BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489387

Length=770
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25360.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   941    0.0  


> AT5G25360.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G32342.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:8799710-8802648 REVERSE LENGTH=960
Length=960

 Score =  941 bits (509),  Expect = 0.0
 Identities = 584/618 (94%), Gaps = 13/618 (2%)
 Strand=Plus/Plus

Query  155  TTG-AGATGCATCTCTGTGAAATTATTCCCTCTTGGATCTACCAGTTATTTGGTTGCATG  213
            ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  221  TTGTAGATGCATCTCCGTGAAATCATTCCCTCTTGGATCTACCAGTTATTTGGTTGCATG  280

Query  214  GGAGGTTGTTTTGGATGCTGCAATAAACCACCGCTTATAGTTGCAGTGGATGAGCCGTCT  273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  281  GGAGGTTGTTTTGGATGCTGCAATAAACCACCGCTTATAGTTGCAGTGGATGAGCCGTCT  340

Query  274  AAAGGGTTAAGGATTCAAGGTCGTTTAGTGAAGAAGCCAAGCGTATCAGACGACTTTTGG  333
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  341  AAAGGGTTAAGGATTCAAGGTCGTTTAGTGAAGAAGCCAAGCGTATCAGAGGACTTCTGG  400

Query  334  AGCACAAGCACTTGCGAGATGGATAACAGCACACTTCAGTCACAGAGAAGCATGTCTTCT  393
            ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct  401  AGCACAAGCACCTGCGAGATGGATAATAGTACACTTCAGTCACAGAGAAGCATGTCTTCT  460

Query  394  ATCAGCTTCACTAACAATACTTCTACTTCTGCAAGTACAAGTAACCCCACAGAATTTGTA  453
            || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  461  ATTAGCTTCACTAACAATACTTCTACTTCTGCAAGTACAAGCAACCCCACAGAATTTGTA  520

Query  454  AACCATGGATTGAACCTCTGGAACCAAACTAGGCAACAATGGCTTGCAAATGGAACTTCT  513
            ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  521  AACCACGGATTGAACCTCTGGAACCAAACTAGGCAACAGTGGCTTGCAAATGGAACTTCT  580

Query  514  CATAAAAAGGCCAAACTTCGAGAACCTACAATAAGCTGGAATGCAACATATGAGAGCTTG  573
            || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  581  CAAAAAAAGGCCAAAGTTCGAGAACCTACAATAAGCTGGAATGCAACATATGAGAGCTTG  640

Query  574  TTGGGTATGAACAAGCGGTTTTCTCGTCCAATACCTCTCCCTGAAATGGTCGATTTTCTG  633
            ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct  641  TTGGGTATGAACAAGCGGTTTTCTCGTCCAATACCACTCCCTGAAATGGTGGATTTTTTG  700

Query  634  GTGGATGTGTGGGAGCAAGAAGGCTTGTATGATTGATTTGCAACTCTTGAAACTTAATTT  693
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  701  GTGGATGTGTGGGAGCAAGAAGGCTTGTATGATTGATTTGCAACTCTTTAAACTTAATTT  760

Query  694  GGTTTCATCTTTTTTCTTTCTTTAATGTGTGTAATCAAAA-ATTTCCGGAACTTGGATTT  752
             ||||||||||||  |||| |  | ||||||||||||||| |     | |||||||||||
Sbjct  761  AGTTTCATCTTTT--CTTT-T--A-TGTGTGTAATCAAAAGAA----G-AACTTGGATTT  809

Query  753  TTAAACCTGGCTTCCTGA  770
            ||| || |||||||||||
Sbjct  810  TTAGACTTGGCTTCCTGA  827


 Score =  244 bits (132),  Expect = 7e-64
 Identities = 150/159 (94%), Gaps = 0/159 (0%)
 Strand=Plus/Plus

Query  1    ACACGCATAACTaaaggaagaagaagacgaagaaaaaaaaaacgaacaaagaagaagaag  60
            ||||||||||||||| |||||||||||  || ||||||||||||||||| |||||||| |
Sbjct  1    ACACGCATAACTAAACGAAGAAGAAGAAAAAAAAAAAAAAAACGAACAACGAAGAAGACG  60

Query  61   aagacgaagaaacaaagataaagGCTTTAGATTTAGCTGCAAGGGAGGTGGCGGAACAAA  120
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  61   AAGACGAAGAAACAAAGATAAAGGCTTTAGATTTAGCTGCAGGGGAGGTGGCGGAACAAA  120

Query  121  ACCCTAATCCCAATTTTCCTCGAATATGCCATTTTTGAG  159
            |||||||||| |||||||| |||||||||||||||||||
Sbjct  121  ACCCTAATCCTAATTTTCCCCGAATATGCCATTTTTGAG  159



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37424439515


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5