BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489410
Length=3370
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25520.2 | Symbols: | SPOC domain / Transcription elongatio... 2990 0.0
AT5G11430.1 | Symbols: | SPOC domain / Transcription elongatio... 525 1e-147
AT2G25640.1 | Symbols: | SPOC domain / Transcription elongatio... 233 7e-60
> AT5G25520.2 | Symbols: | SPOC domain / Transcription elongation
factor S-II protein | chr5:8885088-8889620 FORWARD LENGTH=3334
Length=3334
Score = 2990 bits (1619), Expect = 0.0
Identities = 2008/2186 (92%), Gaps = 65/2186 (3%)
Strand=Plus/Plus
Query 1 TTTTAGGGTTTCCTCTTCCCTTCGCACATATCTTGCTCCGATTGATTTTCCAGTGAACTT 60
|||||||||||| |||||| |||||||||||||| |||||||||||||| ||||||| ||
Sbjct 76 TTTTAGGGTTTCTTCTTCCTTTCGCACATATCTT-CTCCGATTGATTTTGCAGTGAAATT 134
Query 61 GTAttttatttttgtt-tttCTCAGAGCTGTTGAAGTGAATGTTTGGATATCGCTGTTGT 119
|| | | |||||||| || |||||||||||||||||||||||||||||| ||||| ||
Sbjct 135 GT-GTATCTTTTTGTTGTTAATCAGAGCTGTTGAAGTGAATGTTTGGATATAGCTGTGGT 193
Query 120 GGTTTAGTATCATGTCCAGTAATATGGGAACAGAGCATATTGATCTGGAGAC------A- 172
||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 194 GGTTTCGTATCATGTCCAGTAATATGGGAACAGAGCTTATTGATCTGGAGACTGTGAAAG 253
Query 173 --GA-T---A--CTTTTGGAGAAACGAATCTGATAGAGATAGTAGGATCAAATGA----- 219
|| | | ||||||||||||||||| |||| ||| |||| |||||||||||
Sbjct 254 CGGATTCAGATGCTTTTGGAGAAACGAATTTGATGGAGTTAGTTGGATCAAATGATCCTC 313
Query 220 -------TCAGCATATCTCAGTTTCAGACATGGAACAAGAGCCTTTGGAAACATCTGTCT 272
||||||||||||||||||||| || || ||||||||| |||||| ||||||||
Sbjct 314 CTTCTCTTCAGCATATCTCAGTTTCAGAGATTGAGCAAGAGCCTATGGAAATATCTGTCT 373
Query 273 CTGGTCCTTTGGCATTCCGATTTGAACCTGAGGATGTCTCTTTTCAATCCTCTATGTTGG 332
||||||||||| |||||| |||||| || |||| ||||||||||||||| ||||||||||
Sbjct 374 CTGGTCCTTTGTCATTCCAATTTGAGCCAGAGGCTGTCTCTTTTCAATCATCTATGTTGG 433
Query 333 TTGATACCCAGTCTTTGATGCCTCAGTTGCAACTTCCTGTTGCACATTCGTATTCTGGAG 392
||||||| |||||||||||||||||||||||| | || | || ||||||| ||
Sbjct 434 TTGATACTCAGTCTTTGATGCCTCAGTTGCAA----C--TT-C-CA----TATTCTGTAG 481
Query 393 AGAGTTCTGTATCTGCATGTAGTATCCTTCCAGGGGCAGGGAAGCGTAATTCACCACCAG 452
|||| || ||| |||||||||||| | | ||| | |||||||||| || || |||||||
Sbjct 482 AGAGGTCAGTAGCTGCATGTAGTA-AC-T-CAGTGACAGGGAAGCGGAAATCGCCACCAG 538
Query 453 AGTCTCAGTCGACTCTCGGTGGTTCTGCTGCTTCCGAGAAGTTAGATGCACCAAATAGGC 512
|| || | |||||| ||||||||||| |||||||||||||||||||| | || | ||
Sbjct 539 AG--TC--T--ACTCTCAGTGGTTCTGCTACTTCCGAGAAGTTAGATGCATCTAACAAGC 592
Query 513 GAGTAGAGCCAGTGCATCACAGACCATGGCTAGAACAATTTTATTCAGAAAGTATTGAGC 572
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 593 GAGTAGAGCCAGTGCACCACAGACCATGGCTAGAACAATTTTATTCAGAATGTATTCAGC 652
Query 573 GGGGTCATATGCCGCCACCTGCTACTCTTTCTCCCAAGACGGAACATCCACCAACGTCTG 632
||||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||| |||
Sbjct 653 GGGGTCATATGCCACCACCTGCTACTCTTTCTACCAAGACAGAACATCTACCAACGCCTG 712
Query 633 CTAAGAGA-TCAAGGCAAATGGAACCTGCTTCCCAAAAATCTGGGAAGCAAGTGATGAAC 691
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CTAAGAAAGT-AAGGCAAATGGAACCTGCTTCCCAAAAATCTGGGAAGCAAGTGATGAAC 771
Query 692 AAGAAACAATCAGGCCTGTCACAAGGGTCGGTGAAAACACAGAATGATGGTAACGAGTCT 751
||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 772 AAGAAACAAGCAGGCTTGTCACAAGGGTCGGTGAAAACACTGAATGATGGTAACGAGTCT 831
Query 752 TTAAGATCTAAAATGAAGGAATCATTAGCAGCTGCCTTGGCTTTGGTTCACGAGCATGAG 811
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TTGAGGTCTAAAATGAAGGAATCATTAGCAGCTGCCTTGGCTTTGGTTCACGAGCATGAG 891
Query 812 GAATCTCCGAAAGAGAAAAAGAATTCAGAAACTGAAGAAGCAAGTGTTCCAGTAGCTGAA 871
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GAGTCTCCGAAAGAGAAAAAGAATTCAGAAACTGAAGAAGCAAGTGTTCCAGTAGCTGAT 951
Query 872 AGTAATGAGCCTGCCTCAGCC-GATGGTACTAGTGTTACAGTAGCTGAAGACATCACACC 930
|||||||||||||| |||||| | |||||| ||||||||||||| |||||||||||| ||
Sbjct 952 AGTAATGAGCCTGCGTCAGCCTG-TGGTACCAGTGTTACAGTAGGTGAAGACATCACGCC 1010
Query 931 GGCATTGTCAACAAGGGATGATAGTTTTGGGCAGAAGAATGGCAATGGAAGAATTTTGTC 990
||| |||| ||||||||||| ||||||| ||||||||| ||||||||||||| ||||||
Sbjct 1011 AGCAATGTCCACAAGGGATGAAAGTTTTGAGCAGAAGAACGGCAATGGAAGAACTTTGTC 1070
Query 991 GCAAGAGAGTTCCAATGACACAAAGATGAATTATGTTAATCAATCTGATGTACAGAAAAC 1050
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GCAAGAGAGTTCCAAGGACACCAAGATGAATTATGTTAATCAATCTGATGTACAGAAAAC 1130
Query 1051 TCAATTTGACGAGGTTTTCCCCTGTGATGATGTTCGTTTTAGTGATAGTATTTTTTCTGG 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1131 TCAATTTGACGAGGTTTTCCCCTGTGATGATGTTCGTTTTAGTGATAGTATTTTTACTGG 1190
Query 1111 GGATGAACTTTTACAGGGTAATGGCCTCTCATGGGTTTTGGAACCTGTTTCAGATTTTGG 1170
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CGATGAACTTTTACAGGGTAATGGCCTCTCATGGGTTTTGGAACCTGTTTCAGATTTTGG 1250
Query 1171 GGAGAATGAACCTCAAAAGTCGTTTGAGGATCCAGAGCTCTTGGCATCTAAAATTGAGTT 1230
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GGAGAATGAAACTCAAAAGTCGTTTGAGGATCCAGAGCTCTTGGCATCTAAAATTGAGTT 1310
Query 1231 GGAACTTTTTAAGCTATTTGGAGGTGTGAACAAGAAGTACAAAGAGAAGGGAAGGTCTCT 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GGAACTTTTTAAGCTATTTGGAGGTGTGAACAAGAAGTACAAAGAGAAGGGAAGGTCTCT 1370
Query 1291 CTTATTCAATTTGAAGGATAAGAACAATCCTGAGCTAAGAGAAAGTGTCATGTCCGGAAA 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 CTTATTCAATTTGAAGGATAAGAACAATCCTGAGCTAAGAGAAAGTGTCATGTCCGGAAA 1430
Query 1351 GATATCTCCAGAGAGATTGTGTAATATGACAGCTGAGGAACTTGCTTCTAAGGAGCTTTC 1410
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 GATATCTCCAGAGAGATTATGTAATATGACAGCTGAGGAACTTGCTTCTAAGGAGCTTTC 1490
Query 1411 TCAGTGGCGACAAGCAAAAGCAGAAGAGATGGCGGAGATGGTTGTCCTGCGGGATGCAGA 1470
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1491 TCAGTGGCGACAAGCAAAAGCAGAAGAGATGGCGGAGATGGTTGTCCTACGGGACACAGA 1550
Query 1471 CATTGATGTCAGAAATCTGGTGAGGAAAACGCATAAAGGTGAGTTCCAGGTAGAAATTGA 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 CATTGATGTCAGAAATCTGGTGAGGAAAACGCATAAAGGTGAGTTCCAGGTAGAAATTGA 1610
Query 1531 TCCTGTTGATAGTGGGACAGTGGATGTGTCTGCTGAGATTACCTCACATAGTAAACCTCG 1590
||| ||||| ||||||||||||||||| |||||||||||||| ||| |||||||||||||
Sbjct 1611 TCCCGTTGACAGTGGGACAGTGGATGTCTCTGCTGAGATTACATCAAATAGTAAACCTCG 1670
Query 1591 AGCCAAAGCAAAATCCGCAAAATCATCTACCAAATCCACTTTAAAGAAAAATGGCTCGAA 1650
|||||||||||||||| | ||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 1671 AGCCAAAGCAAAATCCTCGAAATCATCTACCAAAGCCACTTTAAAGAAAAATGACTCTAA 1730
Query 1651 TGATAAGAACATAAAACTC-AACCAGGGAACATCATCTGCTATGACTCTGCCCCCAACAG 1709
|||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1731 TGATAAGAACATAAAA-TCCAACCAGGGAACATCATCTGCTGTGACTCTGCCCCCAACAG 1789
Query 1710 AGGAGATTGATCCAATGCATGGTCTGTCAATGGATGATGAGATGAAGGATGTGGGTTTTC 1769
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1790 AGGAGATTGATCCGATGCAAGGTCTGTCAATGGATGATGAGATGAAGGATGTGGGATTTC 1849
Query 1770 TTCCTCCAATTGTATCGCTTGATGAGTTCATGGAATCCCTGAACTCAGAACCTCCATTTG 1829
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 TTCCTCCAATTGTATCCCTTGATGAGTTCATGGAATCCCTGAACTCAGAACCTCCATTTG 1909
Query 1830 GCAGTCCACATGAGCATCCTCCTGTAAAGGAAGAGCCTGCATCTGAGAAGAGTGACTCTA 1889
||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1910 GCAGTCCACATGAACATCCTCCTGGAAAGGAAGATCCTGCATCTGAGAAGAGTGACTCTA 1969
Query 1890 AAGATGGGTCACATTCAAAATCACCTTCAAGATCTCCAAAACAGTCTCCAAAGGAACCCA 1949
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 1970 AAGATGGGTCACATTCAAAATCACCTTCAAGATCTCCTAAGCAGTCTCCAAAGGAACCGA 2029
Query 1950 GTGAGAGCGTCTCTTCTAAAACAGAACTC-AAAATGACTAATGTAACTTCCCCAAAAC-T 2007
||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |
Sbjct 2030 GTGAGAGCGTCTCTTCTAAAACAGAACTCGAAAA-GACTAATGTAATTTCCCCAAAACCT 2088
Query 2008 GGATGCTGGTGTCAAACTCGACACTGATGTCTCTAAACCTGAAGAAATAC-T-TTTGGTT 2065
| ||||||||| | |||||||| ||||||||| ||||||||| || ||| | |||||||
Sbjct 2089 G-ATGCTGGTGACCAACTCGACGGTGATGTCTCCAAACCTGAA-AA-TACATCTTTGGTT 2145
Query 2066 GATAACATTAAAGAGGACCGAATATGGGATGGTATACTGCAGCTTAGTGCCGCTTCCGTT 2125
|||| |||||||||||| |||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 2146 GATAGCATTAAAGAGGATCGAATATGGGATGGTATATTGCAGCTTAGTTCCGCTTCAGTT 2205
Query 2126 GTCTCAGTCACTGGAATTTTCAAGAG 2151
||||||||||||||||||||||||||
Sbjct 2206 GTCTCAGTCACTGGAATTTTCAAGAG 2231
Score = 1432 bits (775), Expect = 0.0
Identities = 1026/1141 (90%), Gaps = 42/1141 (4%)
Strand=Plus/Plus
Query 2233 TGGTGAGAAAGCAAAGACAGGCGAGTGGCCAACAATGGTGGAGGTAAAGGGTAGAGTGAG 2292
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2232 TGGTGAGAAAGCAAAGACAAGCGAGTGGCCAACAATGGTGGAGGTAAAGGGTAGAGTGAG 2291
Query 2293 ACTCAGCGCGTTTGGGAAGTTTGTAAAAGAGCTTCCGTTGTCTCGAAGCCGTGTCTTAAT 2352
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2292 ACTCAGTGCGTTTGGGAAGTTTGTAAAAGAGCTTCCGTTGTCTCGAAGCCGTGTCTTAAT 2351
Query 2353 GGTAATGAACGTGGTTTGCAAGGATGGTATCTCTCAGAGCCAACGTGATAGTCTTTTTGA 2412
|||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 2352 GGTAATGAACGTGGTTTGCAAGAATGGTATCTCTCAGAGCCAACGTGATAGCCTAATTGA 2411
Query 2413 GGTTACTAAGTCGTACGTAGCTGACCAAAGAGTTGGTTATGCAGAGCCAACGTCAGGCGT 2472
|||| ||||||| |||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 2412 GGTTGCTAAGTCATACGTAGCTGACCAAAGAGTTGGTTACGCAGAACCAACCTCGGGCGT 2471
Query 2473 TGAGCTTTACCTCTGTCCACCAC-GCGGTGAAATACTTG-AGTTGTTGAGCAAAATCATC 2530
||||||||||||||||||| ||| | ||||||| |||| | ||||||||||||||||||
Sbjct 2472 TGAGCTTTACCTCTGTCCAACACTG-GGTGAAAC-CTTGGATTTGTTGAGCAAAATCATC 2529
Query 2531 TCAAAGGACCATCTTGATGAGGTCAAGTGTTCAGAGGTTATCGGGTTGATCGGTGTTGTT 2590
|| ||||| ||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 2530 TCCAAGGATTATCTTGATGAGGTCAAGTGTTCAGAAGATATCGGGTTGATTGGTGTTGTT 2589
Query 2591 GTGTGGAGGCGTGCAGTTGTCGCGTCTCCTGGCTCACGACATAAGCCTGGATTCAAACGT 2650
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 2590 GTGTGGAGGCGTGCAGTTGTCGCGTCTCCTGGCTCACGCCATAAGCCGGGATTCAAACGT 2649
Query 2651 CAGCATTCTTCTTCTGGTGCTAAGAAGTCTGTGTTGGCTCCAGAAAACAAAAAGTCCAGT 2710
|||||||||||| | || |||||| |||||| ||||||||||||||| ||||||| ||
Sbjct 2650 CAGCATTCTTCTACAGGCACTAAGAGGTCTGTATTGGCTCCAGAAAACCAAAAGTCTAGA 2709
Query 2711 GGTGTGAATGTTACGAATCCGCCGCCTGTTGTAAATGTTGCATCCATGAGGAATCATGGT 2770
|||||| |||||||||||| | |||||||||||||| |||||||||||||||||||
Sbjct 2710 AGTGTGAGTGTTACGAATCCTTC---TGTTGTAAATGTTGAATCCATGAGGAATCATGGT 2766
Query 2771 TTGGTTGGTTTTGATAATGATGATGAAGACGTGCCACCTGGATTTGGTCCCGTAGCTGCG 2830
|||||||||| |||| |||||||||||||| |||| |||||||||||||| |||||||||
Sbjct 2767 TTGGTTGGTTGTGATGATGATGATGAAGACATGCCTCCTGGATTTGGTCCTGTAGCTGCG 2826
Query 2831 AAAGATGACGATGATTTGCCAGAATTTAACTTCAATTCCTCCAGTGGACCAGTTACTTCT 2890
||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 2827 AAAGATGACGATGATTTACCGGAATTTAACTTTAATTCCTCCAGTGGACCGGTTACTTCT 2886
Query 2891 TCTCCTCAACCACCGCCT-CAGTCTCGGTCTATGGAGCAAGTAAGGGAGCTCATTCTTAA 2949
||||||| ||||||| | ||||| |||||| |||| ||||||||||||||||| || ||
Sbjct 2887 TCTCCTCGACCACCGT-TGCAGTCCCGGTCTTTGGATCAAGTAAGGGAGCTCATACTCAA 2945
Query 2950 ATATGGAAATTCAGCAGGTAGTGGTAGTAAACGACCATGGGATGGTCATGAGGATGATGA 3009
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2946 GTATGGAAATTCAACAGGTAGTGGTAGTAAACGACCATGGGATGGTCATGATGATGATGA 3005
Query 3010 CGACGATGACATTCCTGAATGGCAACCGCAAGTCACAGGCCACCAAGTTCAACTGCCACC 3069
||||| |||||||||||||||||||||||| | | ||||||
Sbjct 3006 TGACGACGACATTCCTGAATGGCAACCGCAA--C-------------T------GCCACC 3044
Query 3070 ACCACCTCCTGACTTGAGTCCTCAATTTCATAGCAGAACCATGGCTAGACCACCAGCACA 3129
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 3045 ACCACCTCCTGACTTGAGTCCTCAATTTCATAGCGGAACCATGGCCAGACCACCAGCACA 3104
Query 3130 ACAACAACCTGTTGCGGGACCATCGAGTGGATGGAAGGCCTATCAAAACACACCTAGACA 3189
|| || | ||||||||||||| ||||||||||||||||| |||||||| ||||||| ||
Sbjct 3105 ACGAC--C-TGTTGCGGGACCACCGAGTGGATGGAAGGCCAATCAAAACGCACCTAGGCA 3161
Query 3190 ACAACAGTACAGTGCACGTAGAAACAGAGGATTTTGATCTTTGTGAATGCGTTTGTGTAA 3249
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 3162 ACAACAGTACAGTGCACGTAGGAACAGAGGATTTTGATCTTTGTGAATACGTTTGTGTAA 3221
Query 3250 TTAAAGTTTGTTAGGTGTATTGACTTCTCTATCATCAGCtttttttGTTTTGTAGTGTTT 3309
|||||||||||||||| ||||||| ||||||||||| |||||| |||||||
Sbjct 3222 TTAAAGTTTGTTAGGTCTATTGACGTCTCTATCATCGGCTTTTA---------AGTGTTT 3272
Query 3310 CAATAGAATTGTAAACCTTTGAATAATGGAGTCTTTTAAGCATAAAAGTTTGAATTCAAC 3369
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3273 CTATAGAATTGTAAACCTTTGAATAATGGAGTCTTTTAAGCATAAAAGTTTGAACTCAAC 3332
Query 3370 A 3370
|
Sbjct 3333 A 3333
> AT5G11430.1 | Symbols: | SPOC domain / Transcription elongation
factor S-II protein | chr5:3648054-3652404 FORWARD LENGTH=2882
Length=2882
Score = 525 bits (284), Expect = 1e-147
Identities = 730/934 (78%), Gaps = 75/934 (8%)
Strand=Plus/Plus
Query 1023 ATGTTAATC-AATCTGATGTACAGAAAACTCAATTTGACGAGGTTTTCCCCT-GTGATGA 1080
||||| ||| ||| | |||||| || | |||| |||||||||||| |||| | ||| |
Sbjct 702 ATGTT-ATCAAATTTAATGTACTTAAGTCCCAATATGACGAGGTTTT-CCCTCGGGATAA 759
Query 1081 TGTTCGTTTTAGTGATAGTATTTTTTCTGGGGATGAACTTTTACAGGGTAATGGCCTCTC 1140
||||| ||||| ||||| ||||||| | ||||| |||||||| ||||||| |||||
Sbjct 760 TGTTCCTTTTACTGATATTATTTTTCCAAACGATGATCTTTTACATGGTAATGAACTCTC 819
Query 1141 ATGGGTTTTGGAACCTGTTTCAGATTTTGG-G----G-A-GA--AT-GAACC-----TCA 1185
||||| | ||||| ||||||||| |||| | | | || || ||||| | |
Sbjct 820 ATGGGATCTGGAA---GTTTCAGATCTTGGCGAAACGAAGGATTATGGAACCGGTGGTGA 876
Query 1186 AAAGTCGTTTGAGGATCCAGAGCTCTTGGCATCTAAAATTGAGTTGGAACTTTTTAAGCT 1245
|||||| ||| |||||||| | || ||||||||||||||||| ||||||| | ||||||
Sbjct 877 AAAGTCATTTCAGGATCCAAAACTTTTGGCATCTAAAATTGAAATGGAACTGTATAAGCT 936
Query 1246 ATTTGGAGGTGTGAACAAGAAGTACAAAGAGAAGGGAAGGTCTCTCTTATTCAATTTGAA 1305
|||||| ||||||||||| ||||||| ||||| ||||||||| ||||||||||| |||||
Sbjct 937 ATTTGGTGGTGTGAACAAAAAGTACAGAGAGAGGGGAAGGTCCCTCTTATTCAACTTGAA 996
Query 1306 GGATAAGAACAATCCTGAGCTAAGAGAAAGTGTCATGTCCGGAA-AGATATCTCCAGAGA 1364
|||||||||||||||||||||||||||||| || ||||| |||| | || ||| | ||||
Sbjct 997 GGATAAGAACAATCCTGAGCTAAGAGAAAGAGTTATGTC-GGAAGAAATTTCTGCTGAGA 1055
Query 1365 GATTGTGTAATATGACAGCTGAGGAACTTG-CTTCTAAGGAGCTTTCTCAGTGGCGACAA 1423
| |||||| ||||||||| || ||| ||| ||||||||||||||||||||||||| |||
Sbjct 1056 GGTTGTGTTCTATGACAGCCGAAGAA-TTGGCTTCTAAGGAGCTTTCTCAGTGGCGTCAA 1114
Query 1424 GCAAAAGCAGAAGAGATGGCGGAGATGGTTGTCCTGCGGGATGCAGACATTGATGTCAGA 1483
|| ||||| ||||||||||| ||||||||||||||| |||| |||| ||||||||||||
Sbjct 1115 GCCAAAGCTGAAGAGATGGCAAAGATGGTTGTCCTGCAGGATACAGATATTGATGTCAGA 1174
Query 1484 AATCTGGTGAGGAAAACGCATAAAGGTGAGTTCCAGGTAGAAATTGATCCTGTTGATAGT 1543
| ||||||||||||||| || || ||||| |||||||| |||||||| || ||||| ||
Sbjct 1175 AGTCTGGTGAGGAAAACACACAAGGGTGAATTCCAGGTTGAAATTGAACCAGTTGACAG- 1233
Query 1544 GGG-ACAGTGGATGTGTCTGCTGAG-ATTACCTCACATAGTAAACCTCGAGCCAAAGCAA 1601
||| ||||| ||||| |||| || | || | |||| ||| |||| |||| ||| ||| |
Sbjct 1234 GGGCACAGTAGATGTCTCTGGTG-GCATCATGTCACGTAGCAAACGTCGACCCAGAGCCA 1292
Query 1602 AATCCGCAAAATCATCTACCAAATCCACTTT-AAAGAAAAATGGCTCGAATGATAAGAAC 1660
|||| || || | | | ||| || || | ||||| | ||| | | | ||| |
Sbjct 1293 AATCT-CAT--TC-TGT-CAAAA-CCGCTCTCAAAGATGA--GGCA-GCA--A-AAG--C 1338
Query 1661 ATAAAACTCAACCAGGGAACATCATCTGCT-ATGACTC-TGCCCCCAACAGAGGAGATTG 1718
| | | || || || |||| | ||| | |||| | ||| |||| || ||||| |
Sbjct 1339 -TGA--C--AATGAG--AA-ATCA-C-GCTCA--ACTCCT-CCCTCAACTGAAGAGATAG 1385
Query 1719 ATCCAATGCATGGTCTGTCAATGGATGATGAGAT-GAAGGATGTGG-GTTTTCTTCCTCC 1776
|||| ||||| ||| || || |||||||| || |||||| |||| |||| ||||||||
Sbjct 1386 ATCCCATGCAAGGTTTGGGGATCGATGATGA-ATTGAAGGACGTGGAGTTT-CTTCCTCC 1443
Query 1777 AATTGTATCGCTTGATGAGTTCATGGAATCCCT-GAACTCAGAACCTCCATTTGGCAGTC 1835
||||||||| |||||||| |||||||||||||| || ||| || |||||||||| ||||
Sbjct 1444 AATTGTATCACTTGATGAATTCATGGAATCCCTAGA-CTCTGAGCCTCCATTTGAAAGTC 1502
Query 1836 CACATGAGCA-TCCTCCTGTAAAGGAAGA-GCCTGCATCTGAGAAGAGTGACTCTAAAGA 1893
| |||| | | | || || ||| | || | || | |||||||| ||||| || |||
Sbjct 1503 CGCATG-GTAAT--TC-TG-AAATGCAGGTGTCTCCGTCTGAGAAAAGTGATTCCGAAGC 1557
Query 1894 TGGGTCACATTCAAAATCACCTTCAAG-ATCTCC 1926
||||||| | |||||||| ||| ||| ||||||
Sbjct 1558 TGGGTCAGACTCAAAATCTCCTA-AAGGATCTCC 1590
> AT2G25640.1 | Symbols: | SPOC domain / Transcription elongation
factor S-II protein | chr2:10910498-10913969 FORWARD LENGTH=2421
Length=2421
Score = 233 bits (126), Expect = 7e-60
Identities = 277/351 (79%), Gaps = 6/351 (2%)
Strand=Plus/Plus
Query 1198 GGATCCA-GAGCTCTTGGCATCTAAAATTGAGTTGGAACTTTTTAAGCTATTTGGAGGTG 1256
||||||| || | ||||||| | |||| ||| ||||| |||||| ||||||| ||||
Sbjct 1064 GGATCCACAAG-TTTTGGCATTTGAAATAGAGACAGAACTCTTTAAGTTATTTGGTGGTG 1122
Query 1257 TGAACAAGAAGTACAAAGAGAAGGGAAGGTCTCTCTTATTCAATTTGAAGGATAAGAACA 1316
| || ||||| || |||||||| |||||||||||||| ||||||||||| || |||| |
Sbjct 1123 TAAATAAGAAATATAAAGAGAAAGGAAGGTCTCTCTTGTTCAATTTGAAAGACAAGAGTA 1182
Query 1317 ATCCTGAGCTAAGAGAAAGTGTCATGTCCGGA-AAGATAT-CTCCAGAGAGATTGTGTAA 1374
||||| | || || |||| || |||| ||| || || | | ||||| ||||||||
Sbjct 1183 ATCCTAAACTCAGGGAAAAAGTTATGTATGGAGAA-AT-TGCAGCAGAGCGATTGTGTTC 1240
Query 1375 TATGACAGCTGAGGAACTTGCTTCTAAGGAGCTTTCTCAGTGGCGACAAGCAAAAGCAGA 1434
||| |||| |||||||||||||| ||||| || || ||||||||||||||||||||||
Sbjct 1241 CATGTCAGCAGAGGAACTTGCTTCAAAGGAACTAGCTGAGTGGCGACAAGCAAAAGCAGA 1300
Query 1435 AGAGATGGCGGAGATGGTTGTCCTGCGGGATGCAGACATTGATGTCAGAAATCTGGTGAG 1494
||||||||| |||||||||| |||| ||| | || | ||| |||||| || || ||
Sbjct 1301 AGAGATGGCTCAGATGGTTGTTCTGCAGGACACTGAGGTGGATATCAGAAGCCTAGTAAG 1360
Query 1495 GAAAACGCATAAAGGTGAGTTCCAGGTAGAAATTGATCCTGTTGATAGTGG 1545
|||||| || ||||| |||||||| || ||| |||| || | ||||||||
Sbjct 1361 GAAAACACACAAAGGAGAGTTCCAAGTGGAAGTTGAACCAATGGATAGTGG 1411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 167708090449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5