BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489379
Length=1947
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25280.1 | Symbols: | serine-rich protein-related | chr5:87... 1382 0.0
AT5G11090.1 | Symbols: | serine-rich protein-related | chr5:35... 339 8e-92
> AT5G25280.1 | Symbols: | serine-rich protein-related | chr5:8773789-8775487
FORWARD LENGTH=1699
Length=1699
Score = 1382 bits (748), Expect = 0.0
Identities = 999/1108 (90%), Gaps = 66/1108 (6%)
Strand=Plus/Plus
Query 1 GAACCAATCACCCTTAGGGGACACTT-AAGAGAGAAAC-AA-CCAAATCCTTCTAAAAAA 57
|||||||||||||| ||||||||||| ||||||||||| || || | ||||||||| |
Sbjct 4 GAACCAATCACCCTAAGGGGACACTTAAAGAGAGAAACAAATCC---TTCTTCTAAAATA 60
Query 58 TTCTTCAATCTTCTTCTCGAAGCTTCTCC---AATGGCGATTACATCTTCTAGAACCACC 114
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 61 TTCTTCAATCTTCTTCTCGAAGCTTCTCCAAAAATGGCGATTACTTCTTCTAGAACCACC 120
Query 115 AGATCAAACGGATCTGC-T--CTCCGATCCAAATCACCGTCCGGCCGATTCTGTGGCGTA 171
||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 121 AGATCAAACGGATCTGCTTCGCTCCGATCCAAATCACCGTCCGGTCGATTCTGTGGCGTT 180
Query 172 TACT-----C--AT--CATCATCATCTCCGTCGTCGTCAGGTTTCGCTTCTTCCACAAGC 222
|||| | || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TACTCAAACCGTATGCCGTCATCATCTCCGTCGTCGTCAGGTTTCGCTTCTTCCACAAGC 240
Query 223 TCAAGTTTCTCGTCACCGTCTACAGCGTTTTTCAGCAGCCACAATCAGAACAACCACCAC 282
||||||||||| |||||||||||||||||||||||||||||||||||| || || ||
Sbjct 241 TCAAGTTTCTCCTCACCGTCTACAGCGTTTTTCAGCAGCCACAATCAG---AA-CA--AC 294
Query 283 CATAACCACCAACACAGATCTGCATCTCCGACGCGTGTGAATCTATTCACATCAGCTCCG 342
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 295 C---ACCACCAACACAGATCTGCTTCTCCGACGCGTGTGAATCTATTCACATCAGCTCCG 351
Query 343 ATGACGCAATCGTTTCGTTACTCGATTGATAACAGATCTATATCACCGAATCGATCCATC 402
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 352 ATGACGCAATCGTTTCGTTACTCAATCGATAACAGATCTATATCACCGAATCGATCCATC 411
Query 403 GCTGTTTCTTCCAACAAACCTAGTAATCATCATAAGATTCCGGATTCGAGAAGGAGATGT 462
||||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||
Sbjct 412 GCTGTTTCTTCCAACAAACCTAGCAATCATCACAAGATTCCGGATTCGAGGAGAAGATGT 471
Query 463 ATGTGTTCTCCGACGACGCATCCTGGTTCTTTCCGGTGTAGTCTACACAAGAACGTCGCG 522
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 472 ATGTGCTCTCCGACAACGCATCCTGGTTCATTCCGGTGTAGTCTACACAAGAACGTCGCG 531
Query 523 AATCCACACGGTCAAGGTACAGGGACGTATCCGACGAATAGTTTGAATATGCGTAGATCT 582
|||||||| ||||||||||||| ||||| | |||||| | |||||||||||| |||||
Sbjct 532 AATCCACATGGTCAAGGTACAGCTTCGTATACAACGAATGGATTGAATATGCGTCGATCT 591
Query 583 GCGATGACGAATTCGCTTGTGAGAATCGGTGGTGTTGAAGGTGAATGGGTGAGAAGAGCT 642
|||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 592 GCGATGACGAATTCTCTTGTGAGAATTGGTGGTGTTGAAGGTGAATGGGTGCGAAGAGCT 651
Query 643 TTGACTACTTTGATTCGACCATCGTCACATCAACTCAAGAGAAGATCTGCGTATGAACCT 702
||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||| |||
Sbjct 652 TTGACTACTTTGATTAGACCATCTTCACATCAACTAAAGAGAAGATCTGCTTATGAGCCT 711
Query 703 CGTCGTAGCAGACTCGCATCTATGTCGAAAGCAGAAGATCTTTGAATCT-T-T-CAGGTT 759
|||||||| |||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 712 CGTCGTAGTAGACTCGCATCTATGTCGAAAGCAGAAGATCTTTGAATCTCTCTTCAGGTT 771
Query 760 TGTTCTTGTTTTTGAAATACTCAGATCTGCCATG------T-----C--GGAGC----T- 801
||||||||||||||| |||||||||||||||||| | | ||||| |
Sbjct 772 TGTTCTTGTTTTTGATATACTCAGATCTGCCATGAACGAGTTGAATCAAGGAGCAGAATC 831
Query 802 G-AG-T----CATACCGGACCGAGTGAAATTCGGAGTTGAGTTAAACCGGACCGAGTTAT 855
| || | ||||||||||||||| |||||||||| ||||||| |||||||||||||||
Sbjct 832 GGAGCTGAGTCATACCGGACCGAGTCAAATTCGGAGCTGAGTTATACCGGACCGAGTTAT 891
Query 856 GTAAA-CGGTGACCAAGACGACACCGTTTTTGTTTTGTTGGGTGGGAgatgagatgatga 914
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GTAAAACGGTGACTAAGACGACACCGTTTTTGTTTTGTTGGGTGGGAGATGAGATGATGA 951
Query 915 tgatgatgatgCATTGTACATACACATATTTGCTTATTGAAGCAGAG-aaaaaaaTTTCG 973
||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 952 TGATG------CATTGTACATACACATATT-GCTTATTGAAGCAGAACAAAAAAATTTCG 1004
Query 974 CAAGTCGAAAGTATCTAGAAATCTAAAATTGGAAAATAGTAGTGACGAATTGGGTAATTA 1033
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1005 CAAGTCGAAAGTATCTAGAAATCTAAAAATGGAAAATAGTAGTGACGAATTGGGTAATTA 1064
Query 1034 AAATCTGGAAAAGGACTTAGTAGTAAAT 1061
||||||||||||||||||||||||||||
Sbjct 1065 AAATCTGGAAAAGGACTTAGTAGTAAAT 1092
Score = 226 bits (122), Expect = 7e-58
Identities = 146/157 (93%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 1062 TCTCCATCGTTCGTTGCCTTCACCGTTTGTTTGTTCCGTCAAGTCAACGTTCTCCATTCT 1121
||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1125 TCTCCATTGTTCGTTGCCTTCACCGTTAGTTTGTTCCGTCAAGTCAACGTTCTCTATTCT 1184
Query 1122 -C--CGTTGATCCGTTCTGTTTGCCGTTAACCGTCGTCGTGTGTTATGTGTGTTGCGTTA 1178
| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1185 CCGTCGTTGACCCGTTCTGTTTGCCGTTAACCGTCGTCGTGTGTTATGTGTGTTCCGTTA 1244
Query 1179 ATA-TTCCCCAGGTATGTGTTGTTCGTCGTGTCAGGT 1214
|| ||| |||||||||||||||||||||||||||||
Sbjct 1245 TTATTTCTCCAGGTATGTGTTGTTCGTCGTGTCAGGT 1281
Score = 134 bits (72), Expect = 4e-30
Identities = 121/142 (85%), Gaps = 14/142 (10%)
Strand=Plus/Plus
Query 1353 TTTTGGAGCTAAAGAATGTGAAAGATTCTAAGGAATCAGATTTTTCCTAAACATCTCAAG 1412
|||||||||| |||||||||||||||| ||||||||||| |||| | | ||| |
Sbjct 1571 TTTTGGAGCTGGAGAATGTGAAAGATTCGAAGGAATCAGA-TTTT--T---C-TCT--GG 1621
Query 1413 AATTTGTGAATCACAGATTGAGTGAGATTCCTGAAACGGTTGAGGTTAAAGTGAAT-GAT 1471
||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct 1622 AATTTGTGAATCACAGATT---T-AGATTCCTGAAACGGTTGAGGTTAAAGTGAAAAGAT 1677
Query 1472 TCAATGGAATCTTATTTTTACC 1493
|||||| |||| ||||||||||
Sbjct 1678 TCAATGAAATCATATTTTTACC 1699
> AT5G11090.1 | Symbols: | serine-rich protein-related | chr5:3524680-3525846
FORWARD LENGTH=1167
Length=1167
Score = 339 bits (183), Expect = 8e-92
Identities = 515/669 (77%), Gaps = 48/669 (7%)
Strand=Plus/Plus
Query 87 AATGGCGATTACATCTTCTA-GAACCACCAGATCAAACGGATCTGCT-CTCCGATCCA-A 143
||||| || |||||| || | |||||| || ||||||||| | | | || || | || |
Sbjct 116 AATGGTGACTACATCGTC-ACGAACCA--AG-TCAAACGGA-CCGGTGCTTCG-TTCACA 169
Query 144 ATCACCGTCCGGCCGATTCTGTGG-CGTATACTCATCA-TC-AT-CATC-TCCGTCGTCG 198
||||||||| || ||||| || || || |||||| | | | | || | | || ||
Sbjct 170 ATCACCGTCAGGTCGATTTTGCGGTGGT-TACTCAAGAGCCGTTCCGTCAT-CTTCTTCA 227
Query 199 TCAGGTTTCGCTTCTTCCACAAGCTCAAG-TTTCTCGTCACCGTC-TACAGCGTTTTTCA 256
|||| ||||||||| || || || || || ||| || || ||||| | |||| |||||||
Sbjct 228 TCAGCTTTCGCTTCATCAACGAGTTCTAGCTTT-TCATCTCCGTCGT-CAGCTTTTTTCA 285
Query 257 GCAGCCACAATCAGAAC-A-ACCACCACCATAACCACCAACACAGATCTGCATCTCCGAC 314
||| ||| ||| || | | || | || | |||| || | ||||||| || |||||
Sbjct 286 GCAATCACCGTCATCACGAGAGCA--ATCACAGTCACC-AC-C-GATCTGCGTCACCGAC 340
Query 315 GCGTGTGAATCTATTCACATCAGC-TCCGATGACGCAATCGTTTCGTTACTCGATTGATA 373
||||||||||| | |||| | || |||||| | || |||||||||||||| | ||||
Sbjct 341 TCGTGTGAATCTCTACACAGC-GCAACCGATGTCTCAGTCGTTTCGTTACTCTCTCGATA 399
Query 374 ACAGATCTATATCACCGA--ATC-GATCCATCGCTGTTTCTTCCAA-CA--AACCTAGTA 427
|||||||||||| |||| | | ||| ||| | ||||| || || ||| ||
Sbjct 400 GCAGATCTATATCTCCGACTAACAAATCGATCTCCGTTTCGAAGAATCAGCCACCGAGCC 459
Query 428 ATCATCATAAGATTCCGGATTCGAGAAGGAGATGTATGTGTTCTCCGACGACGCATCCTG 487
|| |||| |||| | | || ||||||||||||||||||||||||||||||||| |
Sbjct 460 ATAATCACAAGA-T-C----TC---AAGGAGATGTATGTGTTCTCCGACGACGCATCCAG 510
Query 488 GTTCTTTCCGGTGTAGTCTACACAAGAACGTCGCGAATCCACACGGTCAAGGTACAGGGA 547
| |||||| | || |||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 511 GATCTTTCAGATGCAGTCTACATAAGAACGTAGCGAATCCACATGGTCAAGGTACAGCTT 570
Query 548 CGTATCCGACGAATAGTTTGAATATGCGTAGATCTGCGATGACGAATTCGCTTGTGAGAA 607
||||| | |||||| | |||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 571 CGTATACAACGAATGGATTGAATATGCGTCGATCTGCGATGACTAATTCGCTGGTGAGAA 630
Query 608 TCGGTGGTGTTGAAGGTGAATGGGTGAGAAGAGCTTTGACTACTTTGATTCGACCATCGT 667
| |||||||||||||| || ||||||||||||||||||||||||||||||||||| || |
Sbjct 631 TTGGTGGTGTTGAAGGAGAGTGGGTGAGAAGAGCTTTGACTACTTTGATTCGACCTTCTT 690
Query 668 CACATCAACTCAAGAGAAGATCTGCGTATGAACCTCGTCGTAG-CAGACTCGCA-TCTAT 725
| ||||| || || ||| || |||| ||| | || |||| ||| | ||||| || || ||
Sbjct 691 CGCATCATCTGAAAAGACGAGCTGCTTATCAGCCACGTCCTAGTC-GACTCTCAATC-AT 748
Query 726 GTCGAAAGC 734
| |||||||
Sbjct 749 GGCGAAAGC 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96435246945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5