BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489374
Length=1816
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25220.1 | Symbols: KNAT3 | KNOTTED1-like homeobox gene 3 | ... 2566 0.0
AT5G11060.1 | Symbols: KNAT4 | KNOTTED1-like homeobox gene 4 | ... 992 0.0
> AT5G25220.1 | Symbols: KNAT3 | KNOTTED1-like homeobox gene 3
| chr5:8736074-8738584 FORWARD LENGTH=1899
Length=1899
Score = 2566 bits (1389), Expect = 0.0
Identities = 1700/1841 (92%), Gaps = 58/1841 (3%)
Strand=Plus/Plus
Query 2 TGATAATTGAAACATAAGAAACAATCGTCATAGAAGCAGAAGCAGCAGAGATTCACCTTC 61
|||||||||||||||| |||||||||||| | | ||||||||||||||||||
Sbjct 3 TGATAATTGAAACATATGAAACAATCGTCGT--CA-TAGAAGCAGCAGAGATTCA----- 54
Query 62 TTCTCTTTCTTTCTTTATCTTTCCCTCTCAGAAACAGGAAA-ATAATTC-aaaa-aa-aa 117
| | ||||||||||||||||||||||||||||||||||| | ||||| |||| || ||
Sbjct 55 --C-C-TTCTTTCTTTATCTTTCCCTCTCAGAAACAGGAAACAAAATTCAAAAAGAACAA 110
Query 118 aaaaaaaaa-GTCAAGCCAAAACGATGGCGTTTCATCACAATCATCTCTCTCAAGACCTC 176
||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 111 AAAAAAAAAGGTCAAACCAAAACGATGGCGTTTCATCACAATCATCTCTCACAAGACCTC 170
Query 177 TCCTTCAATCATTTCACCGACcaacaccaacctcctcctccgcaaccgcctcctcctccg 236
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 171 TCCTTCAATCATTTCACCGACCAACACCAACCTCCACCTCCGCAACCGCCTCCTCCTCCT 230
Query 237 ccgcaacaacaacaacaTTTTCAAGAAGCCCCGCCTCCTAATTGGCTCAACACAGCGCTT 296
|||||||| ||||||||||| |||||||| ||||||||||||||| | ||||||||||||
Sbjct 231 CCGCAACAGCAACAACATTTCCAAGAAGCACCGCCTCCTAATTGGTTAAACACAGCGCTT 290
Query 297 CTTCGTTCCTCCGATAACAACAAT---TTCCTTAACCTCCACACAGCTACCGCTAACACC 353
||||||||||| |||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 291 CTTCGTTCCTCAGATAACAACAATAACTTCCTCAACCTCCACACAGCCACCGCTAACACC 350
Query 354 ACAACCGCAAGCAGCTCCGATTCTCCTT-CT-----TCCGCCGCCGCTGCTGCTAACCAG 407
|||||||||||||||||||||||||||| || |||||||||| ||||||||||||
Sbjct 351 ACAACCGCAAGCAGCTCCGATTCTCCTTCCTCCGCCGCCGCCGCCGCCGCTGCTAACCAG 410
Query 408 TGGCTCTCTCGCTCCTCCTCCTTCCTCCAACGAAACAACAAC-GCAACAGCCTCCACCGT 466
||||| |||||||||||||| ||||||||||||||||||||| |||| || |||| |
Sbjct 411 TGGCTATCTCGCTCCTCCTCTTTCCTCCAACGAAACAACAACAACAAC-GCTTCCA---T 466
Query 467 TGTCGGAGAAGGAATCGATGATGTCACTGGAGGAGCGGAGACTATGATTCAGGGAGAGAT 526
|||||||| || |||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 467 AGTCGGAGATGGGATCGATGATGTCACCGGAGGAGCAGACACTATGATTCAGGGAGAGAT 526
Query 527 GAAAAGCGGCGGTGGAGAAAACAAAAACGACGGCGGAGGAGCTACGGCGGCGGACGGAGT 586
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 527 GAAAACCGGCGGTGGAGAAAACAAAAACGACGGCGGAGGAGCTACGGCGGCGGATGGAGT 586
Query 587 TGTGAGCTGGCAGAATGCGAGACACAAGGCGGAGATCCTCTCTCATCCTCTTTACGAGCA 646
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 587 AGTGAGCTGGCAGAATGCGAGACACAAGGCGGAGATCCTTTCGCATCCTCTTTACGAGCA 646
Query 647 GCTTTTGTCGGCGCACGTTGCTTGTTTGAGAATCGCGACTCCGGTTGATCAGCTTCCGAG 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GCTTTTGTCGGCGCACGTTGCTTGTTTGAGAATCGCGACTCCGGTTGATCAGCTTCCGAG 706
Query 707 AATCGATGCTCAGCTTGCTCAGTCACAACACGTCGTCGCTAAATACTCAGCTTTAGGCGC 766
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 707 AATCGATGCTCAGCTTGCTCAGTCTCAACACGTCGTCGCTAAATACTCAGCTTTAGGCGC 766
Query 767 CGCCGCTCAAGGACTCGTCGGTGATGACAAAGAGCTTGACCAGTTCATGACACATTATGT 826
|||||||||||| |||||||| || || ||||| ||||||||||||||||||||||||||
Sbjct 767 CGCCGCTCAAGGTCTCGTCGGCGACGATAAAGAACTTGACCAGTTCATGACACATTATGT 826
Query 827 GTTGTTACTGTGTTC-TTTCAAAGAGCAATTGCAACAACACGTTCGTGTTCATGCAATGG 885
|||| |||||||||| ||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 827 GTTGCTACTGTGTTCATTT-AAAGAGCAATTGCAACAACATGTGCGTGTTCATGCAATGG 885
Query 886 AAGCTGTGATGGCTTGTTGGGAGATTGAGCAGTCTCTTCAAAGCTTAACAGGTGTGTCTC 945
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 886 AAGCTGTGATGGCTTGTTGGGAGATTGAGCAGTCTCTTCAAAGCTTAACAGGAGTGTCTC 945
Query 946 CTGGTGAAGGGATGGGAGCAACAATGTCTGATGATGAAGATGAACAAGTAGAGAGTGATG 1005
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 946 CTGGAGAAGGGATGGGAGCAACAATGTCTGACGATGAAGATGAACAAGTAGAGAGTGATG 1005
Query 1006 CTAATTTGTTCGATGGGAGCTTAGATGTGTTGGGGTTTGGTCCTTTGGTTCCTACTGAGA 1065
||||| ||||||||||| | |||||||||||||| |||||||||||| ||||||||||||
Sbjct 1006 CTAATATGTTCGATGGGGGATTAGATGTGTTGGGTTTTGGTCCTTTGATTCCTACTGAGA 1065
Query 1066 GTGAGAGATCGTTGATGGAAAGAGTTAGACAAGAACTCAAACATGAACTCAAACAGGGTT 1125
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1066 GTGAGAGGTCGTTGATGGAAAGAGTTAGACAAGAACTTAAACATGAACTCAAACAGGGTT 1125
Query 1126 ACAAGGAGAAGATAGTAGACATAAGAGAGGAGATATTGAGGAAGAGAAGAGCTGGGAAAT 1185
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1126 ACAAGGAGAAGATAGTAGACATAAGAGAGGAGATATTAAGGAAGAGAAGAGCTGGGAAGT 1185
Query 1186 TACCAGGAGACACTACCTCTGTTCTTAAAGCATGGTGGCAATCTCATTCTAAGTGGCCTT 1245
|||||||||| || ||||||||||| ||||| ||||||||||||||||| || |||||||
Sbjct 1186 TACCAGGAGATACCACCTCTGTTCTCAAAGCTTGGTGGCAATCTCATTCCAAATGGCCTT 1245
Query 1246 ACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAAGAGACAGGTTTGCAGCTAAAGCAGA 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1246 ACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAAGAGACAGGTTTGCAGCTAAAACAGA 1305
Query 1306 TAAACAATTGGTTCATCAATCAGAGAAAGAGGAACTGGCATAGCAATCCATCTTCTTCCA 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 TAAACAATTGGTTCATCAATCAGAGAAAGAGGAACTGGCATAGCAATCCATCTTCTTCCA 1365
Query 1366 CTGTCTTGAAGAACAAACGCAAAAGCAATGCAGGTGACAATAGCGGGAGAGAGCGGTTCG 1425
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1366 CTGTATTGAAGAACAAACGCAAAAGCAATGCAGGTGACAATAGCGGAAGAGAGCGGTTCG 1425
Query 1426 CGTAGAAAGAACGAATATATGATGTGAATTGGG-AGGTGGAAGATGGGATTC-AAATGCA 1483
|||||||| ||| || ||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 1426 CGTAGAAACAACAAACATATGATGTGAATTGGGGAGGTGGAAGATGGGATTTGAAA-GCA 1484
Query 1484 GGGTTT-AGGGGTTTAAAGTTTGAGAAATTGATGGAGGAGTTTGGGTTATACAGAGAGAG 1542
|||||| |||| ||||||||| ||||| || |||||||||||||| ||||||||||||||
Sbjct 1485 GGGTTTTAGGGATTTAAAGTT-GAGAATTTTATGGAGGAGTTTGGATTATACAGAGAGAG 1543
Query 1543 AGGGGACAGTATTAGAAAGTAACTTTTTGTGCAATTACATAGTA-CGTAGTTTGGTTATG 1601
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1544 -GGG-ACAGTATTAGAAAGTAACTTTTTGTGCAATTACATAGTAACGTAGTTTGGTTATG 1601
Query 1602 TGAT---GCCCATATATTTTATTAAGTAGTACACAAACCaaaaaaaaaaaaaaagatgaa 1658
|||| |||||||||||||||||||||| |||||||||||||| |||| | ||||
Sbjct 1602 TGATTATGCCCATATATTTTATTAAGTAGCACACAAACCAAAAAGAAAATA-----TGAA 1656
Query 1659 aaaaGAAGATTCAGGCttttgtttaatgttttttgtttgtttgtttgtctgcatgagttt 1718
|| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1657 AACTGAAGATGCAGGCTTTTGTTTAATGTTTTTTGTTTGTTTGT----CTGCATGAGTTT 1712
Query 1719 ttAGTC-ATGAACCATCAGATAatcatcatcatcatcatcGTAATATATCTTGTGAATAA 1777
|| | |||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1713 TTTTTTTATGAACCATCAGATAATCATCATCATCATC--CATAATATATCTTGTGAATAA 1770
Query 1778 AGTTAGTGAGAG-G-AGAACATTGGGATGCACAAGTTTTCT 1816
|| ||||||||| | ||||||||||||||||||||||||||
Sbjct 1771 AGATAGTGAGAGAGGAGAACATTGGGATGCACAAGTTTTCT 1811
> AT5G11060.1 | Symbols: KNAT4 | KNOTTED1-like homeobox gene 4
| chr5:3510118-3513305 FORWARD LENGTH=1810
Length=1810
Score = 992 bits (537), Expect = 0.0
Identities = 735/832 (88%), Gaps = 8/832 (1%)
Strand=Plus/Plus
Query 590 GAGCTGGCAGAATGCGAGACACAAGGCGGAGATCCTCTCTCATCCTCTTTACGAGCAGCT 649
||| ||||||||||||||||||||||||||||| || |||||||| || |||||||| ||
Sbjct 638 GAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTATACGAGCAACT 697
Query 650 TTTGTCGGCGCACGTTGCTTGTTTGAGAATCGCGACTCCGGTTGATCAGCTTCCGAGAAT 709
||||||||| ||||| || || |||| ||||| || ||||| |||||||||||||| ||
Sbjct 698 TTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCTTCCGAGGAT 757
Query 710 CGATGCTCAGCTTGCTCAGTCACAACACGTCGTCGCTAAATACTCAGCTTTAGGCGCCGC 769
|| || |||||||||||||| ||| ||||||| ||||| |||||| ||||| | ||
Sbjct 758 AGACGCACAGCTTGCTCAGTCTCAAAACGTCGTGGCTAAGTACTCAACTTTA---GAAGC 814
Query 770 CGCTCAAGGA---CTCGTCGGTGATGACAAAGAGCTTGACCAGTTCATGACACATTATGT 826
|||||||||| |||| ||| |||||||| ||||||||||| |||||||| ||||||||
Sbjct 815 CGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCATTATGT 874
Query 827 GTTGTTACTGTGTTCTTTCAAAGAGCAATTGCAACAACACGTTCGTGTTCATGCAATGGA 886
| || || || ||||||||||| ||| ||||||| || ||||||||||||||||||||
Sbjct 875 ACTATTGCTTTGCTCTTTCAAAGAACAACTGCAACAGCATGTTCGTGTTCATGCAATGGA 934
Query 887 AGCTGTGATGGCTTGTTGGGAGATTGAGCAGTCTCTTCAAAGCTTAACAGGTGTGTCTCC 946
|||||| ||||| |||||||||||||| ||||| |||||||| || ||||| || |||||
Sbjct 935 AGCTGTTATGGCCTGTTGGGAGATTGAACAGTCGCTTCAAAGTTTTACAGGGGTATCTCC 994
Query 947 TGGTGAAGGGATGGGAGCAACAATGTCTGATGATGAAGATGAACAAGTAGAGAGTGATGC 1006
||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 995 TGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAGTGATGC 1054
Query 1007 TAATTTGTTCGATGGGAGCTTAGATGTGTTGGGGTTTGGTCCTTTGGTTCCTACTGAGAG 1066
| ||||||| ||||| |||||||||| ||| |||||||||||| | ||||| ||||||||
Sbjct 1055 TCATTTGTTTGATGGAAGCTTAGATGGGTTAGGGTTTGGTCCTCTAGTTCCCACTGAGAG 1114
Query 1067 TGAGAGATCGTTGATGGAAAGAGTTAGACAAGAACTCAAACATGAACTCAAACAGGGTTA 1126
|||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||
Sbjct 1115 CGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTCAAACATGAACTCAAGCAGGGTTA 1174
Query 1127 CAAGGAGAAGATAGTAGACATAAGAGAGGAGATATTGAGGAAGAGAAGAGCTGGGAAATT 1186
||||||||| || || |||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1175 CAAGGAGAAAATTGTGGACATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGGAAAATT 1234
Query 1187 ACCAGGAGACACTACCTCTGTTCTTAAAGCATGGTGGCAATCTCATTCTAAGTGGCCTTA 1246
|||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1235 ACCAGGAGACACCACCTCTGTTCTCAAATCATGGTGGCAATCTCATTCTAAGTGGCCTTA 1294
Query 1247 CCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAAGAGACAGGTTTGCAGCT-AAAGCAGA 1305
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||||
Sbjct 1295 CCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACGGGTTTGCAGCTCAAA-CAGA 1353
Query 1306 TAAACAATTGGTTCATCAATCAGAGAAAGAGGAACTGGCATAGCAATCCATCTTCTTCCA 1365
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 1354 TAAACAATTGGTTCATCAATCAAAGAAAGAGGAATTGGCATAGCAATCCATCTTCTTCTA 1413
Query 1366 CTGTCTTGAAGAACAAACGCAAAAGCAATGCAGGTGACAATAGCGGGAGAGA 1417
| |||| ||||| |||||| ||||||||||||||| || ||||| |||||
Sbjct 1414 CCGTCTCAAAGAATAAACGCCGAAGCAATGCAGGTGAAAACAGCGGAAGAGA 1465
Score = 95.3 bits (51), Expect = 2e-18
Identities = 114/142 (80%), Gaps = 14/142 (10%)
Strand=Plus/Plus
Query 313 ACAACAATTTCCTTAACCTCCACACAGCTACCGCTAACACCACAACCGCAAGC-AGCTCC 371
||||||| ||||| || |||||||||||| | || | | | |||| | | ||||||
Sbjct 421 ACAACAACTTCCTCAATCTCCACACAGCT-GC-CT--CTGC-C-GCCGCTA-CAAGCTCC 473
Query 372 GATTCTCCTTCTTCCGCCGCCGCTGCTGCTAACCAGTGGCTCTCTCGCTCCTCCTCCTTC 431
|||||||||||||||||||||||| |||||||||||||| || ||||| ||||||
Sbjct 474 GATTCTCCTTCTTCCGCCGCCGCT------AACCAGTGGCTCTCACGATCCTCATCCTTC 527
Query 432 CTCCAACGAAACAACAACGCAA 453
||||||||| ||||| |||||
Sbjct 528 CTCCAACGAGGCAACACCGCAA 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89858975550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5