BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489453

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26070.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...   494    2e-139


> AT5G26070.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr5:9106341-9106649 FORWARD LENGTH=309
Length=309

 Score =  494 bits (267),  Expect = 2e-139
 Identities = 296/310 (95%), Gaps = 2/310 (1%)
 Strand=Plus/Plus

Query  1    ATGGTGTCTCTAGGACTTTCCATCACCCTAGTTTTTCTCTTGGCAATCATATTCACAGTT  60
            ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||
Sbjct  1    ATGGTGTCTCTAGGACTTTCCTTCACTCTAGTTTTTCTCTTGGCAATCTTATTCACAGTT  60

Query  61   GCTGAAGCTAAAAACAACAGAAAACTCCT-ACCAAGTCCCACTAACTACCAACCACTATA  119
            ||||||||||| ||||||||||||||| | |  || ||||||||||||||||||||||||
Sbjct  61   GCTGAAGCTAACAACAACAGAAAACTCTTGA-AAACTCCCACTAACTACCAACCACTATA  119

Query  120  TTATCCTTCTCCATCGCCTTATCGGCCTCCAGTTACTCTTTCTCCTCCTCCTCCACCTCC  179
            || |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct  120  TTCTCCTTCTCCATCGCCTTATCGGTCTCCAGTTACTCTTCCTCCTCCTCCTCCACATCC  179

Query  180  GGCTTATTCTCGTCCGGTTGCTCTTCCTCCCACACTTCCAATTCCTCATCCTTCTCCTCA  239
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  180  GGCTTATTCTCGTCCGGTTGCTCTTCCTCCCACACTTCCGATTCCTCATCCTTCTCCTCA  239

Query  240  TGCTGAAAGATTCTACTACAGGCAATCTCCTCCACCTCCCTCCGGAAAACCTTGGTGGTG  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  TGCTGAAAGATTCTACTACAGGCAATCTCCTCCACCTCCCTCCGGAAAACCTTGGTGGTG  299

Query  300  GTTGTTGTAG  309
            ||||||||||
Sbjct  300  GTTGTTGTAG  309



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14326308465


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5