BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489417

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25570.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   350    1e-95


> AT5G25570.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 
plant structures; EXPRESSED DURING: 13 growth stages. | chr5:8901755-8903216 
FORWARD LENGTH=710
Length=710

 Score =  350 bits (189),  Expect = 1e-95
 Identities = 207/215 (96%), Gaps = 3/215 (1%)
 Strand=Plus/Plus

Query  110  GAAATGTCACAGCAAGTTCAGATGGGAATGGAGAATATGCTCAAGATGGTCAAGTATGAA  169
            |||||||||||||||||||||||||| |||||||||||||||||||||||    ||||||
Sbjct  267  GAAATGTCACAGCAAGTTCAGATGGGGATGGAGAATATGCTCAAGATGGT---TTATGAA  323

Query  170  ATCGATCAAAACTCTGTTGGAATCAAGGAAGAGATTGAGAAATCAAAGGATTTTGCTATG  229
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  324  ATCGATCAAAACTCGGTTGGAATCAAGGAAGAGATTGAGAAATCAAAGGATTTTGCTATG  383

Query  230  GAGAAGAAAAGGATTCTCGAGGAGGAGAAAGACCAGTTTCAGAAAGCTGCTTACACTATT  289
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  384  GAGAAGAAAAGGATCCTCGAGGAAGAGAAAGACCAGTTTCAGAAAGCTGCTTACACTATT  443

Query  290  CTAGACATGCTAAGCAACAGCCGAGGCTAAATCCA  324
            |||||||||||||||||||||||||||||||||||
Sbjct  444  CTAGACATGCTAAGCAACAGCCGAGGCTAAATCCA  478


 Score =  176 bits (95),  Expect = 2e-43
 Identities = 159/188 (85%), Gaps = 12/188 (6%)
 Strand=Plus/Plus

Query  384  TGATGCTCTTGGAGAAACTATATCAGGTAAAGGAAATATTATAAATGTCAATAAAGAATC  443
            |||||||| || ||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct  481  TGATGCTCATGAAGAAACTATATCAGGTAAAGGAAATATTAGAAATGTCAACAAAGACTC  540

Query  444  TCACTGGTTTGGTATTGTATCTACATACAATTTAAGGT---ATTAG-TTTCACATTGCTA  499
            ||||||||||||| ||| ||| ||||| | |  |||||   ||||| ||| |||||||||
Sbjct  541  TCACTGGTTTGGTTTTGGATCCACATATA-T--AAGGTCGTATTAGCTTT-ACATTGCTA  596

Query  500  TTATTGCAACTTTTATCACAATGTGTGAATTCAGAAAATCCAGTATAT-T-CGGATTGAA  557
            ||| || |||||||||||||| |||||||| ||| |  | |||||||| | || ||| ||
Sbjct  597  TTACTGAAACTTTTATCACAAAGTGTGAATCCAGTA--TGCAGTATATATTCGTATTCAA  654

Query  558  GTGAAAAA  565
            ||||||||
Sbjct  655  GTGAAAAA  662


 Score =  161 bits (87),  Expect = 5e-39
 Identities = 105/114 (92%), Gaps = 0/114 (0%)
 Strand=Plus/Plus

Query  1    CTCTCGCTTGGCGATAATGGCGGAATCACCATCTCACAGTGATGCTCAGCTTGTTGCTCA  60
            ||||| || |||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct  62   CTCTCTCTCGGCGATAATGGCGGAATCACCATCGCAGAGTGATGCACAGCTTGTTGCTCA  121

Query  61   TCAATCTCCTGGTCAGCAAGCGGAATCGGATCTGGCTTCTCTCGTCTTCGAAAT  114
            ||||||||||||||||||||| || ||||||||| | |||||||||||||||||
Sbjct  122  TCAATCTCCTGGTCAGCAAGCTGATTCGGATCTGACGTCTCTCGTCTTCGAAAT  175



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27126439380


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5