BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489393
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25410.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1746 0.0
> AT5G25410.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:8831670-8833509 FORWARD LENGTH=1204
Length=1204
Score = 1746 bits (945), Expect = 0.0
Identities = 1113/1192 (93%), Gaps = 20/1192 (2%)
Strand=Plus/Plus
Query 1 AATGTCTACAGGAGTTAGGATTGCTCTTGTTATGAATCTCTTACCTTTTTT-GTTCTCAC 59
|||||||||| |||||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 22 AATGTCTACAAGAGTTAGGATTGCTCTTGTTATGAATGTCTT-CCTTTTTTGGTTCTCAC 80
Query 60 CAGCCCTAATTCGTTCGGATCCAAATATGGTACCTCTCAGAACCTTCAAGATACGTGAAA 119
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 81 CAGCCCTAATTCGTTCGGATCCAAATATGGTGCCTCTAAGAACCTTCAAGATACGTGAAA 140
Query 120 ATGTAACATATGACTGCATTAACATTTATAAGCAACCGGGACTTGAGCATCCCTTGCTCC 179
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 141 ATGTAACATATGACTGCATTAACATTTATAAGCAACCAGGACTTGATCATCCCTTGCTCA 200
Query 180 AAAATCACAAAATCCAGATGAAACCATCA-TTTGCAAGACATGAATTAAAGAATCAAACT 238
|||| || ||||| ||||||||||||||| ||| ||||||||||||||| |||||||||
Sbjct 201 AAAACCATAAAATTCAGATGAAACCATCAGTTT-CAAGACATGAATTAAGGAATCAAACA 259
Query 239 GACAACACTAAAACATATAAGAATAAAATGGGCTGTCCACATGGCACCGTTCCTATATTA 298
|||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct 260 GACAACACTAAAACATATAAGAATAAAATGGGATGTCCAGATGGAACCGTTCCTATATTA 319
Query 299 AGAAATTCAAAAGAATATATCACCAATGCACAACTTTTTGCCGAGAAGTA-TGTCTATCC 357
|||||||||||||||||||| ||||||||||||||||| ||||||||||| | || ||||
Sbjct 320 AGAAATTCAAAAGAATATATTACCAATGCACAACTTTTCGCCGAGAAGTATTTTC-ATCC 378
Query 358 GCTATCAGGCGATAGTCCTGGAACACATATTGCTGGAGTGAA-GTCACAAAATGGTCCAT 416
||||||| |||| ||||||||| ||||| |||||||||| || |||||||||||||||||
Sbjct 379 GCTATCAAGCGAAAGTCCTGGATCACATGTTGCTGGAGT-AAGGTCACAAAATGGTCCAT 437
Query 417 ATCACGGTGTAGAAGCTTCATTTAGTATACATAACA-TAAACATCGAAAGAGATCAAGCC 475
|||| |||||||| |||||||||||||||||||| | ||||||||||||||||||| |||
Sbjct 438 ATCATGGTGTAGATGCTTCATTTAGTATACATAA-ATTAAACATCGAAAGAGATCAGGCC 496
Query 476 TCATATGCTCAATTATATGTAGGCAGTGGTTTGAACAATAAGGTCAATTTTATCCAAGCA 535
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 497 TCATATGCTCAATTATATGTAGGCAGTGGTTTGAACCATCAGATCAATTTTATCCAAGCA 556
Query 536 GGTTGGATGATAAATCCAAGTCTATTTGGCGACGGAGGTGTTTGGTCATATGGATTTTGG 595
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 557 GGTTGGATGATAAATCCAAGTATATTTGGCGATGGAGGTGTTTGGTCATATGGATTTTGG 616
Query 596 AAGGGTGAAAATGGAAAAGGATGTTATAATACGGCATGTCCAGGGTTTGTTCAAGTATCA 655
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 AAGGGTGAAAATGGAAATGGATGTTATAATACGGCATGTCCAGGGTTTGTTCAAGTATCA 676
Query 656 CAGGAGGTTCCCATAGCCCAGCCCTTGGACCAGCCACACGAACATTTGTTGCATTACTCC 715
|||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 677 CAGGAGGTTCCCATAGCCCAGCCCTTGGACCAGCCAAAGGAAGATTTGTTGCATTACTCC 736
Query 716 ATCCACCAGGATAAACAAACAGGAAACTGGTGGATTACAAAACTGATA-CTAAATGCACC 774
||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 737 ATCCATCAGGATAAACAAACAGGAAACTGGTGGATTACAAAACTGATAGC-AAATGCACC 795
Query 775 GAACATAGATGTCGGATATTGGCCAAAAGAATTATTTAACCTAATAGGTACTGGTGCAAA 834
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 796 TAACATAGATGTCGGATATTGGCCAAAAGAATTATTTAACCTAATAGGTAATGGTGCAAA 855
Query 835 TATGGTTGGAGTTGGAGGTGCAGTTCAAGCTTCTCATCAAGGTTCAAGTCCTCCAATGGG 894
|||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 856 TATGGTGGGAGTTGGAGGTGCAGTTCAAGCTTCTCATCAAGGTCCAAGTCCTCCGATGGG 915
Query 895 TAATGGTAAATTTCCGACTGGAGACCGAAAGGAATCAGCAATGTTTGCAAATATTGAAGT 954
||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||
Sbjct 916 TAATGGTAAATTTCCGATTGGAGACCCAAAGGAATCAGCAATGTTTACAAATATTGAAGT 975
Query 955 CTTGAATTCCAACTATGAACAATGTAGAATCGATTCTTTTCCTATGGAGAAGTTGCTAGA 1014
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 976 CTTGAATTCCAACTATGAACAACGTCGAATCGATTCTTTTCCTATGGAGAAGTTGCTAGA 1035
Query 1015 TAGTCCAAAATGTTATGGCATAAGA-ACCGATAAAGTAAAACTACTCGACTTTACTTTTA 1073
||| || ||||||||||| |||| | ||||||||| |||||||||||| ||| ||||||
Sbjct 1036 TAGCCCCAAATGTTATGGAATAA-ATACCGATAAAATAAAACTACTCGGTTTTGCTTTTA 1094
Query 1074 ATTATGGTGGTCCAGGAGGA-AATTCTTGCGGAGTTTGACATTTGCCAATGTAGA-CTTT 1131
||||||||||| | |||||| |||| ||| ||||||||||||||||||||||| | ||||
Sbjct 1095 ATTATGGTGGTGCGGGAGGAGAATT-TTGTGGAGTTTGACATTTGCCAATGTA-ATCTTT 1152
Query 1132 TAAAAATGGCT-TTTAATAAACTTATTTTAAATTAATAAATATGAAATTGTT 1182
| ||| | || ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1153 TTAAA-TCGCCATTTAATAAACTTATTCTAAATTAATAAATATGAAATTGTT 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5