BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489382
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25310.1 | Symbols: | Exostosin family protein | chr5:87848... 1720 0.0
> AT5G25310.1 | Symbols: | Exostosin family protein | chr5:8784820-8787366
FORWARD LENGTH=1574
Length=1574
Score = 1720 bits (931), Expect = 0.0
Identities = 1069/1137 (94%), Gaps = 4/1137 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAGGTTTAAGGTTTATGTATATGAAGAAGGCGAGCCACCGTTAGTTCACGAT 60
|||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||
Sbjct 439 ATGGAGAAGAGGTTTAAGGTGTATGTATACGAAGAAGGCGAGCCACCGCTAGTTCACGAT 498
Query 61 GGACCGTGTAAGAGTGTTTACGCGGTTGAAGGGAGATTTATAACGGAGATTGAGAAAATG 120
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
Sbjct 499 GGACCGTGTAAGAGTGTTTACGCGGTTGAAGGGAGATTCATAACTGAGATGGAGAAAA-G 557
Query 121 -AGGACGAAGTTTCGTACTTATGATGCGAACCAAGCTTATGTTTACTTCTTGCCGTTTAG 179
||||| |||||||||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct 558 AAGGACTAAGTTTCGTACTTATGATCCTAACCAAGCTTATGTTTACTTCTTGCCATTTAG 617
Query 180 TGTTACTTGGCTGGTTCGATACTTATACGAAGGAAATTCTGATGCTAAGCCTTTGAGAAC 239
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 618 TGTTACTTGGCTGGTTCGATACTTATACGAAGGCAATTCTGATGCTAAGCCTTTGAAAAC 677
Query 240 ATTTGTTTCTGATTATATCAGATTAGTATCTACTAATCATCCGTTTTGGAATCGAACTAA 299
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 678 ATTTGTTTCCGATTATATCAGATTAGTATCTACTAATCATCCTTTTTGGAATCGAACTAA 737
Query 300 TGGAGCTGATCACTTCATGCTTGCTTGTCACGATTGGGGACCTCTGACTTCACAAGCTGA 359
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 738 TGGTGCTGATCACTTCATGCTTACTTGTCACGATTGGGGACCTCTGACTTCACAAGCTAA 797
Query 360 TA-ATGATTTGTTCAATACATCGATTCGAGTTATGTGTAATGCTAATTCATCAGAAGGGT 418
|| | ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 798 TAGA-GATTTGTTCAACACTTCGATTCGAGTTATGTGTAATGCTAATTCATCAGAAGGGT 856
Query 419 TTAATCCTTCAAAAGATGTGACTCTTCCTGAGATTAAACTCTATGGCGGTGAAGTTGATC 478
|||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 857 TTAATCCTACTAAAGATGTGACTCTTCCTGAGATCAAACTCTATGGTGGTGAAGTTGATC 916
Query 479 CCAAACTCAGGTTATCTAAAACGTTATCAGCTTCTCCGCGGCCTTACCTCGGGTTCTTTG 538
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 917 ACAAACTCAGGTTATCTAAAACCTTATCCGCTTCTCCGCGGCCTTACCTCGGGTTCTTCG 976
Query 539 CAGGCGGTGTTCACGGTCCAGTGAGACCGATCCTTTTGAACCACTGGAAACAGCGTGACC 598
|||||||||| |||||||| || |||||||| ||||| || |||||||||||||||||||
Sbjct 977 CAGGCGGTGTCCACGGTCCGGTTAGACCGATTCTTTTAAAACACTGGAAACAGCGTGACC 1036
Query 599 CGGATATGCCTGTATATGAATACCTTCCTAAACACTTAAACTACTATGATTTCATGAGAA 658
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TGGATATGCCTGTTTATGAATACCTTCCTAAACACTTAAACTACTATGATTTCATGAGAA 1096
Query 659 GTTCAAAGTTCTGTTTCTGTCCCAGTGGCTATGAGGTAGCTAGCCCTAGAGTCATTGAAG 718
|||||||||||||||| ||||||||||| |||||||||||||| ||| ||||||| ||||
Sbjct 1097 GTTCAAAGTTCTGTTTTTGTCCCAGTGGGTATGAGGTAGCTAGTCCTCGAGTCATCGAAG 1156
Query 719 CCATCTACTCCGAGTGTATCCCGGTCATTCTCTCTGTTAACTTCGTGTTACCATTCACTG 778
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1157 CCATCTACTCTGAGTGTATCCCCGTCATTCTCTCGGTTAACTTCGTGTTACCATTCACTG 1216
Query 779 ATGTTCTTCGTTGGGAGACTTTCTCTGTACTGGTCGATGTTTCAGAGATTCCGAGGTTGA 838
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1217 ATGTTCTTCGTTGGGAGACTTTCTCTGTACTGGTCGACGTTTCAGAGATTCCGAGGTTGA 1276
Query 839 AGGAGATTCTCATGTCGATCTCTGATGAGAAATACGAATGGCTTAAACGTAACTTGCGGT 898
|||||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||
Sbjct 1277 AGGAGATTCTCATGTCGATCTCCAATGAGAAATATGAATGGCTTAAAAGTAACTTGAGGT 1336
Query 899 ATGTGAGGAGACATTTCGAGCTTAACGATCCTCCTAAGAGGTTTGATGCGTTTCATTTGA 958
||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||
Sbjct 1337 ATGTGAGGAGACATTTCGAGCTTAACGATCCTCCTCAGAGATTTGATGCATTTCACTTGA 1396
Query 959 CTCTTCACTCCATTTGGTTACGTAGACTTAACTTGAGGCTTACGTAAGGTAAAGTTCTGT 1018
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1397 CTCTTCATTCCATTTGGTTACGTAGACTTAACTTGAAGCTTACGTAAGGTAAAGTTCTGT 1456
Query 1019 TAGAATTTGTAACTCATACCTCAAAAATGTAGTAACCCTTAAAAGTCTAGATATATTTGA 1078
|||| ||||||||||||| |||| ||||||||||| ||||||||||||||||| |||||
Sbjct 1457 TAGATTTTGTAACTCATATCTCAGAAATGTAGTAAACCTTAAAAGTCTAGATAGATTTGT 1516
Query 1079 TGTTATTAGTTAATGAATAAAGAATTATTGCAAATTTCTAAGAAATATAGACGATCT 1135
|||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 1517 TGTTATTAGTTAATGAATAAAGAATTGTTGCAACTTTCTAAGAAATATAGATGATCT 1573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55672404405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5