BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489418
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25580.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1690 0.0
> AT5G25580.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: DDT domain superfamily (TAIR:AT1G18950.1); Has 178
Blast hits to 178 proteins in 75 species: Archae - 0; Bacteria
- 4; Metazoa - 51; Fungi - 33; Plants - 60; Viruses - 1;
Other Eukaryotes - 29 (source: NCBI BLink). | chr5:8903505-8906311
FORWARD LENGTH=1466
Length=1466
Score = 1690 bits (915), Expect = 0.0
Identities = 1252/1401 (89%), Gaps = 77/1401 (5%)
Strand=Plus/Plus
Query 1 TCCCACAAAAACCCATTCATCTTCCACTTTCTCTCTCCGACAAAAATGGTAACGCTCCGC 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 TCCCACAAAAACCCATTCATCTTCCACTTTCTCTCTCCGACGAAAATGGTAACGCTCCGC 60
Query 61 CAGAGGAAGACGGTGGTGACCAGAGAACCTGAAC---CGAA-GATG--G-A--A------ 105
||||||| || |||||| ||| ||||||| |||| ||| || | | | |
Sbjct 61 CAGAGGACGATGGTGGTCACCGGAGAACCGGAACAGAAGAAGGAAGAAGAACGACTCTGC 120
Query 106 GAAG----AACGA--C--T-CTGCGA---AGACTTAACGATTCTTTCCTCCGATTCAGCT 153
|||| ||||| | | || ||| |||| |||||||| |||||||||||| ||
Sbjct 121 GAAGACTTAACGATTCTTTCCTCCGATTCAGAC--AACGATTC-TTCCTCCGATTCGGCG 177
Query 154 GTGAAGCACTTGCGTGGACGTTGGGAACTTGCTTCGGTTCTCAATTTCTTCAATGTCTTT 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GTGAAGCACTTGCGTGGACGTTGGGAACTTGCTTCGGTTCTCAATTTCTTCAATGTCTTT 237
Query 214 GGACCACTTGTCTCGGAGAAATTGAAGTTAACAGCTGAAGAAATTGAGATGGGTCTTATA 273
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 238 GGACCACTTGTCTCGGAGAAATTGAAGTTCACAGCTGAAGAAATTGAGATGGGTCTTATC 297
Query 274 GAGTCCAACACTACAAATGCTCAGCTTCACATAGCTCTTTTGAAGGGGATACCACCGGTG 333
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 298 GAGTCCAACACTACAAATGCTCAGCTTCACATTGCACTTTTGAAGGGGATACCACCGGTG 357
Query 334 AATAAAACGCTAGACGATGCAAATGCTTGGATCACGGTGTTGTGTAAGAAACTTGCTCCA 393
||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 358 AATAAAACGCTTGACGATGCAAATGCATGGATCACGGTGTTGTGTAAGAAACTAGCTCCA 417
Query 394 TGGTGGCCATGGATTGCTAAGGGTGAAATTCCTATTACTGCTAACAAAGGGGAGGAGATA 453
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||
Sbjct 418 TGGTGGCCATGGATTGCTAAGGGTGAAATTCATATTACTGTTAACAAAGGGGAGGAAATA 477
Query 454 TCTGAATACCAACGACTTGACCCTATTAACCGCCTGAAGATTCTT-AAGGCACTGTGTGA 512
|||||||||||| |||||||| |||||||||||||||||||| || |||||||| |||||
Sbjct 478 TCTGAATACCAAGGACTTGACTCTATTAACCGCCTGAAGATT-TTGAAGGCACTTTGTGA 536
Query 513 GCTTCGAGTTCAACAAGATGATGCTCGTACGTATATTCAAGAAAATACCAAGGAAGGAGA 572
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 537 GCTTCGAGTTCAACAAGATGATGCACGTTCGTATATTCAAGAAAATACCAAGGAAGGAGA 596
Query 573 CAGGGATTCCT-GTTTCCGCAAAAGGAAGTTAGGAGGAGATGGAAAGAAGACGTCTTACT 631
| ||||||| | |||| ||||| |||||| |||||||||||||||||||||| ||||| |
Sbjct 597 CTGGGATTC-TAGTTTACGCAAGAGGAAGCTAGGAGGAGATGGAAAGAAGACTTCTTATT 655
Query 632 GGTTTGATGGTAATGACATCCAGGGGTACAGAATATATAGGGAAGTCAATGAAATCTCAA 691
|||||||||||||||| ||||| || |||||| |||||||||||||||||| ||||||||
Sbjct 656 GGTTTGATGGTAATGATATCCAAGGTTACAGATTATATAGGGAAGTCAATGGAATCTCAA 715
Query 692 AGAAGAATGCTGGCTCAGATTTATCTTGTTTGAGCTGGGAAACTGAAGCAACCAATCTAG 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AGAAGAATGCTGGCTCAGATTTATCTTGTTTGAGCTGGGAAACTGAAGCAACCAATCTAG 775
Query 752 ATGAATTTCAGAGAGTCGCTAGGGAGTTATCATCAAGCAAAGCTTCTTCTTTGGCTGCAA 811
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 776 ATGAATTTCAGAGTGTCGCTAGAGAGTTATCATCAAGCAAAGCTTCTTCTTTGGCTGCAA 835
Query 812 TTGG-CGGGATGATTGAGACAGAAGCTATACCCGTTGTTGAGAAATATCATaaaaagaaa 870
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 836 CTGGGCAG-ATGATTGAGACAGAAGCTATACCCGTTGTTGAGAAATATCATAAAAAGAGA 894
Query 871 gaaaaggccatgaaaaagaaaaTGAAGCAAGAGATGGTTGTTAAT-T---T--CTCGCTT 924
|||| |||||| ||||||||||||||| |||||||||| |||||| | | ||||| |
Sbjct 895 GAAAGGGCCATAAAAAAGAAAATGAAGGAAGAGATGGTCGTTAATGTCAATTTCTCGCGT 954
Query 925 CCTCTCCGAACTACCCGTTCTTGTCGTAATCGCATGCCTGCTACTTACACCTTTGATGAG 984
|||||||||||||| |||||||||||||| | |||||||||||||||||||||||| |||
Sbjct 955 CCTCTCCGAACTACTCGTTCTTGTCGTAACCACATGCCTGCTACTTACACCTTTGACGAG 1014
Query 985 TATGACAAGATGATCAGTGATGCCGTGGAAGAATCAGAGGAAACCGATGGAGATGAGGTA 1044
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1015 TATGACAAGATGATCAGTGATGCCGTGGAAGAAACAGAGGACACCGATGGAGATGAGGTA 1074
Query 1045 CAAGGAAGGGAGCAACAAAGTACCTCAAACGACAGTTCTGAAGGTAACAATGTGAAGTCA 1104
|||||||||| ||||||||| ||||| ||| | | || | | || ||||||
Sbjct 1075 GAAGGAAGGGATCAACAAAGTGCCTCATTGGAC--T-C--AA---A-CGAT---AAGTCA 1122
Query 1105 ACAGAGGATGTAGGCGATGAAGCACTTGAAATCAACAATGACGATGAAAAAGAGAATGAG 1164
||||||| || || | | | | | |||||| ||||||||||||| ||||||||||||
Sbjct 1123 ACAGAGGTTGAAG-C-A-G---C--T-GAAATCCACAATGACGATGATAAAGAGAATGAG 1173
Query 1165 AAAAGCAAGGAGGACGCAGAGCCAAAGGAAGAGTTCGGTGCCAAAAACAGGTTGAGACAA 1224
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1174 ATAAGCAAGGAGGACGCAGAGCCAAAGGAAGAGTTTGGTGCCAAAAACAGGTTGAGACAA 1233
Query 1225 AGAGTTACCAGGAACTCAGCCATCTGTTAGTTTAAAACCTCATTGTTGCTGAAGAAATAG 1284
||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct 1234 AGAGTTACCAGGAACTCAGCCATCTGTTAATTTAAT-CCTCAATGTTGTTGAAGAAATAG 1292
Query 1285 TAAAAAGCTTTTGAAG---------T-GTT--GTCTGTTGGTGGAGAGACCAAGCTTTT- 1331
||||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct 1293 TAAAAAGCTTTTGAACAACAAAACATCGTTTTGTCTGTTGGTGGAGAGACCAAGCTTTTT 1352
Query 1332 GATTAGAAGGTTTAGAACTTT 1352
||||||||||||||| |||||
Sbjct 1353 GATTAGAAGGTTTAGGACTTT 1373
Score = 97.1 bits (52), Expect = 4e-19
Identities = 52/52 (100%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 1352 TATATGATGATGATATACTCCATTCCTAACAGTGTAGATTTGACTCTTATTA 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 TATATGATGATGATATACTCCATTCCTAACAGTGTAGATTTGACTCTTATTA 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69126150465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5