BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489407

Length=731
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25490.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfam...   773    0.0  


> AT5G25490.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfamily 
protein | chr5:8876486-8877815 FORWARD LENGTH=861
Length=861

 Score =  773 bits (418),  Expect = 0.0
 Identities = 490/524 (94%), Gaps = 8/524 (2%)
 Strand=Plus/Plus

Query  1    AGAAGAAGATGAATAGGCCGGGAGATTGGAACTGCAGATCGTGTAGCCACCTCAACTTCC  60
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  50   AGAAGAAGATGAATAGGCCGGGAGATTGGAACTGCAGATTGTGTAGCCACCTCAACTTCC  109

Query  61   AAAGGAGGGATTCATGCCAACGTTGTAGAGAGCCTAGACCGGGCGGCATCAGTACTGACT  120
            | |||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct  110  AGAGGAGGGATTCATGCCAACGTTGTAGAGAGCCTAGACCGGGCGGGATCAGTACCGATT  169

Query  121  TACTCGGCGGTTTTGGTGGCCGTCCGGTTAGTAGCTCCATCGGTTTCAACACCGGGCCCG  180
            ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  170  TACTCAGCGGTTTTGGTGGCCGTCCGGTTAGTAGCTCCTTCGGTTTCAACACCGGGCCCG  229

Query  181  ACGTGAGACCCGGTGATTGGTATTGCAACCTT-GGGAGTTGCGGGGCACATAATTTTGCC  239
            | ||| ||||||| |||||||||||||||||| |||| ||| ||| ||||||||||||||
Sbjct  230  ATGTGCGACCCGGGGATTGGTATTGCAACCTTGGGGA-TTGTGGGACACATAATTTTGCC  288

Query  240  AATAGGTCCAGTTGTTTCAAGTGTGGTGCCGCCAAAGATGAGTTTTCAAGTTCAAGTGCT  299
            |||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct  289  AATAGGTCCAGTTGTTTCAAGTGTGGTGCCGCAAAAGATGAGTTTTCATGCTCAAGTGCT  348

Query  300  GCTGCAACAACCGGGTTTATAGACATGAATGTTGGTCCAAGACGTGGCCTTTTTGGTTTT  359
            |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  349  GCTGCAACAACCGGGTTTATGGACATGAATGTTGGTCCGAGACGTGGCCTTTTTGGTTTT  408

Query  360  ---GGCAGCAGCAGTGGTGGCAGCGGCACAGGCCGTTCTCCTTGGAAATCTGGAGATTGG  416
               |||||||| ||||||||  | || || ||||||||||||||||||||||||||||||
Sbjct  409  GGCGGCAGCAGTAGTGGTGGTGGTGGTACGGGCCGTTCTCCTTGGAAATCTGGAGATTGG  468

Query  417  ATTTGCCCAAGGTCAGGCTGCAACGAACATAACTTCGCAAGCAGGTCAGAGTGTTTCAGG  476
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  469  ATTTGCCCAAGGTCAGGCTGTAACGAACATAACTTCGCAAGCAGGTCAGAGTGTTTCAGG  528

Query  477  TGTAACGCACCAAA--ACCT-GCCACTGAACCACCCTATTAGTC  517
            ||||||||||||||  | || ||||| |||||||||||||||||
Sbjct  529  TGTAACGCACCAAAGGAACTTGCCACCGAACCACCCTATTAGTC  572



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35465307782


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5