BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489392
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25380.1 | Symbols: CYCA2;1 | cyclin a2;1 | chr5:8815230-881... 1784 0.0
> AT5G25380.1 | Symbols: CYCA2;1 | cyclin a2;1 | chr5:8815230-8817566
FORWARD LENGTH=1314
Length=1314
Score = 1784 bits (966), Expect = 0.0
Identities = 1206/1320 (91%), Gaps = 24/1320 (2%)
Strand=Plus/Plus
Query 1 ATGTATAGAGTTTCTTCAAAGCACCCTAATGCCACGAAGGAAGCAATCTCTACTACGAAA 60
||| |||||| |||||| |||||| ||||||| | ||| ||||||||||||||| |||||
Sbjct 1 ATGCATAGAGCTTCTTCTAAGCACACTAATGCGAAGAAAGAAGCAATCTCTACTTCGAAA 60
Query 61 ATTCGAGATAATAATGTGAGAATCACTAGATCAAAAGCTAAAGCCTTAGGAGTGTC-AAT 119
||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| |||
Sbjct 61 ATTCGAGATAATAATGTGAGAGTCACTAGATCAAGAGCTAAGGCCTTAGGAGTGTCGAAT 120
Query 120 GTCTCCCTCAAAACCCGCTTTTAAACAGGAACCAAAGCGTGTTGCTAGACCGAGTAACAA 179
||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||| ||
Sbjct 121 -TCTCCATCAAAACCCGCTTTTAAACATGAAACGAAGCGTGTTGCTAGACCGAGTAATAA 179
Query 180 ACGAATGGCATCGGAT-GT-T-ACTGCCTATAAGCATAAGAGACGGGCGGTGCTCAAGGA 236
|||||||||||||||| | | || | | ||| || || ||||| ||||||||||||||
Sbjct 180 ACGAATGGCATCGGATAATATCACAGTTTGTAATCAGAAAAGACGAGCGGTGCTCAAGGA 239
Query 237 TGTGACTAACACTTTGGCAGAACG---------TGCAGAAGGCGATATTAAGGCTTGTAA 287
|||||||||||||||||||||| | | |||||||| || |||||||||| ||
Sbjct 240 TGTGACTAACACTTTGGCAGAAAGTATAATTTCTACAGAAGGCAATGTTAAGGCTTGCAA 299
Query 288 GC-ATGGTCAAAAAGAGACTAAGCAAATATCAGAAGATGGTTTGGTAGATGTGGATGCCG 346
|| | ||| ||||| |||||||||||| |||||||||||||||||||||||||| ||
Sbjct 300 GCGA-GGTGGTAAAGAAACTAAGCAAATAGAAGAAGATGGTTTGGTAGATGTGGATGGCG 358
Query 347 AAAAATCGAAATTAGCAGAAGATTTATCAAAGATTAGAATGGTTGAATCTTTAGATGCCT 406
||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 359 AAAAATCTAAACTAGCAGAAGATTTGTCAAAGATTAGAATGGTTGAATCTTTAGATGCAT 418
Query 407 CTGCTCCAAAGCAAAAAGAAGATGGATCGGATGTCGCGGATTGTCTTCAGATTGTAGATA 466
||||| |||||||||||||||| |||| |||||| | |||||| |||||||||||||||
Sbjct 419 CTGCTTCAAAGCAAAAAGAAGACAGATCTGATGTCACAGATTGTGTTCAGATTGTAGATA 478
Query 467 TAGATTCCA-ATGTCCAAGATCCCCAGTTTTGTAGCTTGTATGCTGCAAGTATATATGAT 525
|||||| || |||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 479 TAGATT-CAGGTGTCCAAGATCCTCAGTTTTGTAGCTTATATGCTGCAAGTATATATGAC 537
Query 526 AGGAGTCATGTTGCAGAGCTTGAACAAAGACCTTCAACTAGTTATATGGTGCAAGTGCAG 585
|| | | |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 538 AGCATTAATGTTGCAGAGCTTGAACAAAGACCTTCAACTAGCTATATGGTGCAAGTGCAG 597
Query 586 CGAGATATCGATCCAAAC-ATGCGCGGAATTCTGATTGATTGGCTTGTGGAGGTTTCTGA 644
|||||||||||||| ||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 598 CGAGATATCGATCC-AACGATGCGCGGAATTCTGATTGATTGGCTCGTGGAGGTCTCTGA 656
Query 645 AGAGTACAAGCTGACTTCAGATACACTTTACCTTACCGTGAATCTAATTGATCGATTCAT 704
|||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 657 AGAGTACAAGTTGGTTTCAGATACACTTTACCTTACCGTGAATCTAATTGATCGGTTCAT 716
Query 705 GTCTCATAATTACATTGAAAAGCAGAGGCTTCAGCTACTAGGTGTCACTTGTATGCTAAT 764
|||||||||||||||||||||||||| ||| |||||||| ||| ||||||| ||| ||||
Sbjct 717 GTCTCATAATTACATTGAAAAGCAGAAGCTCCAGCTACTTGGTATCACTTGCATGTTAAT 776
Query 765 AGCCTCAAAATACGAAGAGATTTGTGCACCGCGGTTGGAGGAGTTTTGCTTCATTACAGA 824
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 777 AGCCTCCAAATACGAAGAGATTAGTGCACCGCGGTTGGAGGAGTTTTGCTTCATTACAGA 836
Query 825 CAATACATACACAAGACTAGAAGTACTAAGTATGGAGATTCAAGTTTTAAACTTTCTACA 884
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||
Sbjct 837 CAATACATACACAAGACTAGAAGTACTAAGTATGGAGATTAAAGTTTTAAACTCTCTTCA 896
Query 885 TTTTCGGTTATCAGTTCCCACCACCAAAACGTTTCTCAGGCGGTTCATTCACGCAGCTCA 944
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 897 TTTTCGGTTATCAGTTCCCACCACCAAAACGTTTCTCAGGCGGTTCATTCGCGCCGCTCA 956
Query 945 AGCGTCTGATAAGGTTCCCCTTATTGAGATGGAGTTCTTAGCAAACTATTTCGCGGAACT 1004
|||||||||||||||||| || ||||| ||||||| |||||| |||||||||||||||||
Sbjct 957 AGCGTCTGATAAGGTTCCTCTCATTGAAATGGAGTACTTAGCCAACTATTTCGCGGAACT 1016
Query 1005 AACTCTCACAGAATATACTTTCCTAAGGTTCCTACCATCCCTAATTGCCGCTTCAGCGGT 1064
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1017 AACTCTCACAGAATATACTTTCCTAAGGTTCCTTCCATCCCTAATTGCCGCTTCAGCGGT 1076
Query 1065 TTTCTTAGCAAGATGGACACTCGACCAATCTAACCATCCTTGGAACCCAACTCTACAGCA 1124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1077 TTTCTTAGCAAGATGGACACTCGACCAATCTAACCATCCTTGGAACCAAACTCTACAACA 1136
Query 1125 CTATACCAGATATAAAACATCCGCTCTAAAAAACACGGTACTTGCAATGGAGGATTTGCA 1184
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1137 CTATACAAGATATGAAACATCCGCTCTAAAAAACACGGTACTTGCAATGGAGGAGTTGCA 1196
Query 1185 ACTCAACACCAGTGGAAGCACCCTTATCGCTATACGA-ACCAAATACAACCAACAAAAGT 1243
|||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||
Sbjct 1197 GCTCAACACCAGTGGAAGCACTCTTATCGCTATAC-ACACCAAATACAACCAACAAAAGT 1255
Query 1244 TTAAAAGAGTGGCAACACTAACATCTCCTGAACGTGTCA-CAACACTCTTCTCAAGATGA 1302
||||||||||||||||| ||||||||||||||||||| | || |||||||||||||||||
Sbjct 1256 TTAAAAGAGTGGCAACATTAACATCTCCTGAACGTGTGAACA-CACTCTTCTCAAGATGA 1314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5