BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489375
Length=487
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25240.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 614 3e-175
> AT5G25240.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages; Has
1807 Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8746605-8747197
REVERSE LENGTH=593
Length=593
Score = 614 bits (332), Expect = 3e-175
Identities = 452/505 (90%), Gaps = 28/505 (6%)
Strand=Plus/Plus
Query 1 CTGTTTTTGTTTTCT-TTATCATGGCCACTGATAGAGAGAATCTGCTCGCTGATGATTAT 59
||| ||||||||| | |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 4 CTG-TTTTGTTTTTTATTATCATGGCCACTGATAGAGAGAATCTGCTCTCCGATGATTAT 62
Query 60 GAAGAAACGGC-GACGTTTTGTGGATGTGGGTTTTTTCGTAAATT-ATGTGT-AGTCCGG 116
||||||||||| | |||||||||||||||||| ||||||| || | || | | ||||
Sbjct 63 GAAGAAACGGCTG-CGTTTTGTGGATGTGGGTACTTTCGTAGTTTCA-GTTTCA-CCCGG 119
Query 117 TGGCGGAGAAGAGACGACGAGTCTCGCAGTCGCGGTGGTTGGAGTGGTTGTTTGCAAGAA 176
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 120 TGGCGGAGAGGAGACGACGAGTCTCGCAGTCGCGGTGGCTGGAGTGGTTGTTTGCAGGAA 179
Query 177 GAAAGAGGAGGAAAGTGGGGAAGTGAGAAACTTAAGGGGCTAAAGGAGATTTCTGAGAAA 236
|||||| |||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 GAAAGAAGAGGGAATTGGGGAAGTGAGAAACTTAAGGGGCTAAAAGAGATTTCTGAGAAA 239
Query 237 ATTGCGGGGCCAAAGTGGAAAAACTTTATAAGAAGTTTTAGTAGTGGCAGAAAGAAGATG 296
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 ATCGCGGGACCAAAGTGGAAAAACTTTATAAGAAGTTTTAGTAGTGGCAGGAAGAAGATG 299
Query 297 AGGAGAGATGTTGATTTTACTTATGATCTGAAAAACTATAGTCTTAATTTCGATGACGGC 356
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGGAGAGATGTTGATTTCACTTATGATCTGAAAAACTATAGTCTTAATTTCGATGACGGC 359
Query 357 GGCTGCGGCGACGGCGAAGATTCTTCACCGGAGAGGTTTGTAGCTCCGGTTGTCATAAAA 416
||| | ||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 360 GGC-G-----ACGGCAAAGATTCTTCACCGGAGAGGTTTGTAGCTCCGGTTGTCATCAAA 413
Query 417 Gtttaatttctt-ttt---actta--tcttttaatt-gtataatttttt---at--t-at 463
||||||||| || ||| ||||| |||||| || |||||||||||| || | ||
Sbjct 414 GTTTAATTTTTTATTTTTTACTTAAATCTTTTTTTTTGTATAATTTTTTTTTATCATTAT 473
Query 464 tggt-ttttatgttaatACAAACAT 487
|||| ||||||||||||||||||||
Sbjct 474 TGGTCTTTTATGTTAATACAAACAT 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23208175914
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5