BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489372
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25210.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1157 0.0
> AT5G25210.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G32030.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:8723958-8725771 FORWARD LENGTH=932
Length=932
Score = 1157 bits (626), Expect = 0.0
Identities = 817/902 (91%), Gaps = 42/902 (5%)
Strand=Plus/Plus
Query 1 tctctctctctctcAAAGTTAGTATCTCAGTACCTTTACGCTTTGtctct-tcttct-tc 58
|||||||||||||||||||||||||||||||||||||||||||||| | | || ||| ||
Sbjct 22 TCTCTCTCTCTCTCAAAGTTAGTATCTCAGTACCTTTACGCTTTGT-T-TGTC-TCTATC 78
Query 59 ttcttcttG-GATTCAGAGAATGGTTTCATCAGATGATTGGACGAAGTGTGCGATGAGAG 117
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 TTCTTCCTGATATTCAGAGAATGGTTTCATCAGATGATTGGACGAAGTGTGCGATGAGAG 138
Query 118 ATGGAGAAGTGGTGGCAGAGCTTTTGGT-AAGGCTTAAAGAAGCCAAAGTAATCAAGAAT 176
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 139 ATGGAGAAGTGGTGGCAGAGCTTTTGGTGAA-GCTTAAAGAAGCCAAAGTAATCAAGAAT 197
Query 177 CCGGTTGTAGCAGCACTCCGGTGGGGAATCCGGCAGCCACGGTCTCGGTGTCCGAGGAAA 236
||| ||||| |||| |||||||||||||||| |||||| ||||||||||||| || |||
Sbjct 198 CCGATTGTAACAGCGCTCCGGTGGGGAATCCAACAGCCAAGGTCTCGGTGTCCAAGAAAA 257
Query 237 GAAGCTGAATCTAGATGTAGTCCAAGTACACCACTATCTTGGAGTGGTGGTTGTGGTGGT 296
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 GAATCTGAATCTAGATGTAGTCCAAGTACACCACTATCTTGGAGTGGTGGTTGTGGTGGT 317
Query 297 TCTTCTTCTTCTCCATCTGGTTATGTCGATGGTTACGAAGCTACTAGTCGTCAGATCAGT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 318 TCTTCTTCTTCTCCATCTGGTTATGTCGATGGTTACGAAGCTACTAGTCGTCAAATCAGT 377
Query 357 GCCGTTGGATCTAGATCCAAGAACATTGCATCACTTAGATCACCATTCAGCGAGCGAGAC 416
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 378 GCCGTTGGATCTAGATCCAAGAACATTTCATCACTTAGATCACCATTCAGCGAGCGAGGC 437
Query 417 ATCGAAAACAATAACTTGAAGAGAATGAAGATGAATCATAGTCAGAATTTGGCAGAGAAT 476
||||| || ||||||||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 438 ATCGAGAATAATAACTTGAAGAGAATGAAGATGAATCATATTCAGAATTTGGCAAAGGAT 497
Query 477 GAGAATCGCAAGGCGGATGGCAATTTCTTGCTACCAGATTTGAATATAATGCCATGTGAC 536
|||||| ||||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 498 GAGAATTGCAAGACAGATGGCAATTTCTTGCTACCAGATTTGAATATAGTGCCATGTGAC 557
Query 537 GAAAATAGTGACCATTATTCGTCTTTGGGTGTGGAAACAACACTATATGGGATAAGGATT 596
|||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 558 GAAAATAGTGACCACTATACGTCTTTAGGTGTGGAAACAACACTATATGGGATAAGGATT 617
Query 597 ATAAGGTGAAAGAAACTCACTTAATC-ATGAGAA-GTGGTTTTGAGAATCTGGTTCGATC 654
|||||||||||||| ||||||||||| ||||||| |||||||||||||| | || |
Sbjct 618 ATAAGGTGAAAGAAGCTCACTTAATCCATGAGAAAGTGGTTTTGAGAAT--G-TT---T- 670
Query 655 AGAGTAAGCTGATTTGATCATCTTTGGCTCGGCTTTTGAAAAGGGTTTGCTCCACGCAGG 714
| || ||||| |||||||||||| |||||||||| ||||||||| || ||||||| |
Sbjct 671 A-AG----CTGATCTGATCATCTTTGACTCGGCTTTTTAAAAGGGTTCGCGCCACGCATG 725
Query 715 AACTCGAAAAGACAAAAGATCTTCTGTGTATAAATTCCTCTCAAGGAAGTTTCCATTATG 774
| |||||||||||||| || || ||||||||||| |||||||||||| || ||
Sbjct 726 AGCTCGAAAAGACAAA-GA------GT--ATAAATTCCTC--AAGGAAGTTTCCTTTGTG 774
Query 775 GGGTGGTATCTAATTTTCTATAAAGATCATCAGCAA-TGTGTAAGATAGATAAAACAAAG 833
|||||| |||| | | || |||||||||||||| |||||||||||||||||||||||
Sbjct 775 TGGTGGT-TCTA-TAT---ATGAAGATCATCAGCAAATGTGTAAGATAGATAAAACAAAG 829
Query 834 AGAAGAATATAATAATTTCTGATTATTTCTTTGTAGCAAGAACAAAAATAGATATTTTGT 893
||||||||||||| || ||| || |||||||||||||| |||||||| |||||||||||
Sbjct 830 AGAAGAATATAAT--TT-CTGGTTGTTTCTTTGTAGCAATAACAAAAACAGATATTTTGT 886
Query 894 AT 895
||
Sbjct 887 AT 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43703707890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5