BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489377
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25270.1 | Symbols: | Ubiquitin-like superfamily protein | ... 2412 0.0
> AT5G25270.1 | Symbols: | Ubiquitin-like superfamily protein
| chr5:8757547-8762757 REVERSE LENGTH=2162
Length=2162
Score = 2412 bits (1306), Expect = 0.0
Identities = 1436/1499 (96%), Gaps = 7/1499 (0%)
Strand=Plus/Plus
Query 121 ATAGTTTCAGCAGTTCTGGGTTCACTTGGGATCTCTAATCCAGAAGGTGGTATTGAAGGG 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 ATAGTTTCAGCTGTTCTGGGTTCACTTGGGATCTCTAATCCAGAAGGTGGTATTGAAGGG 641
Query 181 ATTGAT-ACTATGGGTCCTCTTCATGAGAGGCTGTCTCGGAGTTCTGGTCCTAGCACTGT 239
|| ||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 642 ATCGATGA-TATGGGTCCTCTTCATGAGAGGCTGTCTCGGAGTTCTGGTCCTGGCACTGC 700
Query 240 AAGAGATTCTTCCGGAGGGCGAGCTGCCACACCAAATGCTGTGGACCAGACGTCTACCCC 299
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 701 AAGAGATTCTTCCGGAGGGCGATCTGCCACACCAAATGCTGTGGACCAGACGTCTACTCC 760
Query 300 CTTGACATCTTCACAACCAGCAGCGATTCCAGATTCATTGACAACCTTATCTGAATATCT 359
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 761 CTTGGCATCTTCACAACCAGCAGCGATTCCAGATTCGTTGACAACCTTATCTGAATATCT 820
Query 360 GAATCATCTGAGACAAGAATTTGCTGCTAATGGTAGCAATGCTAATAACTTGCAAGATTC 419
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 821 GAATCATCTCAGACAAGAGTTTGCTGCTAATGGTAGCAATGCTAATAACTTGCAAGATTC 880
Query 420 TGAAAATTCAATGGGCAATGTGCAAGATTCTGTTTCTACTACTGGAGAGAGTCGGATTCC 479
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 881 TGAAAATTCAGTGGGCAATGTGCAAGATTCTGCTTCTACTACTGGAGAGAGTCGGATTCC 940
Query 480 AAGACCATCTCATTTGGCAGAAGTGCTGCAATCGACAAGGCAATTGTTGATCGGTGAAGT 539
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 941 AAGACCATCTCATTTGGCAGAAGTGCTGCAATCAACAAGGCAATTGTTGATCGGTGAAGT 1000
Query 540 AGCAGATTGCTTAACTAATCTTTCGAGGCAGCTCGTGGATCATGTAAATGTGACCGATCC 599
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 AGCAGATTGCTTATCTAATCTTTCGAGGCAGCTCGTGGATCATGTAAATGTGACCGATCC 1060
Query 600 GCCAACCCGAAGGTTGTGCCAGTCAAACATGCTTCAATCAGGATCCCTCTTGGAGAGTTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 GCCAACCCGAAGGTTGTGCCAGTCAAACATGCTTCAATCAGGATCCCTCTTGGAGAGTTT 1120
Query 660 AGGCATTTCACTCCTGGAGCTTGGCCGTGCCACGATGATGCTTCGTTTGGGACAAACACC 719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1121 AGGCATTTCACTCCTGGAGCTTGGCCGTGCCACCATGATGCTTCGTTTGGGACAAACACC 1180
Query 720 TGATGATGCTGTTGTTAATGCTGGGCCTGCAGTGTTCATATCCCCTACAGGGCGAAATCC 779
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1181 TGATGATGCTGTTGTTGATGCTGGACCTGCAGTGTTCATATCCCCTACAGGGCGAAATCC 1240
Query 780 ATTGCCGTCACACTCCTCTCGGCTGGGGACGAGTATTGGAGGCTTACAAGCAGGAACCGC 839
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1241 CTTGCCGTCACACTCCTCTCGGCTGGGCACGAGTATTGGAAGCTTACAAGCAGGAACCGC 1300
Query 840 ACATTCTAACCCTTTTGCTGGACAATCACTTGCCTCTGCCCCAAGAAATATTGAGATAAG 899
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 ACATTCTAACCCCTTTGCGGGACAATCACTTGCCTCTGCCCCAAGAAATATTGAGATAAG 1360
Query 900 AATACGTACAGGATCTTGGGTACCCGCCAGTGGGACCAACCAGAGAGAAGAAAGTACTAC 959
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1361 AATACGTACAGGATCTTGGGTGCCCGCCAGTGGGACCAACCAGAGAGAGGAAAGTACTAC 1420
Query 960 ACAACAAACCCCTGGGCAGTCAATCCCTTC-AGCACCTAGTAGCACTACTGATTCTGCCC 1018
||||||||||||||||||| |||||||||| | |||| || |||||||||||| ||||||
Sbjct 1421 ACAACAAACCCCTGGGCAGACAATCCCTTCTA-CACCCAGCAGCACTACTGATCCTGCCC 1479
Query 1019 CCTCAACAAGAGGTTCGGCTGAACCTCCTCGAAACCCTGTGGCCTTAGTTATACCAGTTG 1078
||||||| |||||| | ||||||||| |||||| |||||||||||||||||||| ||||
Sbjct 1480 CCTCAACGAGAGGTCCATCTGAACCTCTTCGAAATCCTGTGGCCTTAGTTATACCTGTTG 1539
Query 1079 TTGCTCGATATCAGCAGATATCTCTTGGTGAACGTAGCTCTACTGGATTGGATGGTGTAC 1138
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1540 TTGCTCGATATCAGCAGATATCTCTTGGTGGACGTAGCTCTACTGGATTGGATGGTGTAC 1599
Query 1139 ATCAGCCTGTTACTGAACCTTCTAGGCAGCCACAGAGCGCCAGTACTCCAGGAAGAGAAG 1198
||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1600 ATCAGCCTGTTACTGAATCTTCTAGGCAGCCACAGAGCGTCGGTACTCCAGGAAGAGAAG 1659
Query 1199 GTGATAGCAGTGCTTCTCCTGGCGGTCGGGGTTTGTCTGAATTGAGAAACAGAATCCATC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 GTGATAGCAGTGCTTCTCCTGGCGGTCGGGGTTTGTCTGAATTGAGAAACAGAATCCATC 1719
Query 1259 AGTTTTTGAGGCCCTTATCTCGTCGAGAACACCAAGCCGGGAGTTCGGAGTCTCAGGGTG 1318
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1720 AGTTTTTGAGGCCCTTATCTCGTCGAGAAAACCAAGCCGGGAGCACGGAGTCTCAGGGTG 1779
Query 1319 CAGCAAATCCCTCTGCCACAGCGTCCACAGAAACAAACGAAGCAGTTGCAAATGCACAAG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1780 CAGCAAATCCCTCTGCCACAGCGTCCACAGAAACAAACGAAGCAGTTGCAAATGCACAAG 1839
Query 1379 CAGAGCCGGCAACTATGATGGATGAAGGGAATTTCATATCAAGTGTTCTTCAGCAGATCA 1438
|||||| ||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1840 TAGAGCCAGCAACTACGACAGATGAAGGGAATTTCATATCGAGTGTTCTTCAGCAGATCA 1899
Query 1439 TGCCCTTTATATCTCAAAACGTAGCCTCCTCAAGCTCAGGTGAAGCTGCTACAGGCAGAG 1498
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1900 TGCCGTTTATATCTCAAAACGTAGCCTCCTCAAGCTCAGGTGAAGCTGCTACAGGCAGAG 1959
Query 1499 GCAGCAATAGCAGTAGACAAGCCTCTTCAAGAGAGGCACAGGAGGAGGAAGGTACAGCGC 1558
|||||||||| ||||||||||||||| ||||||||| |||||||||||||||||| ||
Sbjct 1960 GCAGCAATAG---TAGACAAGCCTCTTCGAGAGAGGCAGAGGAGGAGGAAGGTACAGAGC 2016
Query 1559 GAGGGGATTCAAATCGGAGACCTGAACCACCGTCACCTCCAGAGTCGAAACGTCAGAGG 1617
||||| |||||| |||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 2017 GAGGGAATTCAACTCGGAGACCTGAACCACCATCACCTCCAGAGTCAAAACGTCAGAGG 2075
Score = 198 bits (107), Expect = 1e-49
Identities = 115/119 (97%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGACAATGGGAAAGATGAAATTATGGTCGAGGCATCTCAATGCGCCAGTGCTATG 60
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 156 ATGGGAGACAATGGCAAAGATGAAATTATGGTCGAGGCATCTCAATGCGCTGGTGCTATG 215
Query 61 GTTGAGATAAAGATAAAGACTTTGGATTCTCAAACGTACACCTTACGTGTAGATAAATG 119
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 216 GTTGAGATAAAGATAAAGACGTTGGATTCTCAAACGTACACCTTACGTGTAGATAAATG 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85391127045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5