BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489422
Length=1878
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25630.2 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1421 0.0
> AT5G25630.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:8947223-8949457 FORWARD LENGTH=2036
Length=2036
Score = 1421 bits (769), Expect = 0.0
Identities = 903/965 (94%), Gaps = 20/965 (2%)
Strand=Plus/Plus
Query 1 TTTTCCGACAAAACATGGGAGATG-T--TGAGGAGAAGAAGAAAGTACTTCCTATGTCTG 57
|||||||||||||||||| ||||| | | |||||||||||||||||| ||| |||||||
Sbjct 190 TTTTCCGACAAAACATGGAAGATGTTAATCAGGAGAAGAAGAAAGTACCTCCAATGTCTG 249
Query 58 AACCAGAAAGATCCACACCCA-T-----T--------A-AGTATCGTTTCTGCAAGTCAT 102
||||||||||||||||||| | | | | |||||||||||||||||||||
Sbjct 250 AACCAGAAAGATCCACACCGATTAAGACTACAGGAGGACAGTATCGTTTCTGCAAGTCAT 309
Query 103 GTGGTGAAGGAAGTAGTTGTAGGACAGTGAGGTCAAGAACGAAGCTTATGAACGTTTTGA 162
||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 310 GTGTTGAAGGAAGTAGTTGCAGGACAGTGAGGTCAAGAACCAAGCTTATGAACGTTTTGA 369
Query 163 TAGAACGTGGACGGCCTCACGAGGCTCAAACTGTTTTCAAAACATTGGCAGAGACGGGTC 222
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 370 TAGAACGTGGAAGACCTCACGAGGCTCAAACTGTTTTCAAAACATTGGCAGAGACGGGAC 429
Query 223 ATAGGCCGTCTTTGATCAGTTACACAACTCTTTTAGCTGCAATGACGGTTCAGAAGCAGT 282
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 430 ATAGACCGTCTTTGATCAGTTACACAACTCTTTTAGCTGCAATGACGGTTCAGAAACAGT 489
Query 283 ATGGTTCCATAAGCTCTATAGTCTCTGAAGTGGAACAGAGCGGGA-CAAAGCCTGATTCC 341
|||||||||||||||||||||||||||| |||||||||||||| | |||| | ||||||
Sbjct 490 ATGGTTCCATAAGCTCTATAGTCTCTGAGGTGGAACAGAGCGGAACCAAA-CTTGATTCT 548
Query 342 ATCTTCTTCAATGCTGTAATTAACGCTTTCTCTGAGTCCGGTAACATGGAAGATGCGGTG 401
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 ATATTCTTCAATGCTGTTATTAACGCTTTCTCTGAGTCCGGTAACATGGAAGATGCGGTG 608
Query 402 CAGGCTCTGTTGAAAATGAAAGAACTTGGTCTAAATCCAACTACGAGTACTTACAACACT 461
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 609 CAAGCTCTGTTGAAAATGAAAGAACTTGGTCTAAATCCGACTACGAGTACTTACAACACT 668
Query 462 TTGATTAAAGGGTATGGGATTGCAGGTAAGCCTGAGAGATCATCTGCGTTACTGGATCTT 521
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 669 TTGATTAAAGGGTATGGGATTGCAGGTAAGCCTGAGAGATCATCTGAGTTACTGGATCTT 728
Query 522 ATGTTGGAGGAGAGCAACGTCGATGTTAGACCGAATGTAAGGACGTTTAATGTGCTGGTG 581
|||||||| ||| |||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 729 ATGTTGGAAGAGGGCAACGTCGATGTTGGACCGAATATAAGGACGTTTAATGTGTTGGTG 788
Query 582 CAAGCCTGGTGCAAGAAAAAGAAGGTGGAGGAGGCGTGGGAAGTGGTGAATAAGATGGAA 641
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 789 CAAGCCTGGTGCAAGAAGAAGAAGGTGGAGGAGGCGTGGGAAGTGGTGAAGAAGATGGAG 848
Query 642 GAGTGTGGAGTTAGGCCGGATACAGTGACTTATAACACGATTGCAACTTGTTATGTGCAG 701
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 849 GAGTGTGGAGTTAGGCCGGATACGGTGACTTATAACACGATTGCAACTTGTTATGTGCAG 908
Query 702 AAAGGAGAGACTGTGAGAGCTGAGAGTGAGGTGGTTGAGAAGATGGTTATGAAGGAGAAG 761
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 AAAGGAGAGACCGTGAGAGCTGAGAGTGAGGTGGTTGAGAAGATGGTTATGAAGGAGAAG 968
Query 762 GCTAAACCAAACGGAAGGACTTGTGGGATAGTTGTGGGAGGGTATTGCAGAGAAGGGAGA 821
|| ||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 969 GCGAAACCGAACGGAAGAACGTGTGGGATTGTTGTGGGAGGGTATTGCAGAGAAGGGAGA 1028
Query 822 GTGAGAGATGGTTTGAGGTTTGTGCGGAGAATGAAGGAAATGAGAGTTGAAGCGAACCTC 881
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1029 GTGAGAGATGGTTTGAGGTTTGTGCGGAGAATGAAGGAAATGAGAGTGGAAGCGAATCTT 1088
Query 882 GTGGTCTTCAATTCCTTGATAAATGGCTTTGTTGAAGTCATGGACCGTGATGGTATCGAT 941
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1089 GTGGTCTTCAATTCTTTGATCAATGGCTTTGTTGAAGTCATGGACCGTGATGGTATCGAT 1148
Query 942 GAGGT 946
|||||
Sbjct 1149 GAGGT 1153
Score = 1341 bits (726), Expect = 0.0
Identities = 763/781 (98%), Gaps = 2/781 (0%)
Strand=Plus/Plus
Query 943 AGGTTCTTACCTTGATGAAGGAGTGTAACGTGAAGGCAGATGTAATCACGTACAGTACTG 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 AGGTTCTTACCTTGATGAAGGAGTGTAACGTGAAGGCAGATGTAATCACGTACAGTACTG 1284
Query 1003 TGATGAACGCTTGGAGCTCAGCTGGATACATGGAGAAAGCTGCACAAGTGTTTAAAGAAA 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 TGATGAACGCTTGGAGCTCAGCTGGATACATGGAGAAAGCTGCACAAGTGTTTAAAGAAA 1344
Query 1063 TGGTTAAAGCAGGAGTCAAACCAGACGCTCACGCTTACAGCATTTTAGCGAAAGGGTACG 1122
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1345 TGGTTAAAGCAGGAGTCAAACCAGACGCTCACGCGTACAGCATTTTAGCTAAAGGGTACG 1404
Query 1123 TTAGAGCAAAAGAGCCAAAGAAAGCTGAGGAGCTTCTTGAGACATTGATAGTTGAATCCA 1182
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1405 TTAGAGCAAAAGAGCCAAAGAAAGCAGAGGAGCTTCTTGAGACATTGATAGTTGAATCCA 1464
Query 1183 GGCCTAACGTTGTGATCTTCACCACGGTGATCAGCGGGTGGTGTAGCAGTGGAAGTATGG 1242
||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct 1465 GGCCTAACGTTGTGATCTTCACCACTGTGATTAGCGGGTGGTGTAGCAATGGAAGTATGG 1524
Query 1243 ATGATGCAATGAGGGTTTTCAACAAGATGTGCAAGTTCGGGGTTTCGCCAAATATAAAGA 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 ATGATGCAATGAGGGTTTTCAACAAGATGTGCAAGTTCGGGGTTTCGCCAAATATAAAGA 1584
Query 1303 CGTTTGAGACGT-TGATGTGGGGATACCTAGAGGTGAAGCAACCATGGAAAGCAGAAGAG 1361
|||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1585 CGTTTGAGAC-TCTGATGTGGGGTTACCTAGAGGTGAAGCAACCATGGAAAGCAGAAGAA 1643
Query 1362 GTTTTGCAGATGATGAGAGGGTTTGGTGTGAAGCCTGAGAATTCCACCTTCTTGCTGTTA 1421
|||||||||||||||||||| | |||||| |||||||||||||| |||||||||||||||
Sbjct 1644 GTTTTGCAGATGATGAGAGGATGTGGTGTAAAGCCTGAGAATTCTACCTTCTTGCTGTTA 1703
Query 1422 GCAGAAGCTTGGCGTGTCGCGGGACTCACTGATGAGTCGAACAAGGCTATCAATGCATTG 1481
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1704 GCAGAAGCTTGGCGTGTCGCGGGACTCACTGATGAGTCGAACAAAGCTATCAATGCATTG 1763
Query 1482 AAATGTAAGGACATAGAGATCGCAAAGTTAGAGAAGCTGTACCAAAAACAGTCCTCTGGT 1541
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 AAATGTAAAGACATAGAGATCGCAAAGTTAGAGAAGCTGTACCAAAAACAGTCCTCTGGT 1823
Query 1542 AGTAGTTTTAATCTATTGCAGATTCCAGTCGGGAAACGGGAGCTTCCAACCGCAAAAGCG 1601
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1824 AGTAGTTTTAACCTATTGCAGATTCCAGTCGGGAAACGGGAGCTTCCAACCGCAAAAGCG 1883
Query 1602 ATGAATCTTTCTGCTTGTAAACTCGGAGCTCGAGTGCCAATCATATGCCAGAAGCAGTCC 1661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1884 ATGAATCTTTCTGCTTGTAAACTCGGAGCTCGAGTGCCAATCATATGCCAGAAGCAGTCC 1943
Query 1662 CAAGCACAGTTTGGGATCAGTGGACAGTTTGTACATTCTTGTACAGTGTTCTTGAACTGA 1721
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1944 CAAGCACAGTTTGGGATCAGTGGACAGTTTGTACATTCTTGTACAGTGTTCTTGAGCTGA 2003
Query 1722 A 1722
|
Sbjct 2004 A 2004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92971409340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5