BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489363
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25090.1 | Symbols: ENODL13, AtENODL13 | early nodulin-like ... 850 0.0
> AT5G25090.1 | Symbols: ENODL13, AtENODL13 | early nodulin-like
protein 13 | chr5:8647018-8647817 REVERSE LENGTH=722
Length=722
Score = 850 bits (460), Expect = 0.0
Identities = 624/701 (89%), Gaps = 20/701 (3%)
Strand=Plus/Plus
Query 2 TCTCTATAT--CTCTTACACAAACTTAATTCTAATGGCTCAGAGAACTCTTATCGAAGCT 59
||||||||| ||| ||||||||||| |||||||||||||||||||||| | | | ||
Sbjct 30 TCTCTATATAGCTCATACACAAACTTCATTCTAATGGCTCAGAGAACTC-T-T-GTTGCA 86
Query 60 ACTTTTCTAttct--tcttcttcttcttGGCTAATTTTG-CATGTTGCAAAGAGATTCTC 116
|| ||| | |||| |||||||||| ||| ||||| | | | ||| ||||||||||| |
Sbjct 87 ACATTT-T-TTCTAATCTTCTTCTTGTTGACTAATCTCGTC-TGTAGCAAAGAGATTATT 143
Query 117 GTTGGAGGCAAAACCAGCGCCTGGAAAATCCCTTCTTCGCCTTCCGAGTCCCTAAACAAA 176
|| ||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||
Sbjct 144 GTCGGAGGCAAAACCAGCTCCTGGAAGATCCCTTCTTCGCCTTCTGAGTCCCTAAACAAA 203
Query 177 TGGGCTGAGAGTTTACGGTTTCACGTCGGCGATTCTCTCGTGTGGAAGTACGATGGA-GA 235
|||||||||||||||||||||| ||| ||||| |||||||||||||||||||| || ||
Sbjct 204 TGGGCTGAGAGTTTACGGTTTCGCGTTGGCGACACTCTCGTGTGGAAGTACGAT-GAGGA 262
Query 236 AAAGGACTCGGTTTTGCAAGTGACAAAAGAAGCGTACATTAACTGTAACACCACAAACCC 295
|||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||||
Sbjct 263 AAAGGACTCGGTTTTGCAAGTGACGAAAGATGCATACATTAACTGCAACACCACAAACCC 322
Query 296 AGCAGCTAATTACAGCAATGGAGACACTAAAGTGAAGCTAGAGAGATCCGGTCCTTACTT 355
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 323 AGCAGCTAACTACAGCAATGGAGATACTAAAGTGAAGCTAGAGAGATCTGGTCCTTACTT 382
Query 356 CTTCATCAGCGGCTCCAAAAGTAACTGTGTTGAAGGTGAGAAGCTTCACATTGTAGTCAT 415
||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct 383 CTTCATCAGCGGCTCTAAAAGCAACTGCGTTGAAGGTGAGAAGCTTCATATTGTTGTCAT 442
Query 416 GTCCACTCGTGGTGGCCACACCGGTGGTTTCTTTACCGGCTCTGCTCCTTCTCCCGCACC 475
|||| ||||||||||||||||||||||||| ||||| || ||| |||||||||| |||||
Sbjct 443 GTCCTCTCGTGGTGGCCACACCGGTGGTTTTTTTACTGGTTCTTCTCCTTCTCCTGCACC 502
Query 476 TTCTCCTGCTTTG---GGAGCTCCTGCTGTTGCTCCTGCCACTGGT-G--CTGCTTCTTC 529
||||| |||||| |||||||| |||| ||||| |||| |||| | ||||||||||
Sbjct 503 ATCTCCAGCTTTGTTAGGAGCTCCCACTGTGGCTCCAGCCAGTGGTGGCTCTGCTTCTTC 562
Query 530 TTTGACTCGCCAAGTTGGGGTTTTGGTATTTGTTGGATTATTAGGGGTTGTTTTGCTCTG 589
||| |||||||||||||||||||||| ||||||||||||||||| | |||||||||| ||
Sbjct 563 TTTAACTCGCCAAGTTGGGGTTTTGGGATTTGTTGGATTATTAGCGATTGTTTTGCTTTG 622
Query 590 ATTTTAACCTACTTTGTTCAAATTTTATCTCTGCTTTTTGATTCTTTGATCCACAAGATT 649
| |||||||| |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 623 A-TTTAACCTGCTTTGTTCAACTTCTATCTCTGCTTTTTGATTCTTTGATCCACAAGATT 681
Query 650 TGTTGAATTCTTTTGCCTTTTGGAGATTAATGTTATTTCCG 690
||||||||||||||||||||| | ||||||||||||||||
Sbjct 682 TGTTGAATTCTTTTGCCTTTTAAATATTAATGTTATTTCCG 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5