BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489384
Length=1253
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25330.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1808 0.0
> AT5G25330.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr5:8791513-8792813
FORWARD LENGTH=1301
Length=1301
Score = 1808 bits (979), Expect = 0.0
Identities = 1130/1204 (94%), Gaps = 5/1204 (0%)
Strand=Plus/Plus
Query 31 TAAAAATGTTAGCCTTATATTTCATTCTACTCGTATGCGTG-CCTCTAGGTGTCATCATG 89
|||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||||
Sbjct 47 TAAAAATGTTGGCCTTATATTTCATTCTACTCGTCTGCGTGCCCT-TAGGTGTCATCATG 105
Query 90 ACCTTTACGAGTCCTCGACTAGCTATTACTGTGGCCGTCACTAAGCCGGCGGTCTTAGTA 149
||| | ||||||||||||||||| || ||||||||||||||| |||||||||||||| ||
Sbjct 106 ACCGTGACGAGTCCTCGACTAGCCATCACTGTGGCCGTCACTCAGCCGGCGGTCTTAATA 165
Query 150 ATACAAAATTCCAATAATACCCTTACATCTCCTCGAGTAATTACTTCTCAGCCACTGGAT 209
||||||||| ||||||||| ||| |||||||||| ||||||||| |||||||||||||||
Sbjct 166 ATACAAAATCCCAATAATAACCTCACATCTCCTCAAGTAATTACATCTCAGCCACTGGAT 225
Query 210 CACGATGACTTACTCCTTCGTCAAGCTTCTAAAGTCGACCTAAACCCTTCACCCAAATTT 269
|||||||| ||||||||||||||||||||||||| | ||| |||||||||||| ||||||
Sbjct 226 CACGATGAGTTACTCCTTCGTCAAGCTTCTAAAGCCAACCCAAACCCTTCACCTAAATTT 285
Query 270 CCCAAAAAACTCGCTTTCATGTTCTTAACAACTAACTCTCTTCCATTTGCACCGCTTTGG 329
||||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 286 CCCAAAAAACTAGCTTTCATGTTCTTAACAACGAACTCTCTTCCACTTGCACCACTTTGG 345
Query 330 GAGCtttttttCAACCAAAGCTCTGATCATAAGTCTCTTTACAATGTCTACGTCCATGTA 389
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 346 GAGCTTTTTTTCAACCAAAGCTCTCATCACAAGTCTCTTTACAATGTCTACGTCCATGTA 405
Query 390 GACCCGACTCAAAAACACGAACCGGGTTCTTACGGCACGTTTCATAACCGGATCATACCT 449
|||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||
Sbjct 406 GACCCGACTCAAAAACACAAACCGGGTTCTCACGGCACATTTCAAAACCGGATCATACCA 465
Query 450 TCCTCAAAACCGGCTTACCGGCACACCCCAACACTTATCTCAGCCGCACGTCGTTTACTA 509
|||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct 466 TCCTCAAAACCGGCTTACAGGCACACCCCAACCCTCATCTCAGCCGCACGTCGTTTACTA 525
Query 510 GCTCATGCGCTTCTCGATGACCCGTCTAATTACATGTTTATCCTTCTCTCCCCTTCTTGC 569
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 GCCCATGCGCTTCTCGAGGACCCGTCTAATTACATGTTTATCCTTCTCTCCCCTTCTTGC 585
Query 570 ATTCCTTTGCACTCCTTTAACTTCACTTACAAGACACTAGTCTCATCCACAAAGAGCTTC 629
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 586 ATTCCTTTGCACTCCTTTAACTTCACTTACAAGACACTAGTCTCCTCCACAAAGAGCTTC 645
Query 630 ATCGAGATTCTTAAAGACGAACCAGGGTGGTACGAAAGGTGGGCAGCGCGTGGACCCTAC 689
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 ATCGAAATTCTCAAAGACGAACCAGGGTGGTACGAAAGGTGGGCAGCGCGTGGACCCTAC 705
Query 690 GCGATGTTCCCCGAGGTACCACCCGAGGAGTTTCGAATCGGCTCACAGTTCTGGACATTG 749
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct 706 GCGATGTTCCCCGAGGTACCACCCGAGGAGTTCCGAATAGGATCACAGTTCTGGACGTTG 765
Query 750 ACACGAGCACATGCGCAGTTAGTGGTGAGTGACGTGGAGATATGGTCCAAGTTTAACAAG 809
|||||||| ||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 766 ACACGAGCCCATGCGCTGATGGTGGTGAGTGACGTGGAGATATGGTCCAAGTTTAACAAG 825
Query 810 TCTTGCGTAAGAAAAGACATATGTTACCCCGAGGAACATTACTTCCCTACTCTCCTCCAC 869
|| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 826 TCATGCGTAAGAGAAGACATATGTTACCCCGAAGAACATTACTTCCCTACTCTCCTTAAC 885
Query 870 ATGCGAGACCCACAAGGGTGTGTATCCGCTACGGTCACGCACGTTGATTGGAGCGTCAAC 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 ATGCGAGACCCACAAGGGTGTGTATCCGCTACGGTCACGCACGTTGATTGGAGCGTCAAC 945
Query 930 GAACATGGTCATCCTCGGACGTATAAACCGTCGGAGGTTAGGGCTGAGCTTATACAAAAG 989
|| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 946 GACCATGGTCATCCTCGGACATATAAACCGTTGGAGGTTAGGGCTGAGCTTATACAAAAG 1005
Query 990 CTGCGAAGTGCACGGCTTAGGTATGGGGACGGCAACCGAACGAGGAAAGATCCATTTCTT 1049
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 CTGAGAAGTGCACGGCCTAGGTATGGGGACGGCAACCGAACGAGGAAAGATCCATTTCTT 1065
Query 1050 TTCGCTCGGAAATTTTCTCCGGCCGGGATCAGTCAGTTGATGAACATAACTCGAAATGTC 1109
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1066 TTCGCCCGGAAATTTTCTCCGGCCGGGATCAATCAGTTGATGAACATAACTCGAAGTGTC 1125
Query 1110 ATCTTTAACGATTTGGCTCTCGTGTAAAGTATAGAATACGTTGTTT-ATGTTTAGACTTT 1168
||||||||||||| |||||| ||||||| ||||| || | | ||| | ||| |||||||
Sbjct 1126 ATCTTTAACGATTCGGCTCTTGTGTAAATTATAGTATTTGGTATTTCA-GTTGAGACTTT 1184
Query 1169 AGGGGACTTGATTTGGTTTCATTTTAAGATTTTTCTTATGTTTAAACATGTATGCGTGGA 1228
|||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 1185 AGGGGACTTGATTTGGTTTCATTTGA-GATTTTTCGTATGTTTAAACATGTATGCGTGGA 1243
Query 1229 TGTA 1232
||||
Sbjct 1244 TGTA 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61596068715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5