BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489455

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26114.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   361    2e-99


> AT5G26114.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:9120688-9120960 
REVERSE LENGTH=273
Length=273

 Score =  361 bits (195),  Expect = 2e-99
 Identities = 236/256 (92%), Gaps = 2/256 (1%)
 Strand=Plus/Plus

Query  1    ATGGTCCTTAAACGTGCCGTTGAGGAGGATAAATCTGTGAGGAATAAGAAACTGAAGGCG  60
            |||||||| ||||||| |   ||||||||||||||||||||||| ||||||||||| || 
Sbjct  1    ATGGTCCTCAAACGTGACAAGGAGGAGGATAAATCTGTGAGGAAGAAGAAACTGAACGCA  60

Query  61   GAGAATTCGATTCTGATACGT-CCAATTATACTTGGAGAGAGATGTAGGGTTCTTGATGC  119
            || |||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct  61   GATAATTCGATTCTGGTAC-TCCCAATTATACTTGGAGAGAGATGTAGGGTTCTTGATGC  119

Query  120  GGAAGAAGGAGATGAAGAACATAGCCAAAGAATGCCAAAGAACCGAATATATCGTCCTAG  179
            |||||||||||||||||| || |||||||||||| || ||||| ||||||||||||||||
Sbjct  120  GGAAGAAGGAGATGAAGATCAAAGCCAAAGAATGGCAGAGAACAGAATATATCGTCCTAG  179

Query  180  ATCCATGAGTTCGATCTCGATTTCGAGAACTAACTCGAACATCGATATGAATGCAATTCC  239
            |||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct  180  ATCCATGAGTTCGATCTCGATTTCGAGAACCAAGTCGAACATCGATATGAATGCTATTCC  239

Query  240  CGTAGAAGTAACATCA  255
            ||||||||||||||||
Sbjct  240  CGTAGAAGTAACATCA  255



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11611850019


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5