTACGAACTGAGGTTGAGGTGTACTGG 344
|||| |||||||||||| |||||| |||||||||||||||||||||||||| ||||||||
Sbjct 293 TATGCACTTGCTAGCTGAAGCCACCACTACTCTTTACGAACTGAGGTTGAGATGTACTGG 352
Query 345 TGTTGATCCTGATGATCATCGTGTGAAATCTGAAATTGAGCGGATAAATGTGTACAGAGA 404
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 353 TGTTGATCCTGATGATCATCGTGTAAAATCTGAAATTGAGCGGATAAACGTGTACAGAGA 412
Query 405 GAAGTTTCAGAAGTGC-TTGGATCAAAGTAAAGAACCATTGCGCCCGACTACTGTCCTAA 463
||||||||||||||| ||| |||||||||||| ||| ||||||||||| |||||| |||
Sbjct 413 GAAGTTTCAGAAGTGTGTTG-ATCAAAGTAAAGGACCTTTGCGCCCGACCACTGTCTTAA 471
Query 464 ACCGTCAGGCAGCAACCCGTTTTATCGAACATTCTCTACCTGATCTTACATCGACCCAAA 523
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 472 ACCGTCAGGCAGCAACCCGTTTCATCGAACATTCTCTACCTGATCTTACATCGACCCAAA 531
Query 524 AGCAAAACATTAGAGACCTCAGTAGAGGAGAGAAATCAAGGTTCAGGAATTCGGAAACAA 583
|||||| ||||||||||||||||| |||||||||||| ||| ||||| |||| ||||||
Sbjct 532 AGCAAAGCATTAGAGACCTCAGTAAAGGAGAGAAATCGAGGATCAGGTATTCTGAAACAT 591
Query 584 CTGCGAGAAAGAGGAAATACCAATCAA--------C--T--GTTCAATCAGCCGCGAAGG 631
||||||||||||||||||||||||||| | | ||||| ||||| |||||||
Sbjct 592 CTGCGAGAAAGAGGAAATACCAATCAAATGAGAAACAGTCTGTTCAGTCAGCTGCGAAGG 651
Query 632 ACTTTCTTGAAAAAGCAGCTCGTGAGATTATCGGTAACAATGAAAATGGTTTGAAGGGAC 691
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 652 ACTTTCTTGAAAAGGCAGCTCGTGAGATTATCGGTCACAATGAAAATGGTTTGAAGGGCC 711
Query 692 CTTTAATGGCGGCAGCTGATGGTTCAGATGATGTTGAAGTTGGTACAGCCTGATTTACTA 751
||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 712 CTTTAGTAGCGGCAGCTGATGGTTCAGATGATGTCGAAGTTGGTACAGCCTGATTTATTA 771
Query 752 CCAATATATCATGCTGCTGCTACATCTTCTGGATCGTAGTTGTGGCATTCGTCATCGTCG 811
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 772 CCAATATATCATGCTGCTGCTACATTTTCTGGAACGTAGTTGTGGCATTCGTCATCGTCG 831
Query 812 CCATTGCAGAGAAGTTGGTTTTGTCAAGTTTTAAAATTTTTGGACCTAGTTAGTGTTGTG 871
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 ACATTGCAGAGAAGTTGGTTTTGTCAAGTTTTAAAATTTTTGGACCTAGTTAGTGTTGTG 891
Query 872 GTGTATGCTGTATGTACATTGCATTGTGTTTAGCAACTGCTTTCGGAAAGCTCTTGAAGT 931
||||||||||| |||||||||||||||||| || |||| ||||||||||||||||||||
Sbjct 892 GTGTATGCTGTTTGTACATTGCATTGTGTT-AGTTACTGTTTTCGGAAAGCTCTTGAAGT 950
Query 932 TGGTGAATTT-GTATTCGGAAATAACATTAATCTTCAAAAGGCAAAAGAATTC 983
||||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 951 TGGTGCATTTTGTATTCGGAAATAACATTAATATTTAAAAGGCAAAAGAATTC 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48124312826
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5