BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489371
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25190.1 | Symbols: | Integrase-type DNA-binding superfamil... 1171 0.0
> AT5G25190.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:8706790-8707748 REVERSE LENGTH=856
Length=856
Score = 1171 bits (634), Expect = 0.0
Identities = 770/830 (93%), Gaps = 31/830 (4%)
Strand=Plus/Plus
Query 31 TCTTCTTTCAAAACATTTCCACAAACACACTAAACTCACCTG-AACTCT-TTTCCCATTT 88
|||||||||||||||||||||||||||||| ||||||||||| ||| || ||| ||||||
Sbjct 22 TCTTCTTTCAAAACATTTCCACAAACACACCAAACTCACCTGAAACCCTATTT-CCATTT 80
Query 89 ACCATTCACACTAATGGCACGACCACAACAACGGTTTCGAGGCGTTAGACAGAGGCATTG 148
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 81 ACCATTCACACTAATGGCACGACCACAACAACGCTTTCGAGGCGTTAGACAGAGGCATTG 140
Query 149 GGGCTCTTGGGTCTCCGAAATTCGTCACCCACTCTTGAAAACAAGAATCTGGCTAGGGAC 208
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 141 GGGCTCTTGGGTCTCCGAAATTCGTCACCCTCTCTTGAAAACAAGAATCTGGCTAGGGAC 200
Query 209 GTTTGAGACGGCGGAGGATGCAGCAAGGGCCTACGACGAGGCAGCGAGGCTAATGTGCGG 268
||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 201 GTTTGAGACAGCGGAGGATGCAGCAAGGGCCTACGACGAGGCGGCTAGGCTAATGTGTGG 260
Query 269 CCCGAGAGCTCGTACCAATTTCCCATACAACCCTAATGCCATTCCTACTTCCTCTTCCAA 328
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CCCGAGAGCTCGTACTAATTTCCCATACAACCCTAATGCCATTCCTACTTCCTCTTCCAA 320
Query 329 GCTTCTTTCAGCCACACTCACTGCTAAACTCCACAAATGCTACATGGCTTCTCTTCAAAT 388
|||||| ||||| || || || ||||||||||||||||||||||||||||||||||||||
Sbjct 321 GCTTCTATCAGCAACTCTTACCGCTAAACTCCACAAATGCTACATGGCTTCTCTTCAAAT 380
Query 389 GACCAAACAAACGCAAACACAAACGCAAACGCAGACCGCAAGATCACAATCCCCGGACAC 448
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 381 GACCAAGCAAACGCAAACACAAACGCAAACGCAGACCGCAAGATCACAATCCGCGGACAG 440
Query 449 TAACGGTGTGACGGCCAATGGAAA-TCAGTTT-AACAGGGAAGTAGGAGTAACGGAGACG 506
| ||||||||||||| || |||| ||| ||| ||| || ||||||||||||||||
Sbjct 441 TGACGGTGTGACGGCTAA-CGAAAGTCA-TTTGAAC-----AG-AGGAGTAACGGAGACG 492
Query 507 ACGGAGATCAAGTGGGAAGATGGAAACGCGAATATGCAACAGAATTTTAGGCCATTGGAG 566
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 493 ACAGAGATCAAGTGGGAAGATGGAAATGCGAATATGCAACAGAATTTTAGGCCATTGGAG 552
Query 567 GAAGATCATATTGAGCAAATGATTGAGGAGCTGCTTCACTACGGTTCCATTGAGCTTTGC 626
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 GAAGATCATATCGAGCAAATGATTGAGGAGCTGCTTCACTACGGTTCCATTGAGCTTTGC 612
Query 627 TCTGTTTTACCAACTCAGACGCTGTGAGAAATGGCCCTGTCGTTTTAGCGTATTCTTTT- 685
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 613 TCTGTTTTACCAACTCAGACGCTGTGAGAAATGGCCTTGTCGTTTTAGCGTATTCTTTTC 672
Query 686 -T----ATTTT-------A-AAA--CGGCGTCGTAAGTGATGAG-GTAGTAGTGAGAAAA 729
| ||||| | ||| ||||||||||||||||||| |||||||||||| ||
Sbjct 673 ATTTTTATTTTTGTTTCCACAAAAACGGCGTCGTAAGTGATGAGAGTAGTAGTGAGAGAA 732
Query 730 GGCTAATTTCAAGACATTTTGATCTGAATTGGCCTCTTTTGAAACACTGGTTCTGGTTTC 789
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 733 GGCTAATTTCAAGACATTTTGATCTGAATTGGCCTCTTTTGAAACACTGATTCTAGTTTC 792
Query 790 CATAAGAGGCAATCGATCATATGCTATGTAATGTATAGTATTATAAAAAA 839
||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 793 TATAAGAG-CAATCGATCATATGCTATGTTATGTATAGTATTATAAAAAA 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40890595658
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5