BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489451
Length=1277
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26040.2 | Symbols: HDA2 | histone deacetylase 2 | chr5:9099... 1927 0.0
> AT5G26040.2 | Symbols: HDA2 | histone deacetylase 2 | chr5:9099157-9101636
REVERSE LENGTH=1366
Length=1366
Score = 1927 bits (1043), Expect = 0.0
Identities = 1149/1201 (96%), Gaps = 4/1201 (0%)
Strand=Plus/Plus
Query 2 aaaaaaaTATCTCACCGCTTCAGACCAAAACCTCATATGACAGATACCCGAGTCATCTCG 61
|||||||||||||||||||||||||||||| || | |||||| |||||||||||||||||
Sbjct 5 AAAAAAATATCTCACCGCTTCAGACCAAAAACT-A-ATGACACATACCCGAGTCATCTCG 62
Query 62 ACCTGGACCGAGTTAACTCGCGACTCAGCTATTTACTTGCTCTTCACGTTTTTCGCCATC 121
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 63 ACCTGGACCGAGTTAACTCGCGACTTAGCTATTTACTTGCTCTTCACGTTTTTCGCAATC 122
Query 122 AAAGTCTACATATTTCTCTTCTGCTGTAATCGAACATCTGAATTGTCATCGTTTTCGATG 181
||||||| || ||||||||||| |||||||||||| |||||| | |||||||||||||||
Sbjct 123 AAAGTCTTCAAATTTCTCTTCTCCTGTAATCGAACCTCTGAAATATCATCGTTTTCGATG 182
Query 182 GCGACTCATCCCGAAGCTCTCCGGCGAGAACGAATTATCAACAGCAAACTCTACTTCGAC 241
||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||
Sbjct 183 GCGACTCATCCCGAAGCTCTCCGACGAGAGCGAATTCTCAACAGTAAACTCTACTTCGAC 242
Query 242 GTTCCTCTTTCAAAGGTTTCGATTATCTATTCATCGGCGTATGATATTTCGTTCATGGGT 301
|||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 243 GTTCCTCTTTCAAAGGTTTCGATTATCTATTCATCGTCTTATGATATCTCGTTCATGGGT 302
Query 302 ATTGAGAAATTGCACCCATTTGATTCTTCCAAGTGGGGTAGAGTTTGCAAGTTCCTTGTT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 ATTGAGAAATTGCACCCATTTGATTCTTCCAAGTGGGGTAGAGTTTGCAAGTTCCTTGTT 362
Query 362 TCAGATGGGTTTTTGGAGGAGAAAGCAATTATTGAGCCTCTTGAAGCTTCAAAGAATGAT 421
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 363 TCAGATGGGTTTCTGGAGGAGAAAGCAATTGTTGAGCCTCTTGAAGCTTCAAAGATTGAT 422
Query 422 CTTTTAGTGGTACATTCTGAGAACTACTTAAACAGCTTGAAAAGTAGTGCCACTGTTGCT 481
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 423 CTTTTAGTGGTACATTCTGAGAACTACTTAAACAGCTTGAAAAGCAGTGCCACTGTCGCT 482
Query 482 AGGATAACCGAGGTTCCACCAGTTGCCTTTTTTCCGAATTTTCTTGTGCAGCAGAAAGTT 541
||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 483 AGGATCACCGAGGTTGCACCAGTTGCGTTTTTTCCGAATTTTCTTGTGCAGCAGAAAGTT 542
Query 542 CTTTACCCATTCCGAAAGCAGGTTGGTGGGACGATTCTGGCAGCTAAACTCGCAACAGAA 601
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 543 CTTTACCCATTCCGAAAGCAGGTTGGTGGGACGATTCTGGCAGCTAAACTTGCAACAGAA 602
Query 602 CGTGGATGGGCAATAAACATTGGAGGAGGTTTTCATCATTGTACTGCGGAAAGAGGAGGC 661
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 603 CGTGGATGGGCGATAAACATTGGAGGAGGTTTTCATCATTGTACTGCTGAAAGAGGAGGC 662
Query 662 GGATTTTGTGCTTTTGCTGATATTTCTCTTTGTATTCACTTTGCATTTCTTCGTCTGCGA 721
|| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct 663 GGGTTTTGTGCTTTCGCTGATATTTCTCTCTGTATTCACTTTGCGTTTCTTCGTCTGAGA 722
Query 722 ATCTCCAGGGTTATGATAATAGATCTTGATGCTCATCAAGGGAATGGCCATGAAACAGAT 781
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 ATCTCGAGGGTTATGATAATAGATCTTGATGCTCATCAAGGGAATGGCCATGAAACAGAT 782
Query 782 CTCGGCGATGACAACCGCGTTTACATTCTGGATATGTACAATCCCGAGATATACCCTTTC 841
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 783 CTCGGCGATGACAACCGTGTTTACATTTTGGATATGTACAATCCCGAGATATACCCTTTC 842
Query 842 GATTATAGAGCTAGGAGATTTATCGACCAGAACA-TTGAGGTCGTGAGCGGGACCACCAC 900
|||||||||||||||||||||||||| ||||| | |||||||| |||||||||| |||||
Sbjct 843 GATTATAGAGCTAGGAGATTTATCGATCAGAA-AGTTGAGGTCATGAGCGGGACGACCAC 901
Query 901 CGATGAGTATTTGAGGAAACTAGATGAAGCCCTTGAGGTTGCTTCGCGAAACTTCCAACC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CGATGAGTATTTGAGGAAACTAGATGAAGCCCTTGAGGTTGCTTCGCGAAACTTCCAACC 961
Query 961 GGAGTTGGTAATTTACAATGCTGGGACAGATATATTAGACGGTGACCCTCTGGGACTTCT 1020
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 962 GGAGTTGGTAATTTACAATGCTGGCACAGACATATTAGATGGTGACCCTCTGGGACTTCT 1021
Query 1021 AAAGATAAGCCCCGATGGCATAACGAGTAGAGACGAGAAAGTCTTCAGATTTGCAAGGGA 1080
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1022 AAAGATAAGCCCCGATGGCATAACAAGTAGAGACGAGAAAGTCTTCAGATTTGCAAGGGA 1081
Query 1081 GAAAAATATTCCTCTTGTGATGCTAACTTCAGGTGGGTACATGAAGTCAAGCGCCAGAGT 1140
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1082 GAAAAATATTCCTCTTGTGATGCTAACCTCAGGCGGGTACATGAAGTCAAGCGCTAGAGT 1141
Query 1141 TATTGCGGATTCCATTGAGAATCTCTCACGTCAAGGGTTAATCCAGACACGACCGGAATA 1200
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1142 TATTGCGGATTCCATTGAGAATCTCTCACGGCAAGGGTTGATCCAGACACGACCGGAATA 1201
Query 1201 A 1201
|
Sbjct 1202 A 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62800881795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5