BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489405
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25475.4 | Symbols: | AP2/B3-like transcriptional factor fa... 1053 0.0
> AT5G25475.4 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr5:8867797-8869821 REVERSE LENGTH=1234
Length=1234
Score = 1053 bits (570), Expect = 0.0
Identities = 705/769 (92%), Gaps = 14/769 (2%)
Strand=Plus/Plus
Query 188 GAGGATTATTCCAGAAGAGTTTGTGAGAAGCACGCCTGGGGCTTTTGAGCACAGAGTGGT 247
|||||| ||||| ||||| ||||||||||| |||| ||| ||||||||||||||||||||
Sbjct 364 GAGGATAATTCCGGAAGACTTTGTGAGAAGAACGCGTGGTGCTTTTGAGCACAGAGTGGT 423
Query 248 CTTTAGTGTTCGTTGGGAAAATTCCTGGCAACTCTGGCTGGAGCGAGAGAAGAACGAGCT 307
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 424 GTTTAGTGTTCGTTGGGAAAACTCCTGGCAACTCTGGCTGGAGCGAGAGAAGAACGAGCT 483
Query 308 GTTTATGATAGAAGAGGATTGGAATGAGTTTGTAGATGACAATCACTTAGGTCCAAATGA 367
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 484 GTTTATGATAGAAGAAGATTGGAATGAGTTTGTAGACGACAATCATTTAGGTCCAAATGA 543
Query 368 TAATCTGTTCTTCAGGCACGATGAGACGATGAATCTTGAAGTGCAAATCTTTAAGAATAA 427
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TAATCTGTTCATCAAACACGATGAGACGATGAATCTTGAAGTGCAAATCTTTAAGAATAA 603
Query 428 TGGGGACGAGATCATCGATGTACCTCTTGAAGTTGAACCCGAAACTGAACCATTTCATCC 487
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 604 TGGGGTTGAGATCATTGATGTACCTCTTGGAGTTGAACCCGAAACTGAACCATTTCATCC 663
Query 488 TACGCCCAAGAAACCTCACAGGGAGACAACCCCTGCCTCTGCCTCTG--TCT---T-TGG 541
|||||||||||||||||||| ||||||||||||||||||| ||| || ||| | |||
Sbjct 664 TACGCCCAAGAAACCTCACAAGGAGACAACCCCTGCCTCTTCCTTTGCCTCTGGCTCTGG 723
Query 542 CGGCTCTGCAAATGGAGGAACAAATAGCCGAGGAAGACAGCGTTCTAATGATGTCAAAAA 601
| |||||||||||||||| |||||| ||||||||| ||| ||||||| ||||||||||||
Sbjct 724 CTGCTCTGCAAATGGAGGGACAAATGGCCGAGGAAAACAACGTTCTAGTGATGTCAAAAA 783
Query 602 CCCTGAGCGATACCTCTTGAATCCCGAAAACCCTTACTTTGTGCAAGCGGTGACAAAAAG 661
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 784 CCCTGAGCGATACCTCTTGAATCCTGAAAACCCTTACTTTGTGCAAGCGGTGACAAAAAG 843
Query 662 GAATGACGTTCTGTATGTAAGCCGACCGGTAGTTCAGATG-TATAACTTGAAGTTTGGTC 720
||| |||||||||||||| ||||||||||| ||||||| | ||| ||||||||||||||
Sbjct 844 GAACGACGTTCTGTATGTGAGCCGACCGGTGGTTCAGA-GCTATCGCTTGAAGTTTGGTC 902
Query 721 CGGTTAAGTCCACCATTACCTACCTTCTTCCCGGGG-GaaaaaaaGAGGAAGGTGA-AAC 778
| |||||||||||||||||||| ||||||||||||| ||||||| |||||||| || ||
Sbjct 903 CCGTTAAGTCCACCATTACCTATCTTCTTCCCGGGGAGAAAAAA-GAGGAAGGCGAGAA- 960
Query 779 TAAGA-TCTACAACGGGCAACCTTGTTTCAGTGGATGGTCGGTTCTATGTCGAAGGCACA 837
|| || |||| |||||| |||||||||||||||| ||||||||||||||||| |||||||
Sbjct 961 TA-GAATCTATAACGGGAAACCTTGTTTCAGTGGCTGGTCGGTTCTATGTCGGAGGCACA 1019
Query 838 ATCTGAAAATCGGAGACTCGGTGGTTTGTGAACTTGAACGCTGTGGTGGTCTGGTTGCGG 897
||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||| | |
Sbjct 1020 ATCTGAATATCGGAGACTCCGTGGTTTGTGAACTTGAACGCTCCGGTGGTGTGGTTACCG 1079
Query 898 CTGTTAGAGTGCATTTCGTCAATAAAGACTAGACCATTCCTCTCTAGTA 946
|||| ||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1080 CTGTAAGAGTGCATTTCGTCAAGAAAGACTAGACCAATCCTCTCTAGTA 1128
Score = 222 bits (120), Expect = 4e-57
Identities = 155/172 (90%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 18 CTGTGACGGTGCGTGAACTTCACGCTCCGGTGATACCACCTAAGAACTGGTCCAGCTTTG 77
||| ||||| ||||||| |||||||||||| | ||| |||||||||||| ||||||||||
Sbjct 68 CTGCGACGGAGCGTGAAGTTCACGCTCCGGCGGTACTACCTAAGAACTGATCCAGCTTTG 127
Query 78 AAGAGAAAAATGTTGCCCAAGGGTGCTATTGATAAGATCCAAGCAAATGTGAGCAAGCCT 137
|| |||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||
Sbjct 128 AAAAGAAAAATGTTGCCTAAGAATGCTATTGAGAAGATCCAAGCAAATGTGAGCAAGCCT 187
Query 138 TGCTTCTGGAAGTCTCTCTCCCCAGGACAGAA-TTGGAAATCTAAGCCCATG 188
|||||||||||||||||||| |||||||| || |||||||||||| |||||
Sbjct 188 TGCTTCTGGAAGTCTCTCTCTCCAGGACA-AACTTGGAAATCTAAATCCATG 238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46265649387
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5