BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489449
Length=1957
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26030.1 | Symbols: FC1, FC-I, ATFC-I | ferrochelatase 1 | c... 2630 0.0
AT5G26038.1 | Symbols: MIR860A | MIR860a; miRNA | chr5:9098791-... 217 4e-55
> AT5G26030.1 | Symbols: FC1, FC-I, ATFC-I | ferrochelatase 1 |
chr5:9096460-9099178 FORWARD LENGTH=2042
Length=2042
Score = 2630 bits (1424), Expect = 0.0
Identities = 1700/1824 (93%), Gaps = 55/1824 (3%)
Strand=Plus/Plus
Query 1 ACACACCTAACCTGCTTCAATGGAAAAGTCTCTCATATATTTACCTAACCAGACCTTCTT 60
|||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1 ACACGCCTAACCTGCTTCAATGGAAAAG----TCATACATTTACCTAACCAGACCTTCTT 56
Query 61 CGCATCTTCG---TCTTCCTTCATGATCTCTCAAATTCTCTTCC-TTTAAAGTCCTTAAT 116
|||||||||| ||||||||| |||||||||||||||||| || ||||||||||| |||
Sbjct 57 CGCATCTTCGTCTTCTTCCTTCGTGATCTCTCAAATTCTCTCCCTTTTAAAGTCCTAAAT 116
Query 117 CAAAACCCTAAACCCATAAATCCAACCCCTCCTTTCG-A----T--TTCT-TCAAtctct 168
||||||||||||||||||||||||| |||||| |||| | | |||| || |||||
Sbjct 117 CAAAACCCTAAACCCATAAATCCAATCCCTCCATTCGAATTCTTCATTCTCTCTCTCTCT 176
Query 169 ctctctcA-AATT-C-G-T-AG--CT---A--TG--G--A---A-GCAACAGCGTTATCA 208
|||||||| |||| | | | | || | || | | | ||||| || ||||||
Sbjct 177 CTCTCTCACAATTACTGATCGGTTCTGAAATTTGTAGCTATGCAGGCAACGGCTTTATCA 236
Query 209 TCTGGGTTTAATCCTCTAATGAAGCGTAAAGATCACAGATTTCCCAGGTCAT-ATGCTCA 267
|||||||| |||||||||| ||| |||||||||||||||||||||||||||| | ||||
Sbjct 237 TCTGGGTTCAATCCTCTAACGAAACGTAAAGATCACAGATTTCCCAGGTCATGCT-CTCA 295
Query 268 GAGAAAGTCTCTGTCTTTGATTCGATGCGATTTAAAAGAGAGATCTTTTGGACTCAACAA 327
|||||| |||||||||||||||| ||||||| |||||||||||||||| ||| |
Sbjct 296 GAGAAATTCTCTGTCTTTGATTCAATGCGATATAAAAGAGAGATCTTTCGGA---GA-GT 351
Query 328 CAATATTG-CGATCACGCATCGT-GATTTGAGATTTAAGACGAATGTGTTTGAGCAAGCT 385
| || || |||||||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct 352 C--TA-TGACGATCACGAATCGTGGA-TTGAGTTTTAAGACGAATGTGTTTGAGCAAGCT 407
Query 386 CATTCTGTGACTGGAGACTGTTCTTATGATGAGGCTAGAGCTAAAACACGTTCTC---TT 442
| |||||||||||||||||||||||||||||| || ||||||| ||||||||| ||
Sbjct 408 CGTTCTGTGACTGGAGACTGTTCTTATGATGAAACTTCAGCTAAAGCACGTTCTCATGTT 467
Query 443 GTTGCAGAAGATAAGATTGGTGTCTTGCTTTTGAATTTAGGTGGTCCTGAAACTCTTAAT 502
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GTTGCAGAAGATAAGATTGGTGTCTTGCTTTTGAATTTAGGTGGTCCTGAAACTCTTAAC 527
Query 503 GATGTTCAACCTTTCTTGTATAATCTCTTTGCTGATCCGGATATTATACGGCTTCCTAGA 562
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 528 GATGTTCAACCTTTCTTGTATAATCTCTTTGCTGATCCGGATATTATAAGGCTTCCTAGA 587
Query 563 CCATTTCAGTTTCTTCAAGGGACTATAGCTAAGTTTATATCTGTTGTTCGTGCTCCGAAA 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 CCATTTCAGTTTCTTCAAGGGACTATAGCTAAGTTTATATCTGTTGTTCGTGCTCCGAAA 647
Query 623 TCGAAAGAAGGGTATGCTGCTATTGGTGGTGGCTCTCCTTTGCGTAAAATAACTGATGAG 682
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TCTAAAGAAGGGTATGCTGCTATTGGTGGTGGCTCTCCTTTGCGTAAAATAACTGATGAG 707
Query 683 CAAGCAGATGCTATTCGGATGGCTTTGCAAGCGAAGAACGTTGCTGCTAATGTCTATGTC 742
||||| ||||||||| |||| ||||||||||||||||| |||||||||||||||||||
Sbjct 708 CAAGCGGATGCTATTAAGATGTCTTTGCAAGCGAAGAACATTGCTGCTAATGTCTATGTT 767
Query 743 GGTATGCGGTATTGGTATCCGTTCACTGAGGAGGCTGTTCAGCAGATAAAGAAGGACAAA 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GGTATGCGGTATTGGTATCCGTTCACTGAGGAGGCTGTTCAGCAGATAAAGAAGGACAAA 827
Query 803 ATTACAAGACTTGTTGTACTGCCATTGTACCCTCAGTATTCTATCTCCACGACGGGTTCA 862
||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 828 ATTACTAGACTTGTTGTACTGCCATTGTATCCTCAGTATTCTATCTCTACAACGGGTTCA 887
Query 863 AGCATCCGCGTTCTCCAAGACTTATTCAGGAAAGATCCGTACCTAGCTGGAGTGCCGGTA 922
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 888 AGCATACGCGTTCTCCAAGATTTATTCAGGAAAGATCCGTACCTAGCTGGAGTGCCGGTA 947
Query 923 GCTATTATACAGTCCTGGTACCAAAGGCGAGGCTATGTCAATTCCATGGCCGACCTCATT 982
||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 948 GCTATTATAAAGTCCTGGTACCAAAGGCGAGGCTATGTCAATTCTATGGCTGACCTCATT 1007
Query 983 GAGAAGGAGCTTCAAACTTTCTCTGATCCTAACGAGGTTATGATATTCTTCAGTGCCCAT 1042
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1008 GAGAAGGAGCTTCAAACTTTCTCTGATCCTAAGGAGGTTATGATATTCTTCAGTGCCCAT 1067
Query 1043 GGTGTTCCAGTCAGCTATGTAGAGAATGCTGGAGATCCGTACCAGAAGCAGATGGAAGAG 1102
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 GGTGTTCCGGTCAGCTACGTAGAGAATGCTGGAGATCCGTACCAGAAGCAGATGGAAGAG 1127
Query 1103 TGTATTGACTTGATAATGGAAGAGCTAAAAGCCAGAGGGGTTCTTAACGACCATAAATTG 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TGTATTGACTTGATAATGGAAGAGCTAAAAGCCAGAGGGGTTCTTAACGACCATAAATTG 1187
Query 1163 GCATACCAGAGTCGTGTTGGGCCTGTTCAATGGCTGAAGCCATACACCGATGAGGTTCTT 1222
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GCATACCAGAGTCGTGTTGGCCCTGTTCAATGGCTGAAGCCATACACCGATGAGGTTCTT 1247
Query 1223 GTCGACCTTGGTAAGAGTGGTGTTAAGAGTCTACTAGCCGTTCCAGTCAGTTTCGTGAGT 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 GTCGACCTTGGTAAGAGTGGTGTTAAGAGTCTACTAGCCGTTCCAGTCAGTTTCGTGAGT 1307
Query 1283 GAGCACATTGAGACACTTGAAGAGATAGACATGGAGTATAGGGAACTAGCTCTGGAATCA 1342
|||||||||||||||||||| |||||||||||||||||||||||| ||||||| || |||
Sbjct 1308 GAGCACATTGAGACACTTGAGGAGATAGACATGGAGTATAGGGAATTAGCTCTTGAGTCA 1367
Query 1343 GGGGTAGAGAACTGGGGACGGGTACCAGCACTAGGTCTCACACCATCCTTCATCACCGAC 1402
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1368 GGGGTAGAGAACTGGGGACGGGTACCCGCGCTAGGTCTCACACCATCCTTCATCACCGAC 1427
Query 1403 TTAGCTGATGCAGTGATAGAATCGCTTCCTTCAGCAGAAGCAATGTCGAACCCAAATGCA 1462
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1428 TTAGCTGATGCAGTGATAGAATCACTTCCTTCAGCAGAAGCAATGTCAAACCCAAATGCA 1487
Query 1463 GTACT---CTCAGAAGATAGCGAGTCGTCAGATGCTTTCAGTTACATTGTCAAGATGTTC 1519
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 GTGGTTGACTCAGAAGATAGCGAGTCGTCAGATGCTTTCAGTTACATTGTCAAGATGTTC 1547
Query 1520 TTCGGTTCAATTCTGGCTTTCGTCCTACTTCTCTCCCCAAAGATGTTCCATGCTTTCCGG 1579
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1548 TTCGGTTCGATTCTGGCTTTCGTCCTACTTCTCTCCCCAAAGATGTTCCATGCGTTCCGG 1607
Query 1580 AACCTATAGAATCTCGTTGGTTTTGTGTTA-GTCTTTTCTTGGAGAAATGTCTTGGTCAA 1638
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1608 AACCTATAGAATCTCGTTGGTTTTGTGTTAAGTCTTTTCTTGGAGAAATGTCTTGGTTAA 1667
Query 1639 ATTCAATATATATAGTCCAATCTATTGAAGTACTAGTACACCAGCTCTAATAAGCTGATG 1698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 ATTCAATATATATAGTCCAATCTATTGAAGTACTAGTACACCAGCTCTAATAAGCTGATG 1727
Query 1699 TAGGTAAGTAGTTCAATAGATTGGACTATATATATTAAATTTGACTAAGAGATAAACTAG 1758
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1728 TGGGTAAGTAGTTCAATAGATTGGACTATGTATATTAAATTTGACTAAGAGATAAACTAG 1787
Query 1759 AGAATGAGAATAAAGAATGAGAAA 1782
|||||| |||||||||||||||||
Sbjct 1788 AGAATGGGAATAAAGAATGAGAAA 1811
Score = 248 bits (134), Expect = 1e-64
Identities = 150/157 (96%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 1795 AAGATGCATTTAGCTATAAACATAGT-GCTACGTTCCTCTTAGAGATGAGGAGAGAATTA 1853
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1858 AAGATGCATTTAGCTATAAACATAGTGGCTACGTTCCTCTTAGAGATGAGGAGAGAATTA 1917
Query 1854 TATTCTATTATTAtttggtttctttttttcgtttttgtttggtttCAGTACTTCTTAATT 1913
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||
Sbjct 1918 TATTCTATTATTATTTGGTTTCTTTTCTTCGTTTTTGTATGGTTTCAATACTT---AATT 1974
Query 1914 GTCAAAAGTATCCTATAATTTTGTTGTTCATAGTGTT 1950
|||||||||||||||||||||||||||||||||||||
Sbjct 1975 GTCAAAAGTATCCTATAATTTTGTTGTTCATAGTGTT 2011
> AT5G26038.1 | Symbols: MIR860A | MIR860a; miRNA | chr5:9098791-9098916
FORWARD LENGTH=126
Length=126
Score = 217 bits (117), Expect = 4e-55
Identities = 123/126 (98%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 1626 ATGTCTTGGTCAAATTCAATATATATAGTCCAATCTATTGAAGTACTAGTACACCAGCTC 1685
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTGGTTAAATTCAATATATATAGTCCAATCTATTGAAGTACTAGTACACCAGCTC 60
Query 1686 TAATAAGCTGATGTAGGTAAGTAGTTCAATAGATTGGACTATATATATTAAATTTGACTA 1745
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TAATAAGCTGATGTGGGTAAGTAGTTCAATAGATTGGACTATGTATATTAAATTTGACTA 120
Query 1746 AGAGAT 1751
||||||
Sbjct 121 AGAGAT 126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96937252395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5