BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489386
Length=2447
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25350.1 | Symbols: EBF2 | EIN3-binding F box protein 2 | ch... 2329 0.0
AT5G25340.1 | Symbols: | Ubiquitin-like superfamily protein | ... 442 8e-123
> AT5G25350.1 | Symbols: EBF2 | EIN3-binding F box protein 2 |
chr5:8794252-8797020 REVERSE LENGTH=2600
Length=2600
Score = 2329 bits (1261), Expect = 0.0
Identities = 1423/1499 (95%), Gaps = 19/1499 (1%)
Strand=Plus/Plus
Query 915 CTGTTACTGATCTTGTGCTTCATGGCCTTCAAGGTGTGAATGAGAAAGGCTTCTGGGTTA 974
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1031 CTGTTACTGATCTTGTGCTTCATGGACTTCAAGGTGTGAATGAGAAAGGCTTCTGGGTTA 1090
Query 975 TGGGAAATGCAAAAGGGCTGAAGAAACTGAAGTCCCTCTCAGTAATGTCGTGCCGAGGCA 1034
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1091 TGGGAAATGCAAAAGGGTTGAAGAAACTGAAGTCCCTCTCAGTAATGTCGTGCAGAGGTA 1150
Query 1035 TGACGGATGTTGGGCTTGAAGCTGTTGGAAATGGTTGCCCTGATCTGAAGCATGTCTCTC 1094
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 TGACCGATGTTGGGCTCGAAGCTGTTGGAAATGGTTGCCCTGATCTGAAGCATGTCTCTC 1210
Query 1095 TGAACAAATGTTTGCTTGTTTCTGGTAAAGGACTTGTCGCTTTGGCCAAATCTGCATTGT 1154
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 TGAACAAATGCTTGCTTGTTTCTGGTAAAGGACTTGTCGCTTTGGCCAAATCTGCATTGT 1270
Query 1155 CGCTGGAAAGTTTGAGACTTGAAGAATGCCACAGGATCAACCAGTTTGGTCTTATGGGTT 1214
| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 CACTTGAAAGTTTGAAACTTGAAGAATGCCACAGGATCAACCAGTTTGGTCTTATGGGTT 1330
Query 1215 TTCTCAGGAACTGTGGCTCAAAGTTGAGAGCTTTCTCTTTGGCAAACTGTCTGGGCATCA 1274
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1331 TTCTCATGAACTGTGGCTCAAAGTTGAAAGCTTTCTCTTTGGCAAACTGTCTGGGCATCA 1390
Query 1275 GTGACTTCAACTTAGAATCAC-CTCTGCCATCACCCAGTTGCAGCTCTTTACGTTCTCTG 1333
|||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1391 GTGACTTCAACTCAGAATC-CTCTCTGCCATCACCCAGTTGCAGCTCTTTACGTTCTCTG 1449
Query 1334 TCAATCCGATGCTGCCCTGGGTTTGGGGATGCAAGTCTCACTTTCTTGGGAAATTTCTGT 1393
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1450 TCAATCCGATGCTGCCCTGGGTTTGGGGATGCAAGTCTCGCTTTCTTGGGAAAGTTCTGT 1509
Query 1394 CATCAGCTTCAGGATGTTGAACTTTGTGGACTGAATGGAGTGACAGATGCAGGTGTACGC 1453
||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct 1510 CATCAGCTTCAGGATGTTGAACTCTGTGGACTAAACGGAGTGACAGATGCAGGTGTGCGC 1569
Query 1454 GAGTTGCTTCAGAGCAACAATGTTGGTCTAGTGAAGGTGAACCTGAGCGGATGTATCAAT 1513
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1570 GAGTTGCTACAGAGCAACAATGTTGGTCTAGTGAAGGTGAACCTGAGCGAATGTATCAAT 1629
Query 1514 GTTTCAGACAACACAGTCTCTGCAATTTCCATTTGCCACGGACGCACATTGGAGTCTCTT 1573
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1630 GTTTCAGACAACACAGTCTCTGCAATTTCTGTTTGCCACGGACGCACATTGGAGTCTCTT 1689
Query 1574 AACCTTGACGGCTGCAAGAACATCAGTGACGCAAGCCTTGTCGCAGTAGCCAAGAACTGC 1633
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1690 AACCTTGACGGCTGCAAGAACATCACAAACGCAAGCCTTGTCGCAGTAGCCAAGAACTGC 1749
Query 1634 TACTCAGTCAATGACCTTGACATCTCAAATACTTTGGTCTCAGATCACGGAATCAAGGCT 1693
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 TACTCAGTCAATGACCTTGACATCTCAAATACTTTGGTCTCAGATCACGGAATCAAGGCC 1809
Query 1694 TTGGCATCTTCTCCCAACCATCTGAATCTTCAGGTTCTTTCTGTTGGTGGCTGCTCAGCG 1753
|||||||||||||| |||||||||||||||||||||||||| |||| |||||||| |
Sbjct 1810 TTGGCATCTTCTCCTAACCATCTGAATCTTCAGGTTCTTTCCATTGGCGGCTGCTCCTCA 1869
Query 1754 ATTACAGACAAAAGCAAGGCATGCATACAAAAACTCGGCCGCACGCTTTTAGGACTAAAC 1813
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1870 ATTACAGACAAAAGCAAGGCATGCATACAAAAACTCGGCCGCACGCTTTTGGGATTAAAC 1929
Query 1814 ATCCAACGTTGTGGCAGAATCAGCAGCAGCACTGTGGATACTCTTCTCGAAAATCTATGG 1873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1930 ATCCAACGTTGTGGCAGAATCAGCAGCAGCACTGTGGATACTCTTCTCGAAAATCTATGG 1989
Query 1874 AGGTGCGATATACTCTACTAAA-TCCCACTTTTTCTACAAAACCGTAGTATCATCATCAT 1932
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1990 AGGTGCGATATACTCTACTAAATTCCCACTTTTTCTACAAAACCTTAGTATCATCATCAT 2049
Query 1933 CAGTCCAAGTCTTTTTCCTAGGTTTTGGTCACTAAAACCCATAGATTCCACCTAGAACTT 1992
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2050 CAGTCCAAGTCTTTTTCCTAGGTTTTGGTCGCTAAAACCCATAGATTCCACCTAGAACTT 2109
Query 1993 AGTTTCTTTCCCAGGACGCAGCGGTTGttttttaaattttttGGCAGGTTCCTTCTAAAC 2052
|||||||||| |||||| | || ||||||||||||| |||||||||||||||||||||||
Sbjct 2110 AGTTTCTTTCTCAGGACACTGCAGTTGTTTTTTAAAATTTTTGGCAGGTTCCTTCTAAAC 2169
Query 2053 AAAGGAGTCTGCTTCTACAACCGTTAGTGTTCCTGTGAATCCTGTCACTGAGTTCTGGTA 2112
||||||| ||| ||||||||| ||||||||| |||||| ||||||||||||||||||||
Sbjct 2170 AAAGGAGCCTGTTTCTACAACTGTTAGTGTTTTTGTGAAGCCTGTCACTGAGTTCTGGTA 2229
Query 2113 ATCTAGTTTAGGGTTTAGTCTTGACCGTCTTTTTGGAGTTGTTGTTTCTCTATATTCAGT 2172
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 2230 ATCTAGTTTAGGGTTTAGTCTTGACCGTCTTTTTGGAGTTGTTGTCTCTCTATGTTCAGT 2289
Query 2173 CAAGTTCTTGTAGAAAGTCCTTTGTTCTTTGGTTTAGGTTCGTGATAGTGCCTTTTATCT 2232
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2290 AAAGTTCTTGTAG-AAGTCATTTGTTCTTTGGTTTAGGTTCGTGATAGTGCCTTTTATCT 2348
Query 2233 TCTTCCACTGTAGAGCTTTTGGCAATGGCGGTGTAACTTCTTAATCCGCCATTACGACTC 2292
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2349 TCTTCCACTGTAGAGCTTTTGGCAATGGCGGTGTAACTTCTTAATCCGCCATTACAACTC 2408
Query 2293 TTCGGAGtt-ttttttt-t-t---------ctgccaaaagctctgtttttttcccacttt 2340
||||||||| ||||||| | | ||||||||||||||||||||| ||||||||
Sbjct 2409 TTCGGAGTTGTTTTTTTGTGTGTTATGTATCTGCCAAAAGCTCTGTTTTTT-CCCACTTT 2467
Query 2341 tttgtttAAGGCACTATCTTGTATACTTCTGAATCATTGTAACTATGTACTCTATATTA 2399
||||||||||||||||||||||| ||| ||||||||||||||| |||||||| |||||
Sbjct 2468 TTTGTTTAAGGCACTATCTTGTA--CTTATGAATCATTGTAACTTTGTACTCTCTATTA 2524
Score = 1134 bits (614), Expect = 0.0
Identities = 754/820 (92%), Gaps = 15/820 (2%)
Strand=Plus/Plus
Query 1 ATTTCTTCTGTAAAAATCTTCTCTTTTTGCCCTAATCTTCTAGGGTTCTTC-TCTTTTTC 59
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 18 ATTTCTTCTGTAAAAATCTTCTCTTTTTGCCCTAATCTTCTAGGGTTCTTCTTC-TTTTC 76
Query 60 ATGAATCTTAGTCTTCAATCTCTAT-TATTCTTCGTCTTTGTTCTTCAAATCGTCTTCGA 118
|||||||||||||||| |||||| | | ||||||||||| ||||||||||| |||||||
Sbjct 77 ATGAATCTTAGTCTTCGATCTCT-TCAAATCTTCGTCTTTCTTCTTCAAATCTTCTTCGA 135
Query 119 ATTATGTCTGGAATCTTCAGATTTAGTGGTGATGAAGATTGTTTTCTTGGGGGATCATCG 178
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 136 ATTATGTCTGGAATCTTCAGATTTAGTGGTGATGAAGATTGTTTACTTGGGGG---ATCG 192
Query 179 ATGTATCTATCACCAGGGAGCTGTCCCGGCGTGTATTTCCCAGCGCGTAAGAGGTTACGT 238
||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct 193 ATGTATCTATCACCAGGGAGCTGTCCCGGTGTATATTACCCAGCGCGTAAGAGGTTACGT 252
Query 239 ATCGCTGCGCCGACGGTTTT-CAGCGGTTTCGAGGAGAAGCAAACATCGATCGATGTATT 297
| |||||| || | ||||| ||||||||| |||||||||||||| || |||||||||||
Sbjct 253 GTTGCTGCGACGTC-GTTTTACAGCGGTTTTGAGGAGAAGCAAACTTCAATCGATGTATT 311
Query 298 GCCAGATGAGTGCTTGTTTGAGATTCTCAGACGTTTACCTTCTGGAGAAGAGAGGAGTGC 357
||| || ||||| || ||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 312 GCCTGAAGAGTGTTTATTTGAGATTCTAAGACGTTTACCTTCTGGACAAGAGAGGAGTGC 371
Query 358 TTGCGCTTGTGTTTCCAAGCATTGGCTTAATCTTTTGAGTAGTATCAGTAGGAGTGAAGT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TTGCGCTTGTGTTTCCAAGCATTGGCTTAATCTTTTGAGTAGTATCAGTAGGAGTGAAGT 431
Query 418 GAATGAGTCA---GTTCAAGATGTTGAGG-G--TGAAGGGTTTTTGTCAAGAAGTTTAGA 471
|||||||||| ||||||||||| |||| | ||||||||||||||| || ||||| ||
Sbjct 432 GAATGAGTCATCAGTTCAAGATGTGGAGGAGGGTGAAGGGTTTTTGTCTAGGAGTTTGGA 491
Query 472 GGGTAAGAAGGCGACGGATTTGAGGTTGGCAGCGATTGCAGTTGGGACATCGAGTCGAGG 531
||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||
Sbjct 492 GGGGAAGAAGGCGACGGATTTGAGGTTGGCGGCGATTGCGGTTGGGACGTCGAGTCGTGG 551
Query 532 AGGGTTGGGGAAGCTTCAGATTCGTGGGAGTGGTTTTGATAGCAAAGTGACTGATGTTGG 591
|||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||
Sbjct 552 TGGGTTGGGGAAGCTTCAGATTCGTGGGAGTGGGTTTGAGAGTAAGGTGACTGATGTTGG 611
Query 592 TCTTGGGGCTGTTGCTCATGGTTGTCCATCTCTTAGGGTTCTTTCTCTATGGAACTTACC 651
|||||| |||||||||||||||||||||||||||||| || ||||| |||||||||| ||
Sbjct 612 TCTTGGTGCTGTTGCTCATGGTTGTCCATCTCTTAGGATTGTTTCTTTATGGAACTTGCC 671
Query 652 TGCTGTTAGTGATATGGGTTTGTCTGAGATCGCACGGTCATGCCCGATGATTGAAAAAGT 711
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 672 TGCTGTTAGTGATTTGGGTTTGTCTGAGATCGCACGGTCATGCCCGATGATTGAAAAACT 731
Query 712 TGACCTTTCTCGATGTCCAGGAATAACTGACAATGGTTTGGTTGCAATTGCTGAGAGCTG 771
||||||||| || ||||| ||||||||||||| ||| |||||||| |||||||||| |||
Sbjct 732 TGACCTTTCACGGTGTCCTGGAATAACTGACAGTGGATTGGTTGCTATTGCTGAGAACTG 791
Query 772 TGTGAATCTGAGTGATCTGACGATTGATTCGTGCTCTGGT 811
|||||||||||||||||||||||||||||| |||||||||
Sbjct 792 TGTGAATCTGAGTGATCTGACGATTGATTCTTGCTCTGGT 831
Score = 158 bits (85), Expect = 3e-37
Identities = 97/103 (94%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 812 ACGTTGTATCAATCTGAGATCTATCTCTATCAGGAGCTGCCCTCGCATTGGAGATCAAGG 871
||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 864 ACGTTGTGTCAATCTGAGATCTATCTCTATCAGGAGCTGCCCACGTATTGGTGATCAAGG 923
Query 872 TGTTGCTTTCCTCTTGGCCCAAGCTGGTTCTTACTTGACGAAA 914
|||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 924 TGTTGCCTTCCTCTTGGCTCAAGCTGGTTCTTACTTGACGAAA 966
> AT5G25340.1 | Symbols: | Ubiquitin-like superfamily protein
| chr5:8793018-8794784 FORWARD LENGTH=1326
Length=1326
Score = 442 bits (239), Expect = 8e-123
Identities = 276/294 (94%), Gaps = 2/294 (1%)
Strand=Plus/Minus
Query 1951 TAGGTTTTGGTCACTAAAACCCATAGATTCCACCTAGAACTTAGTTTCTTTCCCAGGACG 2010
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1326 TAGGTTTTGGTCGCTAAAACCCATAGATTCCACCTAGAACTTAGTTTCTTTCTCAGGACA 1267
Query 2011 CAGCGGTTGttttttaaattttttGGCAGGTTCCTTCTAAACAAAGGAGTCTGCTTCTAC 2070
| || ||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1266 CTGCAGTTGTTTTTTAAAATTTTTGGCAGGTTCCTTCTAAACAAAGGAGCCTGTTTCTAC 1207
Query 2071 AACCGTTAGTGTTCCTGTGAATCCTGTCACTGAGTTCTGGTAATCTAGTTTAGGGTTTAG 2130
||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1206 AACTGTTAGTGTTTTTGTGAAGCCTGTCACTGAGTTCTGGTAATCTAGTTTAGGGTTTAG 1147
Query 2131 TCTTGACCGTCTTTTTGGAGTTGTTGTTTCTCTATATTCAGTCAAGTTCTTGTAGAAAGT 2190
||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||
Sbjct 1146 TCTTGACCGTCTTTTTGGAGTTGTTGTCTCTCTATGTTCAGTAAAGTTCTTGTAGAA-GT 1088
Query 2191 CCTTTGTTCTTTGGTTTAGGTTCGTGATAGTGCCTTTTATCTTCTTCCA-CTGT 2243
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1087 CATTTGTTCTTTGGTTTAGGTTCGTGATAGTGCCTTTTATCTTCTTCCATCTGT 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121535519445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5