BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489406
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25480.1 | Symbols: DNMT2, AtDNMT2 | DNA methyltransferase-2... 1901 0.0
> AT5G25480.1 | Symbols: DNMT2, AtDNMT2 | DNA methyltransferase-2
| chr5:8869873-8872262 REVERSE LENGTH=1411
Length=1411
Score = 1901 bits (1029), Expect = 0.0
Identities = 1192/1272 (94%), Gaps = 5/1272 (0%)
Strand=Plus/Plus
Query 1 AAATTAATTTTGTTTaagcagaaaagaagaagaagaatccatggcggaagaagaattgca 60
|||||||||||| |||||||| || |||||||||| |||||||||| ||||||| ||
Sbjct 27 AAATTAATTTTGCTTAAGCAG--CAGCAGAAGAAGAA-GCATGGCGGAACAAGAATTACA 83
Query 61 gagaatcgatgagaagaagCCATGGCGAA-TTCTCGAGTTCTATAGTGGAATCGGTGGAA 119
||||||| |||||||||||||||||| || ||||||||||||| ||||||||||||||||
Sbjct 84 GAGAATCAATGAGAAGAAGCCATGGC-AAGTTCTCGAGTTCTACAGTGGAATCGGTGGAA 142
Query 120 TGAGATACTCTTTGATGGCGTCAGGCGTTGTTTCAGAAGTAGTAGAAGCTTTTGAGATTA 179
||||||||||||| |||||||||||| | || |||||||||||||||||||||||||| |
Sbjct 143 TGAGATACTCTTTAATGGCGTCAGGCATCGTCTCAGAAGTAGTAGAAGCTTTTGAGATCA 202
Query 180 ATGATTCTGCTAATGATGTTTATCAACATAATTTCAAACATCGTCCTTATCAGGGAAATA 239
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 203 ATGATTCTGCTAATGATGTTTATCAACATAATTTCAAACATCGTCCCTATCAGGGGAATA 262
Query 240 TTCAGAGTCTCACTGCTGTTGACTTAGATAAGTATAATGCAGATGCATGGCTTCTTTCTC 299
|||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 263 TTCAGAGTCTCACTGCTGCTGATTTAGATAAGTATAATGCAGATGCTTGGCTTCTTTCTC 322
Query 300 CTCCTTGTCAACCTTATACTCGACAAGGCCTTCAGAAACAGTCTGGTGATGCTCGGGCTT 359
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 323 CTCCTTGTCAACCTTATACTAGACAAGGCCTTCAGAAACACTCTGGTGATGCTCGGGCTT 382
Query 360 TTTCGTTTCTCAGGATTCTCGAGCTTATACCGCATACGTCTAAGCCTCCACAGATGTTGT 419
||||||||||||||||||| ||||||||||||||||| | ||||||||||| ||||| |
Sbjct 383 TTTCGTTTCTCAGGATTCTTGAGCTTATACCGCATACAACAAAGCCTCCACAAATGTTAT 442
Query 420 TTGTAGAGAACGTTGTTGGGTTTGAGACTTCAGATACTCATATGGAAATGATTGATACGT 479
|||||||||| |||||||| ||||||||||| ||||| |||||||||||||||| ||| |
Sbjct 443 TTGTAGAGAATGTTGTTGGATTTGAGACTTCGGATACACATATGGAAATGATTGGTACAT 502
Query 480 TAACAAAATTAGATTATGTCACACAAGAGTTTATTTTGAGTCCGTTGCAGTTTGGTGTGC 539
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 503 TAACAAAATTAGATTATGTCACACAAGAGTTTATATTGAGTCCGCTGCAGTTTGGTGTGC 562
Query 540 CGTATTCAAGACCACGTTATTTTTGCTTGGCCAAAAGAAAGCCTCTGCCATTTAAGTCCC 599
|||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||
Sbjct 563 CGTATTCAAGACCACGTTATTTCTGCCTGGCCAAAAGAAAACCTCTGCCATTTAAGTCCC 622
Query 600 AACACAGTAATAACAAACTACTCTGGTCTCCAGGCCCGTTATATGGGTGTGATGATCAGG 659
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 623 AACACAGTAATAACAAACTACTCTGGTCTCCAGACCCGTTATATGGGCGTGATGATCAGG 682
Query 660 TGGAGTTTGGAAAATGTCAAGCAGAAGAAGGATTGGATAAATTACTTCAGTTTTGCGAAC 719
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 683 TTGAGTTTGGAAAATGTCAAGCAGAAGAAGGATTGGATAAATTACTTGAGTTTTGCAAAC 742
Query 720 CAGTAGAGAAGTTTCTCGAGTCAGCTGCACATGTTGAAGGCGAGCCAAGTAGTGTTGATG 779
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 743 CAGTAGAGAAGTTTCTCGAGTTAGCTGCACATGTTGATGGCGAGCCAAGTAGTGTTGATG 802
Query 780 ACTCTGAGAATGGGTCCAAAGATTGCTATGGACAAGAAGACGATTCTGTGCCAGACTCTG 839
||||||| ||||||||||||||||| | ||||||||||| ||||||||| ||||||||||
Sbjct 803 ACTCTGAAAATGGGTCCAAAGATTGTTGTGGACAAGAAGGCGATTCTGTCCCAGACTCTG 862
Query 840 TTCATCAATATCTAGTACCAGTAAGTTTGATAGAGAGATGGGGAAACGCAATGGATATTG 899
| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 863 TACATCAGTATCTAGTACCAGTTAGTTTGATAGAGAGATGGGGAAACGCAATGGACATTG 922
Query 900 TTTACCCTGATTCAAAGAGATGTTGTTGTTTCACAAAGAGTTATTATCGATACGTGAAGG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 TTTACCCTGATTCAAAGAGATGTTGTTGTTTCACAAAGAGTTATTATCGATACGTGAAGG 982
Query 960 GCACTGGTTCCCTATTGGCAACTGTTCAGCCAAAAATCAAGGGTAAGGAATCTTGTTTGA 1019
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 983 GCACAGGTTCCCTATTGGCAACTGTCCAGCCAAAAATCAAGGGTAAGGAATCTTGTTTGA 1042
Query 1020 AGGAGCAGCGGCTTAGATACTTCACCCCAAGAGAGGTAGCTAACTTTCACTCATTCCCTG 1079
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1043 AGGAGCAACGGCTTAGATACTTCACCCCTAGAGAGGTAGCTAACTTTCACTCATTCCCTG 1102
Query 1080 AAGATTTTGAGTTCCCAAAGCACATAAGCCTTCGACAGAGATATGCAATGCTTGGAAACA 1139
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1103 AAGATTTTGAGTTCCCCAAGCACATAAGCCTTCGACAAAGATACGCAATGCTTGGAAACA 1162
Query 1140 GTTTAAGTGTAGCAGTCGTGGCTCCTCTGCTTCGGTATCTATTCGATTCTTGACTGCAAA 1199
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 1163 GTTTAAGTGTAGCAGTGGTGGCTCCTCTGCTTCGGTATCTATTCGATTCTTGACTACACA 1222
Query 1200 ACTGGAAGCAGTAAGTGACGCTACCAATTACCTGAACCAGCTATTCGCCCGAACAAGCTT 1259
| | || ||| |||||||||| |||||||||| ||| ||| ||||| || ||||||||||
Sbjct 1223 ATTTGATGCACTAAGTGACGCGACCAATTACCGGAATCAGTTATTCTCCTGAACAAGCTT 1282
Query 1260 CTCCTACGTTTT 1271
|| |||| ||||
Sbjct 1283 CTACTACTTTTT 1294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62499678525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5