BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489440
Length=1327
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25880.1 | Symbols: ATNADP-ME3, NADP-ME3 | NADP-malic enzyme... 1533 0.0
AT5G11670.1 | Symbols: ATNADP-ME2, NADP-ME2 | NADP-malic enzyme... 1040 0.0
> AT5G25880.1 | Symbols: ATNADP-ME3, NADP-ME3 | NADP-malic enzyme
3 | chr5:9024549-9028377 FORWARD LENGTH=1884
Length=1884
Score = 1533 bits (830), Expect = 0.0
Identities = 973/1039 (94%), Gaps = 22/1039 (2%)
Strand=Plus/Plus
Query 278 TGCAGTTTGAAGATTTTGCAAACCACCATGCGTTTGAGCTTCTCTCTAAGTACTGCTCCA 337
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 827 TGCAGTTTGAAGATTTTGCAAACCACCATGCGTTTGAGCTTCTCTCTAAGTACTGCTCAA 886
Query 338 GTCATCTCGTTTTCAATGATGATATCCAAGTAACTGCATCAGTGGTTCTTGCCGGGCTTA 397
|||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct 887 GTCATCTCGTTTTCAATGATGATATCCAAGGAACTGCATCTGTGGTGCTTGCCGGGCTTA 946
Query 398 TTGCGGCTCAGAAAGTACTTGGTAAAAGCCTAGCTGACCATACTTTTTTGTTCTTGGGGG 457
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 947 TTGCGGCTCAGAAAGTACTTGGTAAAAGCCTAGCTGACCATACCTTTTTGTTCTTGGGTG 1006
Query 458 CTGGAGAGGCTGGAACCGGAATCGCTGAGCTAATTGCTCTTAAAATTTCGAAAGAGACTG 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 CTGGAGAGGCTGGAACCGGAATCGCTGAGCTAATTGCTCTTAAAATTTCGAAAGAGACTG 1066
Query 518 GAAAACCAATCGCTGAGACCCGGAAGAAGATTTGGCTTGTGGACTCCAAGGGACTGATCG 577
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1067 GAAAACCAATCGATGAGACCCGGAAGAAGATTTGGCTTGTGGACTCCAAGGGACTGATTG 1126
Query 578 TTAGCTCGCGCAAAGAATCTCTTCAGCATTTCAAGCAGCCATGGGCGCATGAGCACAAGC 637
||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 1127 TTAGCGAACGCAAAGAATCGCTTCAACATTTCAAGCAGCCATGGGCGCATGACCACAAGC 1186
Query 638 CCGTCAAGGACCTCTTGGGAGCTGTTAATGCAATCAAGCCAACCGTTCTTATTGGAACAT 697
| |||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| |
Sbjct 1187 CTGTCAAGGAGCTCTTGGCAGCTGTTAATGCAATCAAGCCAACTGTTCTTATTGGAACCT 1246
Query 698 CCGGTGTGGGTAAGACATTCACTAAGGAAGTAGTGGAGGCCATGGCCACCTTGAACGAGA 757
| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1247 CTGGTGTGGGTAAGACTTTCACAAAGGAAGTAGTGGAGGCCATGGCTACCTTGAACGAGA 1306
Query 758 AACCATTGATTCTTGCTCTCTCAAACCCAACTTCTCAAGCCGAGTGCACAGCGGAAGAAG 817
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1307 AACCATTGATTCTTGCACTCTCAAACCCAACTTCTCAAGCCGAGTGCACGGCGGAAGAAG 1366
Query 818 CTTACACATGGACCAAGGGTCGTGCAATCTTTGCAAGTGGAAGCCCGTTTGACCCTGTTG 877
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 CTTACACATGGACCAAGGGTCGTGCAATCTTTGCAAGTGGAAGCCCGTTTGACCCTGTTC 1426
Query 878 AGTATGATGGCAAAAAATTCATGCCTGGCCAGGCAAACAACTGCTACATTTTCCCGGGTC 937
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||
Sbjct 1427 AGTATGATGGCAAAAAATTCACGCCTGGCCAGGCAAACAACTGTTACATTTTCCCTGGTC 1486
Query 938 TCGGTCTTGGTTTGATCATGTCCGGTGCCATACGTGTTCGCGATGACATGCTTCTCGCAG 997
||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||
Sbjct 1487 TCGGTCTTGGTTTGATCATGTCCGGTGCCATTCGTGTCCGTGATGACATGCTTCTAGCAG 1546
Query 998 CTTGTAAGGAAGCGCTGGCCTCCCAAGTGACAGAAGAGAATTTCGCTAACGGATTGATCT 1057
| | | |||||||||||||||||||||||| ||||||||||| || |||||| ||||||
Sbjct 1547 C-T-T-CGGAAGCGCTGGCCTCCCAAGTGACGGAAGAGAATTTTGCGAACGGACTGATCT 1603
Query 1058 ATCCGCCTTTTGCAAACATCAGAAAGATCTCAGCTAACATTGCAGCCAGTGTGGGAGCCA 1117
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1604 ATCCGCCTTTTGCAAACATCAGAAAGATCTCTGCTAACATTGCAGCCAGTGTGGGAGCCA 1663
Query 1118 AAACCTACGAACTAGGACTGGCATCGAATCTGCCTCGTCCTAAGGACCTCGTAAAGATGG 1177
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 AAACCTACGAACTCGGACTGGCATCGAATCTGCCTCGTCCTAAGGACCTCGTAAAGATGG 1723
Query 1178 CAGAGAGCTGCATGTACAGTCCTGTCTACAGAAACTTCCGTTAAAACATTCttttt---- 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1724 CAGAGAGCTGCATGTACAGTCCTGTCTACAGAAACTTCCGTTAAAACATTCTTTTTAACA 1783
Query 1234 ttt-------a-cttttt-------gcttttcagttttGGTGCTTTCTATATAGGATAAC 1278
||| | |||||| |||||||||||||||||||||||||||| || |||
Sbjct 1784 TTTTTGGCTCAGCTTTTTACTTTTTGCTTTTCAGTTTTGGTGCTTTCTATATACGACAAC 1843
Query 1279 TTCTACACTAtttttactt 1297
||||| ||||||| |||||
Sbjct 1844 TTCTAAACTATTTATACTT 1862
Score = 431 bits (233), Expect = 9e-120
Identities = 267/283 (94%), Gaps = 4/283 (1%)
Strand=Plus/Plus
Query 1 ATGGGCACCGATCAAACTCAGATCTCCGACGAATATGTCT-CCGGTAACAAG-TCCGGTG 58
||||||||| |||| |||||||||||||| |||||||| | |||||||| || |||||||
Sbjct 1 ATGGGCACCAATCAGACTCAGATCTCCGATGAATATGT-TACCGGTAAC-AGTTCCGGTG 58
Query 59 TCGGTGGTGGAATCTCCGATGTTTACGGTGAAGATAGTGCCACACTGGATCAACTCGTCA 118
| ||||| |||||||| ||||| |||||||||||||||||||| |||||||||| ||||
Sbjct 59 TAGGTGGGGGAATCTCTGATGTATACGGTGAAGATAGTGCCACGTTGGATCAACTTGTCA 118
Query 119 CTCCTTGGGTTACCTCTGTCGCAAGTGGGTATACATTGATGCGTGATCCTCGTTACAATA 178
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 119 CTCCTTGGGTTACCTCTGTCGCAAGTGGGTATACATTGATGCGTGATCCACGTTACAATA 178
Query 179 AAGGACTTGCATTTACTGATAAAGAGAGAGATGCTCATTACATAACTGGTCTTCTTCCTC 238
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAGGACTTGCTTTTACTGATAAAGAGAGAGATGCTCATTACATAACTGGTCTTCTTCCTC 238
Query 239 CTGTAGTTTTATCTCAAGATGTTCAGGAGAGGAAAGTGATGCA 281
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTGTAGTTTTATCTCAAGATGTTCAGGAGAGGAAAGTGATGCA 281
> AT5G11670.1 | Symbols: ATNADP-ME2, NADP-ME2 | NADP-malic enzyme
2 | chr5:3754249-3758242 FORWARD LENGTH=2176
Length=2176
Score = 1040 bits (563), Expect = 0.0
Identities = 837/969 (86%), Gaps = 19/969 (2%)
Strand=Plus/Plus
Query 264 GGAGAGGAAAGTGAT-G--CAGTTTGAAGATTTTGCAAACCACCATGCGTTTGAGCTTCT 320
||||| ||||||| | | |||||||||||||||||||||||| |||||||||| ||| |
Sbjct 1018 GGAGA-GAAAGTGTTGGTTCAGTTTGAAGATTTTGCAAACCACAATGCGTTTGACCTTTT 1076
Query 321 CTCTAAGTAC--TGCTCCAGTCATCTCGTTTTCAATGATGATATCCA-AGTAACTGCATC 377
||||||||| || | || ||||| || |||||||| |||||||| || ||||||||
Sbjct 1077 GTCTAAGTACAGTGAT--AGCCATCTTGTCTTCAATGACGATATCCAGGGT-ACTGCATC 1133
Query 378 AGTGGTTCTTGCCGGGCTTATTGCGGCTCAGAAAGTACTTGGTAAAAGCCTAGCTGACCA 437
||||| ||||| ||||||||||| |||||||| || |||||||||| || ||||||||
Sbjct 1134 CGTGGTGCTTGCTGGGCTTATTGCCGCTCAGAAGGTGCTTGGTAAAAAACTGGCTGACCA 1193
Query 438 TACTTTTTTGTTCTTGGGGGCTGGAGAGGCTGGAACCGGAATCGCTGAGCTAATTGCTCT 497
||| || |||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 1194 TACCTTCCTGTTCTTGGGTGCCGGAGAGGCTGGAACCGGTATCGCTGAGCTAATTGCTCT 1253
Query 498 TAAAATTTCGAAAGAGACTGGAAAACCAATCGCTGAGACCCGGAAGAAGATTTGGCTTGT 557
||| |||||||||||||||||| || ||| ||||||||||||||||||||||||||||
Sbjct 1254 TAAGATTTCGAAAGAGACTGGAGCTCCCATCACTGAGACCCGGAAGAAGATTTGGCTTGT 1313
Query 558 GGACTCCAAGGGACTGATCGTTAGCTCGCGCAAAGAATCTCTTCAGCATTTCAAGCAGCC 617
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 1314 GGACTCCAAGGGACTGATTGTTAGCTCACGCAAAGAATCTCTTCAGCACTTCAAGCAGCC 1373
Query 618 ATGGGCGCATGAGCACAAGCCCGTCAAGGACCTC-TTGGGAGCTGTTAATGCAATCAAGC 676
|||||| ||||||||||| || || ||||||||| |||| |||||||||||||||||||
Sbjct 1374 ATGGGCACATGAGCACAAACCTGTGAAGGACCTCATTGGT-GCTGTTAATGCAATCAAGC 1432
Query 677 CAACCGTTCTTATTGGAACATCCGGTGTGGGTAAGACATTCACTAAGGAAGTAGTGGAGG 736
|||||||||| ||||||||||||||||||||| |||| ||||| || ||||| || ||||
Sbjct 1433 CAACCGTTCTCATTGGAACATCCGGTGTGGGTCAGACTTTCACAAAAGAAGTTGTCGAGG 1492
Query 737 CCATGGCCACCTTGAACGAGAAACCATTGATTCTTGCTCTCTCAAACCCAACTTCTCAAG 796
||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1493 CCATGGCTACCAACAACGAGAAACCGTTGATTCTTGCTCTCTCAAACCCTACTTCTCAAG 1552
Query 797 CCGAGTGCACAGCGGAAGAAGCTTACACATGGACCAAGGGTCGTGCAATCTTTGCAAGTG 856
| ||||| || || ||| | |||||||||||||||||||||||||||||||||| |||||
Sbjct 1553 CTGAGTGTACTGCTGAACAGGCTTACACATGGACCAAGGGTCGTGCAATCTTTGGAAGTG 1612
Query 857 GAAGCCCGTTTGACCCTGTTGAGTATGATGGCAAAAAATTCATGCCTGGCCAGGCAAACA 916
||||||| ||||| ||||||| ||| |||||||||| | | ||||||||||||||||||
Sbjct 1613 GAAGCCCATTTGATCCTGTTGTGTACGATGGCAAAACCTACTTGCCTGGCCAGGCAAACA 1672
Query 917 ACTGCTACATTTTCCCGGGTCTCGGTCTTGGTTTGATCATGTCCGGTGCCATACGTGTTC 976
| |||||||||||||| ||||| |||||||||||||||||||| || || || ||||| |
Sbjct 1673 ATTGCTACATTTTCCCTGGTCTGGGTCTTGGTTTGATCATGTCTGGGGCAATTCGTGTCC 1732
Query 977 GCGATGACATGCTTCTCGCAGCTTGTAAGGAAGCGCTGGCCTCCCAAGTGACAGAAGAGA 1036
| ||||||||||| |||||||||| | | |||| ||||| | |||||||||||||||
Sbjct 1733 GTGATGACATGCTCCTCGCAGCTTCT--G-AAGCATTGGCCGCACAAGTGACAGAAGAGC 1789
Query 1037 ATTTCGCTAACGGAT-TGATCTATCCGCCTTT-TGCAAACATCAGAAAGATCTCAGCTAA 1094
||| ||| || || | ||||||| ||||| || | ||||||||||| ||||||| |||||
Sbjct 1790 ATTACGCCAATGG-TCTGATCTACCCGCCATTCT-CAAACATCAGAGAGATCTCTGCTAA 1847
Query 1095 CATTGCAGCCAGTGTGGGAGCCAAAACCTACGAACTAGGACTGGCATCGAATCTGCCTCG 1154
|||||||||| |||| | ||||||||||| || || ||| |||| ||||| ||||| ||
Sbjct 1848 CATTGCAGCCTGTGTCGCCGCCAAAACCTATGACCTCGGATTGGCGTCGAACCTGCCACG 1907
Query 1155 TCCTAAGGACCTCGTAAAGATGGCAGAGAGCTGCATGTACAGTCCTGTCTACAGAAACTT 1214
| | ||||| || || ||| | ||||||||| |||||||||| ||||| ||||||||||
Sbjct 1908 TGCAAAGGATCTTGTCAAGTTTGCAGAGAGCAGCATGTACAGCCCTGTGTACAGAAACTA 1967
Query 1215 CCGTTAAAA 1223
|||||||||
Sbjct 1968 CCGTTAAAA 1976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65310909045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5