BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489414
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25560.2 | Symbols: | CHY-type/CTCHY-type/RING-type Zinc fi... 1810 0.0
> AT5G25560.2 | Symbols: | CHY-type/CTCHY-type/RING-type Zinc
finger protein | chr5:8897871-8901709 FORWARD LENGTH=1455
Length=1455
Score = 1810 bits (980), Expect = 0.0
Identities = 1197/1293 (93%), Gaps = 50/1293 (4%)
Strand=Plus/Plus
Query 4 ATTTTATTCGTCGTCAGTTTCAATCGGAGATTTCTTGGTTCGGAGCTCGCGAGAATTATC 63
||||||||||||||||||||| ||| || ||| |||||||| ||||||||||||
Sbjct 37 ATTTTATTCGTCGTCAGTTTC-ATC------TTGTTGCTTCGGAGCGAGCGAGAATTATC 89
Query 64 GCCGGAGAATTTA--G---C-GTCTCTGAAAATTCTGTTCGGTGAAGAATCGTCGGATCG 117
| ||||||||||| | | ||||||||||||||| ||||||||||||||||||||||
Sbjct 90 GTCGGAGAATTTATCGTCTCTCTCTCTGAAAATTCTGATCGGTGAAGAATCGTCGGATCG 149
Query 118 AAAGTTTCATAAGCTTTCCACCAGCTAGCAGTGTCTGCCAATATCACTGACAGATAATTC 177
|||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||
Sbjct 150 AAAGTTTCATAAGCTTTCCATCAACTAGCAGTATCTGCCAATATCACAGACAGATAATTC 209
Query 178 ATAATGGGAGACGTATATTTCAACCATTTCGCTGAGCAACCGCAGATGTTTGACCAAGAG 237
|||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||
Sbjct 210 GTAATGGGAGACGTATATTTCAACCATTTCGCTCAGCAACTGCAGATGTCTGACCAAGAG 269
Query 238 AAGGGTGAAATGTCAAGTA-ATTTGCACCCTCATTCAATCAATGAAGACTCTGAATCGTC 296
||||||||||||||||| | ||| ||||||||||||||||||||||| ||||| |||||
Sbjct 270 AAGGGTGAAATGTCAAG-ACATTCACACCCTCATTCAATCAATGAAGAATCTGAGTCGTC 328
Query 297 AACTCTGGAAAGGGTGA-CAGCAGAGTCATTAATAAACAAAGTCCTTGGTAGAGGACTAA 355
||||||||||||||| | ||||||||||||||| |||||||||||||| |||||||||||
Sbjct 329 AACTCTGGAAAGGGT-AGCAGCAGAGTCATTAACAAACAAAGTCCTTGATAGAGGACTAA 387
Query 356 TGGAGCACGGATGTCCACATTACAGAAGAAGGTGTTGCATTAGAGCTCCTTGCTGTAATG 415
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 TGGAGTATGGATGTCCACATTACAGAAGAAGGTGTTGCATTAGAGCTCCTTGCTGTAATG 447
Query 416 AGATCTTTGGTTGCCATCACTGTCATAATGAGGCGAAGAACAACATAAATGTAGATCAGA 475
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 448 AGATCTTTGGTTGCCATCACTGTCATTATGAGGCGAAGAACAACATAAATGTAGATCAGA 507
Query 476 AGCAGAGGCATGATATTCCTCGCCACCAAGTTGAACAGGTTATTTGTTTACTCTGTGGTA 535
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 508 AGCAGAGGCATGATATTCCTCGCCACCAAGTTGAACAGGTTATTTGTTTACTTTGTGGTA 567
Query 536 CTGAACAAGAGGTGGGCCAAATTTGTATCCATTGTGGAGTGTGCATGGGGAAGTACTTCT 595
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 568 CTGAACAAGAGGTGGGCCAAATTTGTATCCACTGTGGAGTGTGCATGGGGAAGTACTTCT 627
Query 596 GTAAAGTCTGCAAGCTCTACGATGATGATACGTCTAAAAAACAGTACCACTGCGATGGGT 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 GTAAAGTCTGCAAGCTCTACGATGATGATACGTCTAAAAAACAGTACCACTGCGATGGGT 687
Query 656 GTGGAATTTGCAGAATTGGAGGACGTGAAAATTTCTTTCACTGTTACAAGTGTGGCTGTT 715
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GTGGAATTTGCAGAATCGGAGGACGTGAAAATTTCTTTCACTGTTACAAGTGTGGCTGTT 747
Query 716 GTTATTCAATCCTCCTCAAGAACAGTCACCCTTGTGTTGAAGGAGCAATGCATCACGACT 775
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 748 GTTATTCAATCCTCCTCAAGAACGGTCACCCTTGTGTCGAAGGAGCAATGCATCACGACT 807
Query 776 GCCCCATTTGCTTTGAGTTCCTGTTTGAATCACGGAACGATGTGACGGTTTTGCCATGTG 835
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 808 GCCCCATTTGCTTTGAGTTTCTGTTTGAATCACGGAACGATGTGACGGTTTTACCATGTG 867
Query 836 GACACACAATCCATCAGAAGTGCTTGGAGGAAATGAGAGATCATTACCAATATGCGTGCC 895
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 GACACACAATTCATCAGAAGTGCTTGGAGGAAATGAGAGATCATTACCAATATGCGTGCC 927
Query 896 CACTTTGCTCAAAATCCGTATGCGACATGTCAAAGGTGTGGGAGAAATTTGACATGGAGA 955
|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 928 CACTTTGCTCAAAATCTGTATGCGACATGTCAAAAGTGTGGGAGAAGTTTGACATGGAGA 987
Query 956 TTGCGGCTACACCAATGCCAGAACCATACCAGAACAGAATGGTGCAGATTCTCTGCAACG 1015
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 988 TTGCGGCTACACCAATGCCAGAACCATACCAGAACAGAATGGT-CA-ATTCTCTGCAACG 1045
Query 1016 ACTGTGGGAAAAAATCGGAGGTAAAGTACCATGTGGTGGCTCAGAAATGCCCAAACTGCA 1075
|||||||||| ||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1046 ACTGTGGGAAGAAAGCAGAGGTACAGTACCATGTGGTGGCTCAGAAATGCCCAAACTGCA 1105
Query 1076 AATCATACAACACTCGCCAAACCCGAGGCTGAAGCTCTTTTTGAAGTTTG-TTTGCTATC 1134
||||||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||
Sbjct 1106 AATCATACAACACTCGCCAAACCAGAGGCTGAAGCTTTTTTTGAAGTT-GATTTGCTATC 1164
Query 1135 AGATGCAATTAAGAGCTTT-CACTTGAACGAATAGTGTCATTGG-TC-T---CT------ 1182
| ||||||||||||||||| ||||||| | |||||||||||||| || | ||
Sbjct 1165 AAATGCAATTAAGAGCTTTTCACTTGATCCAATAGTGTCATTGGATCCTTAACTTGAGGA 1224
Query 1183 C-G---------AGTCTATCTCTTC--ACTCAT-TTCTTCAATATTCTCTGGGTCGTCTC 1229
| | ||||||||||||| |||| | ||||||||||||||||| ||||||||
Sbjct 1225 CTGGGTCTCTCGAGTCTATCTCTTCTCACTC-TCTTCTTCAATATTCTCTGAGTCGTCTC 1283
Query 1230 TTGTTCACTAAGTCTAT--GTCTCCTTGGTGTT 1260
|||||||||| |||||| || |||||||||||
Sbjct 1284 TTGTTCACTA-GTCTATATGTTTCCTTGGTGTT 1315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61947472530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5