BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489409
Length=1987
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25510.1 | Symbols: | Protein phosphatase 2A regulatory B s... 2964 0.0
AT5G25500.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 124 3e-27
> AT5G25510.1 | Symbols: | Protein phosphatase 2A regulatory B
subunit family protein | chr5:8882468-8884834 REVERSE LENGTH=2153
Length=2153
Score = 2964 bits (1605), Expect = 0.0
Identities = 1850/1964 (94%), Gaps = 34/1964 (2%)
Strand=Plus/Plus
Query 45 ttttttttttctctctctctctatctctAGGAATGTTTTTGTTCGTGGAAACTGGAATCA 104
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 203 TTTTTTTTTTCTCTCTCTCTCTCTCTCTAGGAATGTTTTTGTTCGTGGATACTGGAATCA 262
Query 105 TGAGATTAAGATTTTGAAGGAGAAAGCAGGATCCATGTTC-TTGTCAGAGAATTTAGGGC 163
||||| |||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 263 TGAGAATAAGATTTTGAAGGAGAAAGCAAGATCCATGTTCTTTGTCGGAGAATTTAGGGC 322
Query 164 T-CT-T-T-G-TTTG-G---ATTTGA---GCTTTTTGTGAAAGTTTTGAAA--TTTGGGA 209
| | | | | |||| | ||||| | |||||||||||||||||| |||||||
Sbjct 323 TAATATGTGGATTTGAGCTTCTTTGATTCCCAATTTGTGAAAGTTTTGAAATTTTTGGGA 382
Query 210 AA-AGA-TATGTTTAAGCAGTTTCTAAGTAAACTTCCGAGGAAGTCTTCAAAATCTGATT 267
|| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 383 AAGAGAGAATGTTTAAGCAGTTTCTGAGTAAACTTCCGAGGAAGTCTTCAAAATCTGATT 442
Query 268 CTGGAGAGCTGAATCGTTCGAGTTCAGGTCCGGTATCGTCTCCGGTTCAGAGATCCGGTA 327
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 443 CAGGAGAGCTGAATCGTTCGAGTTCGGGTCCGGTATCGTCTCCGGTTCAGAGATCCGGTA 502
Query 328 CTA---GTGCAGGTTCGGGTCCGGTTCGATCTAACTCAGGGAAGCGTATGTCATCTGCTG 384
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 CTAGTGGTGGTGGTTCGGGTCCGGTTCGATCTAACTCAGGGAAGCGTATGTCATCTGCTG 562
Query 385 TGTTCCCAGCTAGTGTTGTTGCTGGGATTGAGCCTTTGGTACCGTTTAAGGATGTACCAA 444
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 563 TGTTCCCAGCTAGTGTTGTTGCTGGTATTGAGCCTTTGGTACCGTTTAAGGATGTACCAA 622
Query 445 GCTCTGAGAAATTGAATCTCTTTGTGAGTAAAGTTAGTCTCTGTTGTGTGACGTTTGATT 504
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 623 GCTCTGAGAAGTTGAATCTCTTTGTGAGTAAAGTTAGTCTCTGTTGTGTGACATTTGATT 682
Query 505 TCTCCGACCCCGGTAAAAACTCGATTGAGAAAGATGTTAAAAGGCAGACATTGTTGGAGC 564
|||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 683 TCTCTGACCCTGGTAAAAACTCTATAGAGAAAGATGTTAAAAGGCAGACATTGTTGGAGC 742
Query 565 TTTTGGATTTTGTAGCTTCAGGGTCTGTTAAGTTTTCTGAGCCAGCTATTCTTGCAATGT 624
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 743 TTTTGGATTTTGTAGCTTCAGGGTCTGTTAAGTTCACTGAGCCAGCTATTCTTGCAATGT 802
Query 625 GTAGAATGTGTGCTGTTAATCTGTTTAGGGTCTTTCCTCCGAATTATCGGTCTAGTTCGG 684
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 803 GTAGAATGTGTGCTGTTAATCTCTTTAGGGTCTTTCCTCCGAATTATCGGTCTAGTTCTG 862
Query 685 GTGGTGAAAACGATGATGATGAGCCGATGTTTGACCCTGCTTGGCCTCATTTGCAAATTG 744
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 863 GTGGCGAAAACGATGATGATGAACCGATGTTTGACCCTGCTTGGCCTCATTTGCAGATTG 922
Query 745 TGTATGATTTGCTGCTTAAGTTTATTACTTCTCCGTGTCTTGATGCTAAATTGGCAAAGA 804
||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 923 TGTATGATTTGTTGCTTAAGTTTATCACTTCTCCGTGTCTTGATGCTAAAGTGGCAAAAA 982
Query 805 AGTATTTAGATCATGCTTTTATTGTGAGGTTGCTCGACTTGTTTGATTCGGAGGATCCTA 864
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 983 AGTATTTAGATCATGCTTTCATTGTGAGGTTGCTTGACTTGTTTGATTCGGAGGATCCTA 1042
Query 865 GAGAACGGGAGTGTTTGAAGACGATTCTGCATCGGGTGTATGGGAAATTCATGGTTCATA 924
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1043 GAGAACGGGAGTGTTTGAAGACGATTCTGCATCGGGTATATGGGAAGTTCATGGTTCATA 1102
Query 925 GGCCGTTTGTACGCAAGTCCATGAGTAATATATTCTACCGGTTTGTGTTTGAGACAGAGA 984
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1103 GGCCATTTGTACGCAAGTCCATGAGCAATATATTCTACCGGTTTGTGTTTGAGACAGAGA 1162
Query 985 AGCATAGCGGAATCGCAGAGCTTTTGGAGATTTTCGGGAGTATTGTGAGCGGATTTGCAT 1044
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 1163 AGCATAGCGGAATCGCTGAGCTTTTGGAGATTTTCGGGAGTATAGTGAGTGGATTTGCGT 1222
Query 1045 TGCCTTTGAAAGAGGAGCACAAGATCTTCTTGTGGAGAGTGTTGATTCCATTGCACAAGC 1104
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 TGCCTTTGAAAGAAGAGCATAAGATCTTCTTGTGGAGAGTGTTGATTCCATTGCACAAGC 1282
Query 1105 CTAAATCTGTTGGAAACTACTTCCAGCAGCTTTCTTATTGCATCACTCAGTTCATAGATA 1164
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1283 CTAAATCTGTTGGAAACTACTTTCAGCAGCTTTCTTATTGTATCACTCAGTTCATAGATA 1342
Query 1165 AAGAGCCGAAACTTGGCAGTGTTGTGATAAAGGGTTTGTTGAAGTTCTGGCCTATCACGA 1224
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 AAGAGCCGAAACTAGGCAGTGTTGTGATAAAGGGTTTGTTGAAGTTCTGGCCTATCACGA 1402
Query 1225 ACAGCCAGAAGGAAGTGATGTTTCTCGGGGAGGTCGAAGAGATTGTAGAAGCAATGAGCG 1284
| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1403 ATAGTCAGAAGGAAGTGATGTTTCTCGGGGAGGTCGAAGAAATTGTAGAAGCAATGAGTG 1462
Query 1285 TGATGGAATTTCAAAAGATCATGGTTCCTTTGTTCTTGCGGATTGCTTGTTGTGTCACCA 1344
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1463 TGATGGAGTTTCAAAAGATCATGGTCCCTTTGTTCTTGCGGATTGCTTGTTGTGTCACCA 1522
Query 1345 GTTCCCACTTTCAGGTTTCTGAAAGAGCTTTATTCTTGTGGAACAACGATCAAATTGTGA 1404
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1523 GTTCCCACTTTCAGGTTTCTGAAAGAGCTTTATTCTTGTGGAACAACGATCAAATTGTAA 1582
Query 1405 ACTTGATTGGACACAACCGGCAAGCCATCCTACCAATCATGTTCACTGCCTTAGAAAAGA 1464
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1583 ACTTGATTGGACATAACCGGCAAGCCATCCTACCAATCATGTTCACTGCTTTAGAAAAGA 1642
Query 1465 ATGCTCAGAACCACTGGAACCAATCTGTGCTAAACTTAACCTTAAACGTAAGAAAAATGT 1524
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1643 ATGCTCAGAACCACTGGAACCAATCCGTGCTAAACTTAACCTTAAACGTACGAAAAATGT 1702
Query 1525 TCTGTGAAATGGACGAGGCTCTGTTCATGTCTTGCCACGCCCGCTTTAAAGAGGACGAAG 1584
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1703 TCTGCGAAATGGACGAGGCTCTGTTCATGTCTTGCCACGCCCGCTTTAAGGAGGACGAAG 1762
Query 1585 CAAAGCTATGTTCTGCAGCGGAAAAGAGGAAAGAAGTATGGGCAAGGCTAGAGAACGCAG 1644
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1763 CAAAGCAATGTTCTGCTGCGGAAAAGAGGAAAGAAGTATGGGCAAGGCTAGAGAATGCAG 1822
Query 1645 CAAGTATGAAGCCGATAACAGGAAAGACGGCTGTTCTGGTAACTCCTCGAGCAACCTCCA 1704
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1823 CAAGTATGAAGCCGATAACAGGAAAGACTGCTGTTCTGGTAACTCCTCGAGCAACCTCCA 1882
Query 1705 TTGCCTGCTAAATAGCGCTTAAACCAATTCACGGACAGTTTATCCAACGGAAATGAAGCA 1764
| ||||||||||||||| |||||||||||||| |||||||||||||| | | | |
Sbjct 1883 TCGCCTGCTAAATAGCGTTTAAACCAATTCACAGACAGTTTATCCAA---A---GCA--A 1934
Query 1765 GCAACATCAA-AAGGATGATGGAGTGGCTGTTGCTTAAGCTATGGTCTTCGGGAACTTTT 1823
||||||| | ||| |||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1935 -CAACATCGAGAAG-ATGATGGAGTGGCTGTTGCTTAAGCTATAGTCTT-GGGAACTTTT 1991
Query 1824 CATCGGGGTTGATCTTTGTAATATTATATAACTTTGATGTTGTTAGATGTGTGGGTTTTA 1883
||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1992 CATCGAGGTTGATCTCTGTAATATTATATAACTTTGATGTTGTTAGCTGTGTGGGTTTTA 2051
Query 1884 ATGCTAAATCTCTTGCTTCCCTTTAAAGCAATGAAACCATGCTGCATAtttttttATCAA 1943
||||||| ||| |||||| | ||||||||||||||||||||||||| |||||| |||||
Sbjct 2052 ATGCTAATTCTATTGCTTTCTTTTAAAGCAATGAAACCATGCTGCAGATTTTT--ATCAA 2109
Query 1944 ACTCTTTGTATCAATCAATTAAGTTTATATATCCTTTTTCTTTC 1987
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2110 ACTCTTTGTATCAATCAATTAAGTTTATATATCCTTTTTCTTTC 2153
> AT5G25500.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:8880863-8882542
FORWARD LENGTH=1680
Length=1680
Score = 124 bits (67), Expect = 3e-27
Identities = 74/77 (96%), Gaps = 2/77 (3%)
Strand=Plus/Minus
Query 1911 GCAATGAAACCATGCTGCATAtttttttATCAAACTCTTTGTATCAATCAATTAAGTTTA 1970
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1680 GCAATGAAACCATGCTGCAGA--TTTTTATCAAACTCTTTGTATCAATCAATTAAGTTTA 1623
Query 1971 TATATCCTTTTTCTTTC 1987
|||||||||||||||||
Sbjct 1622 TATATCCTTTTTCTTTC 1606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98443268745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5