BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489454
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26090.1 | Symbols: | Plant self-incompatibility protein S1... 1445 0.0
> AT5G26090.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr5:9109026-9113235 REVERSE LENGTH=1206
Length=1206
Score = 1445 bits (782), Expect = 0.0
Identities = 894/949 (94%), Gaps = 4/949 (0%)
Strand=Plus/Plus
Query 1 CACGTCACCGTGGTCTCCTACGCCGGGAGGTCACATTTTGTCACAACGGAGCTGAAGATA 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 199 CACGTCACCGTGGTCTCCTACGCCGGGAGGTCACATTTCGTCACAACGGAGCTGAAAATA 258
Query 61 CGAAATGGAATGCAAGGCTTGAAACGTCCAGAGATCGTTTACCACTGTCATGCTATAAAT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 259 CGAAATGGAATGCAAGGCTTGAAACGTCCAGAGATCGTTTACCACTGTCAAGCTATTAAT 318
Query 121 AGTGGCCTTGATTATGGATGGCGACGAGCCAC-AAGGCCACCATTGGGCCATTCCTTCCA 179
|||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||
Sbjct 319 AGTGGCCTCGATTATGGATGGCGACGAGCC-CTAAGGCCACCATTCGGCCATTCCTTCCA 377
Query 180 TGTACTCTTGGAAGGCGGCGAAAAACTAGAGGAGGAGATTCACCGCTGCCATTTCCGGTC 239
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 378 TGTACTCTTGGAAGGCGGCCAAAAACTGGAGGAGGAGATTCACCGCTGCCATTTCCGGTC 437
Query 240 AGTGCTCGGTACAGCGGATGTCGATATCCGTATGACCGCGATTGATGCTGAGATTTGTAA 299
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AGTGCTTGGTACAGTAGATGTCGATATCCGTATGACCGCGATTGATGCTGAGATTTGTAA 497
Query 300 TTTTAAAAAGGCATGTGCGATTCATGAGGTTACACCGGAAGGGATAACATTTGATGGTAA 359
||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 498 TTTTAGAAAGGCATGTGCGGTTCATGAGGTTACACCGGAAGGGATAATGTTTGATGGTAA 557
Query 360 AGAATGGAATTTTGAGGAGAGGTATCCAAGGCTGATACCAAAGAAATACCTCGAAGCGAA 419
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 558 AGAATGGAATTTTGAGGAGCGGTATCCAAGGCTGATACCAAAGAAATACCTCGAAGCTAA 617
Query 420 GTGGAAACCTTGGCCACGACGCACCAACCGTAGCAGTGGGGGCCAGGGAAGCGGACGTCG 479
|||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 618 GTGGAAGCCTTGGCCACGACGCACCAGTCGTAGCAGTGGGGGCCAGGCCAGCGGACGTCG 677
Query 480 ACCCTCGGGAGACGTGGGTTTCAAGCTAATGATGAAGAACGAAATGTATGGCTTGAAACG 539
| |||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 678 ATCCTCAGGAGACGTGGGTTTCACGCTAATGATGAAGAACGAAATGTTTGGCTTGAAACG 737
Query 540 TCCATCGGTTCTCTACCGGTGCAAGTCGTCTGACAAATCCCTTCGGTGGCACATATCGAT 599
||||||||||||||||||||||||| | | |||||||||||||||||||||| |||||||
Sbjct 738 TCCATCGGTTCTCTACCGGTGCAAGGCTTATGACAAATCCCTTCGGTGGCACGTATCGAT 797
Query 600 TCCCCATG-CGGAATTTACATGGGATTTCGAAGTCCCGCCATTTGGAACCGGCGTGGTCA 658
|||| | | | |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 798 TCCC-ACGGCAGAATTTACATGGGATTTCGAAGTCCCACCATTTGGAACAGGCGTGGTCA 856
Query 659 TCCACCGTTGTGAATTCAAGTCAAGCCAAGGGACAGCGGAGGTTGAGATTAAGACGTTGT 718
|||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||
Sbjct 857 TCCACCGTTGTGAATTCAAGTCAAGCCAAGGGACAGCGGACGTCGAAATTAAGACATTGT 916
Query 719 CGATGACATCTACGTTGTGCGGAGGGCATTTGTGTAAATATATCATTAGGCCTAATGGTG 778
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 917 CGATGACATCTACGTTGTGCGGAGGGCATTTGTGTAAATATGTCATTAGGCCGAATGGTG 976
Query 779 TATACTTCGTTGGTTTTGAGACCTATTATCCGCACAATATCTTGTTAAGATTTCTTGAGT 838
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 977 TATACTTCGTTGGTTTTGAGACCTATTATCCGCACAATATTTTCTTAAGATTTCTTGAGT 1036
Query 839 TCGTGAGACCTGTTGACAAGCTTGTCGAGCCATGGAAGGCGTGGTCTCCACGGCAGCTAA 898
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1037 TCGTGAGGCCTGTTGACAAGCTTGTCGAGCCATGGAAGGCGTGGTCTCCACGACAGCTAA 1096
Query 899 AGGCTTTGCGGGAACGTACCAGCAACAGAACCAGGTCACACGATGACAA 947
|||||||||||||||| || | |||| | ||||||| |||||| |||||
Sbjct 1097 AGGCTTTGCGGGAACGCACTAACAACCGCACCAGGTTACACGAAGACAA 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5