BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489425
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25752.1 | Symbols: ATRBL11, RBL11 | rhomboid-like protein 1... 1506 0.0
> AT5G25752.1 | Symbols: ATRBL11, RBL11 | rhomboid-like protein
11 | chr5:8951264-8953396 REVERSE LENGTH=1155
Length=1155
Score = 1506 bits (815), Expect = 0.0
Identities = 935/992 (94%), Gaps = 12/992 (1%)
Strand=Plus/Plus
Query 39 ctctcaaatctcaatgtctcagcttcttcacgttcaccgtctctctctcCCACAATCGTC 98
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||
Sbjct 61 CTCTCAAATCTCAATGTCTCAGCTTCTTCACCTTCACCGTCTCTCTCTTCCACAATCATC 120
Query 99 TCTTCGTTTCAGATTCCCGCCTTTACATCGGCGCCGTGCAGCTTCGTCGCCGTCTAACTC 158
|||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 121 TCTTCGTTTCAGATTCCCGCCTTTACATCGCCGACGTGCAGCTTCGTCGCCAACTAACTC 180
Query 159 AACTGAA-TCCACC-G-TGTTTCGTTCTCTCACAGTCTCCAGATCTCAAATAACTTGCAG 215
|||| || || || | ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 181 AACTCAACCCCCCCTGCAGTTTCGTCCTCTCACAGTCTCTAGATCTCAAATAACTTGCAG 240
Query 216 ATTCAGCCAATCAGATATTACGCCACAATTTGAATTGGATAAAGCACAAGACAATCGAAA 275
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 ATTCAGCCAATCCGATATTACGCCACAATTTGAATTGGATAAAGCAAAAGACAATCGAAA 300
Query 276 ACCACAAAAGCGAGCGAATGGCATATTTTGGATCATACTTATCAATCTTGGCATATATGT 335
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 301 ACCACAAAAGCGAGCAAATGGCATATTTTGGATCATACTTATCAATCTGGGCATATATCT 360
Query 336 TGCTGATCACTTCTTTCAGGTTCGCGGGATCAAATCTTTGTATTTGTATCACAATTTTCC 395
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 TGCTGATCACTTCTTTCAGGTTCGTGGGATCAAATCTTTGTATTTGTATCACAATTTTCC 420
Query 396 GGCATGGTACCAGTTTGTGACTGCTACATTCTGTCATGCTAACTGGAACCATCTCTCCAG 455
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGCATGGTATCAGTTTGTGACGGCTACATTCTGTCATGCTAACTGGAACCATCTCTCCAG 480
Query 456 CAATCtttttttCTTGTACATCTTTGGAAAGCTTGTTGAAGAAGAAGAAGGAAACTTTGG 515
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAATCTTTTTTTCTTGTACATATTTGGAAAGCTTGTTGAAGAAGAAGAAGGAAACTTTGG 540
Query 516 TTTGTGGCTCTCTTACTTGTTCACTGGTGTTGGAGCTAACCTGGTTTCTTGGTTAGTTTT 575
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 541 TTTGTGGCTCTCCTACTTGTTCACTGGTGTTGGAGCTAACCTTGTTTCTTGGTTAGTTTT 600
Query 576 ACCGAGAAATGCTGTTTCTGTTGGAGCCTCGGGAGCTGTTTTTGGGTTATTTGCAATCAG 635
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 601 ACCGAGAAATGCTGTTTCTGTTGGTGCCTCGGGAGCTGTTTTTGGGTTATTTGCTATCAG 660
Query 636 TGTCCTCGTCAAGATGTCTTGGGATTGGAGGAAAATCCTTGAAGTTCTTATATTGGGTCA 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGTCCTCGTCAAGATGTCTTGGGATTGGAGGAAAATCCTTGAAGTTCTTATATTGGGTCA 720
Query 696 GTTCGTTGTTGAGAGGGTAATGGAAGCAGCTCAGGCATCGGCTGGATTATCAGGAACTAT 755
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 721 GTTCGTTATTGAGAGGGTAATGGAAGCAGCTCAGGCGTCGGCTGGATTATCAGGAACTAT 780
Query 756 ATATGGTGGCTACTCTTTACAAACTGTTAATCACATTGCTCATCTCTCTGGTGCTCTTGT 815
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 781 ATATGGTGGATACTCTTTACAAACTGTTAATCACATTGCGCATCTCTCTGGTGCTCTTGT 840
Query 816 TGGTGTTGTTTTAGTTTGGCTTCTCAGCAAATTCCCTTCGGAATCTGTGGATCAAGAAGT 875
||| ||||||||||||||||||||||||||||| ||||||| |||| |||||||||| ||
Sbjct 841 TGGGGTTGTTTTAGTTTGGCTTCTCAGCAAATTTCCTTCGGCATCTATGGATCAAGACGT 900
Query 876 TAAAAAGTCCCCGCAAAAGTGAGGAGACAATCGGGATAACCTTTTCTTGTAAGGAACATA 935
|||||||||| || |||| ||| ||||||| | | | ||||| |||||||||||||
Sbjct 901 TAAAAAGTCCTCGTAAAAATGACGAGACAA-----A-A-C-TTTTCGTGTAAGGAACATA 952
Query 936 CTAGCTGTCCAGTGAATGCAAGGCAGATGAAACAATTGATAGATTGACAAAATATCCTTG 995
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 953 CTAGCTGTCCAGTGAATGCAAGGTAGATGAAACGATTGATAGATTGACAAAATATCCTTG 1012
Query 996 TAAAAAT-CTGAAGAACGGGCTCTAATCCGAG 1026
|||||| ||||||||||| |||||| |||||
Sbjct 1013 TAAAAAAACTGAAGAACGGTCTCTAAACCGAG 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5