BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489367
Length=2183
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25150.1 | Symbols: TAF5 | TBP-associated factor 5 | chr5:86... 3374 0.0
> AT5G25150.1 | Symbols: TAF5 | TBP-associated factor 5 | chr5:8677091-8682205
FORWARD LENGTH=2183
Length=2183
Score = 3374 bits (1827), Expect = 0.0
Identities = 2069/2187 (95%), Gaps = 11/2187 (1%)
Strand=Plus/Plus
Query 1 ATCgagagagagagagaAGCGAGAACAATAATGGATCCAGAGCAAATCAACGAGTTCGTT 60
|||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||
Sbjct 1 ATCGAGAGAGAGAGAG-A--GAG-ACAACAATGGATCCAGAGCAAATCAACGAGTTCGTC 56
Query 61 GTGGGTTACTTGAAGAAGAAAGGATTCAATAGCGCTGCTAAAGACCTTGAAGCTTATCAT 120
||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 57 GTGGGCTACTTGAAGAAGAAAGGATTCAGTAGCGCTGCTAAAGACCTTGAATCTTATCAT 116
Query 121 CACCACAACAACAATGGTAGCAGTTTCACTTCTACCGATTATCATAACGATCCTGAGCTC 180
||||| ||||| ||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 117 CACCAGAACAATAATGGTAGCTCCTTCACTTCTGTCGATTATCATAACGATCCTGAGCTC 176
Query 181 ACCAAACTCATCCGCTCCTTTTCCCAACAAGAAGATGATCCTACTCGGTACCGTGAGGGT 240
|| || ||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 177 ACGAAGCTCATTCGCTCCTTTTCTCAACAAGAAGATGATCCAACTCGGTACCGTGAAGGT 236
Query 241 TACAGCAATCTAAGGTCATGGGCTTATAATTCACTCGATTTATATAAGCATGAATTGCTT 300
|||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 237 TACAGCAAACTAAGGTCATGGGCGTATAATTCTCTGGATTTATATAAGCATGAATTGCTT 296
Query 301 CGAGTTATGTATCCTGTGTTTATTCATTGTTACATGGATTTGGTGGGAAAAGGGCACACT 360
||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 297 CGAGTGATGTATCCTGTGTTTATTCATTGTTACATGGATCTGGTGGGGAAAGGGCACACT 356
Query 361 CAAGAAGCGAGAGGCTTCTTTAACAGCTTCCGCAGAGATCATGAGATGGTACACTTACGG 420
|||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 357 CAAGAAGCTAGAGCCTTCTTTAACAGCTTCCGCAAAGATCATGAGATGGTACACTTACGG 416
Query 421 GATCTTCAGAA-ATTGGAAGGTGTTCTTGCTCCATCTCATCTAGAGGAGATGGAGTTTGC 479
||||||||||| || ||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 417 GATCTTCAGAAGCTT-GAAGGCGTGCTTTCTCCATCTCATCTAGAGGAGATGGAGTTTGC 475
Query 480 TCGTTCTCTTAGAAAAAGCAAGGTCAACATCAAGATTTCTCAGTATTCATATGATCTGTT 539
|||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||
Sbjct 476 TCGTTCTCTTAGAAAAAGCAAGGTTAACATCAAGTTTTGTCAGTATTCATATGAGCTGTT 535
Query 540 AATTCAGTATCTACAAAGGACAAAATCGACTTTAATGCTTGGTATTATTAACGAGCACAT 599
| ||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 536 ACTTCAGTATCTACATAGTACAGTATCGACTTTAATGCTTGGTATTATTAACGAGCACAT 595
Query 600 CAATTTCCAAGTCTACTCAGGACAACCTACTCCCTCATCCGATGACATAGAAGCTGTCAC 659
|||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||
Sbjct 596 CAATTTCCAAGTCTACTCGGGACAGCCTACTTCCTCATCCGATGACATAGAAGCTGTCAC 655
Query 660 CATTTTTGGGAGTTTTCAGGACACAGCTAATCACATTAATCAAAAAGAAATACAGTGGGG 719
|||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 656 CATTGTCGGGAGTTTTCAGGACACTGCTAATCACATTAATCAAAAAGAAATACAGTGGGG 715
Query 720 ATTGCTTGAAGACTCGCTAGAAGATCGCCTTGAGAAGACAGGAGGTCTGCTGTCTGATTC 779
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATTGCTTGAAGATTCACTAGAAGATCGCCTTGAGAAGACAGGAGGTCTGCTGTCTGATTC 775
Query 780 TGAGAAGGGACAAGGAGAAAGTAAAGACGGGGATGCAGATGATAGTAAGAAAAGATCCAC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TGAGAAGGGACAAGGAGAAAGTAAAGACGGGGATGCAGATGATAGTAAGAAAAGATCCAC 835
Query 840 TGAAATTGGAAAGCAAGGCTCTTCCTTAAAAAAGTTAAAGAAGGACAAAGCGGGAAATGC 899
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 836 TGAAATTGGAAAGCAAGGCTCTTCCTTAAAAAAGTTGAAGAAGGACAAAGCGGGTAATGC 895
Query 900 AACAGCAAAAGTTGCACGTCTGGAGACCATTACGGTGCCACCGGCCCCACGTGTAAAACC 959
||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 896 AACAGCAAAAGTTGCACGTCTGGAGACCATTACGGTGTCACCGGCGCCGCGTGTAAAACC 955
Query 960 AGAACTTGCCTTGCCAGTAATGTCTACAGACGTAGAGCAATCCATCCTTGAAGACCTGAG 1019
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 956 AGAACTTGCCTTGCCAGTAATGTCCACAGATGTAGAGCAATCCATCCTTGAAGACCTTAG 1015
Query 1020 AAACCGTGTGCAGTTGAGCAGTGTCGCAATGCCTTCAGTCAGCTTTTATACATTTGTGAA 1079
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1016 AAACCGTGTGCAGTTGAGTAGTGTTGCAATGCCATCAGTCAGCTTTTATACATTTGTGAA 1075
Query 1080 TACTCATAACGGGTTAAATTGTTCATCTATATCTCATGATGGATCTCTGGTTGCTGGTGG 1139
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TACTCATAACGGGTTAAACTGTTCATCTATATCTCATGATGGATCTCTGGTTGCTGGTGG 1135
Query 1140 GTTCTCAGATTCATCAATAAAGGTCTGGGACATGGCTAAGATAGGACAAGCTGGCAGTGG 1199
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GTTCTCAGATTCTTCAATAAAGGTCTGGGACATGGCTAAGATAGGACAAGCTGGCAGTGG 1195
Query 1200 TGTTTTGCAGGGTGAAAATGATACAAATGATCAAATTATGGGACCAAATGGCAGAAGAAG 1259
|| |||||||| |||||||||| ||| |||||||| || ||||||||||||||||||||
Sbjct 1196 TGCTTTGCAGGCTGAAAATGATTCAAGTGATCAAAGCATAGGACCAAATGGCAGAAGAAG 1255
Query 1260 TTATACATTATTACTGGGTCACTCAGGGCCAGTTTACTCGGCCACTTTTAGTCCCCCTGG 1319
||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 1256 TTATACATTATTACTGGGTCATTCAGGGCCAGTTTACTCAGCCACTTTCAGTCCCCCTGG 1315
Query 1320 AGATTTTGTTCTATCTTCTTCAGCAGATACAACAATTCGACTGTGGAGCACAAAACTAAA 1379
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1316 AGATTTTGTTCTATCTTCTTCAGCAGATACAACAATACGACTGTGGAGCACAAAACTAAA 1375
Query 1380 TGCCAATCTCGTGTGCTACAAGGGTCATAATTACCCTGTATGGGATGTCCAGTTTAGCCC 1439
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1376 TGCTAATCTCGTGTGCTACAAGGGTCATAATTACCCTGTATGGGATGCCCAGTTTAGCCC 1435
Query 1440 TTTCGGTCATTACTTTGCAAGTTGTTCTCATGATCGTACTGCACGGATTTGGTCAATGGA 1499
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TTTCGGTCATTACTTTGCAAGCTGTTCTCATGATCGTACTGCACGGATTTGGTCAATGGA 1495
Query 1500 CCGAATTCAACCTCTTCGGATAATGGCAGGGCATCTATCTGATGTTGATTGTGTACAGTG 1559
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 CCGAATACAACCTCTTCGGATAATGGCAGGGCATCTATCTGATGTTGATTGTGTACAGTG 1555
Query 1560 GCATCCCAATTGTAACTACATTGCAACCGGTTCTAGCGATAAGACGGTTAGACTGTGGGA 1619
|||||||||||||||||||||||| |||||| ||| ||||||||||||||||| |||||
Sbjct 1556 GCATCCCAATTGTAACTACATTGCTACCGGTAGTAGTGATAAGACGGTTAGACTCTGGGA 1615
Query 1620 TGTGCAAACTGGGGAGTGTGTCCGGATATTCGTTGGGCACAGGAGTATGGTTTTATCATT 1679
|||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1616 TGTGCAAACTGGAGAATGTGTCCGGATATTCATTGGGCACAGGAGTATGGTTTTATCATT 1675
Query 1680 GGCGATGTCTCCGGATGGGAGATATATGGCCTCCGGTGATGAAGATGGCACCATAATGAT 1739
|||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1676 GGCGATGTCTCCAGATGGGAGATATATGGCTTCCGGTGATGAAGATGGCACTATAATGAT 1735
Query 1740 GTGGGACCTCTCAACAGCTCGCTGCATCACTCCTCTCATGGGCCATAATTCATGTGTCTG 1799
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 GTGGGACCTCTCAACTGCTCGCTGCATCACTCCTCTCATGGGCCATAATTCATGTGTCTG 1795
Query 1800 GAGTCTCTCTTACAGCGGCGAGGGCTCTCTTCTGGCTTCTGGATCTGCAGACTGCACAGT 1859
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1796 GAGTCTCTCATACAGCGGGGAGGGCTCTCTTCTGGCTTCTGGATCCGCAGACTGCACAGT 1855
Query 1860 GAAACTGTGGGACGTCACCTCAAGTACCAAATTAACAAAGGCCGAGGCAAAGAATGGGAA 1919
|||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| ||
Sbjct 1856 GAAACTGTGGGACGTCACTTCAAGTACCAAATTGACAAAGGCCGAGGAAAAGAATGGAAA 1915
Query 1920 CACCAACAGGTTGCGCTCACTCAGGACTTTCCCCACCAAGTCCACACCAGTTCACGCTCT 1979
| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 CTCGAACAGATTGCGCTCACTCAGGACTTTCCCCACCAAGTCCACACCAGTTCACGCTCT 1975
Query 1980 CAGATTTTCTCGGAGAAATTTGTTGTTTGCTGCAGGAGC-ACTCTCTAAACCCGCAAGCT 2038
| | ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 1976 CCGGTTTTCTCGGAGAAATTTGTTGTTTGCTGCAGGAGCGA-TCTCTAAACCCGCAAACT 2034
Query 2039 GATCAAAACAATGGTATCAGATATTGATACTTTAACATTCATACAAGCTGTTTGTAGATC 2098
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 2035 GATCAAAACAATGGTATCAGATATTGATGCTTTAACATTCTTACAAGCTGTT-GTAGATC 2093
Query 2099 --AGAAGAAATCAGGTGTAGAATAGTTATCTCCAAAGATTATTTGTTTGTGGCTTTTGTT 2156
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2094 TCAGAAGAAATCAGGTGTAGAATAGTTATCTCCAAAGATTATTTGCTTGTGGCTTTTGTT 2153
Query 2157 TCTCATTTCTAAATCACAAAGATGTTG 2183
||||||||||||||| |||| ||||||
Sbjct 2154 TCTCATTTCTAAATCCCAAAAATGTTG 2180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108282575565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5