BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489456
Length=2237
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26120.1 | Symbols: ATASD2, ASD2 | alpha-L-arabinofuranosida... 1951 0.0
> AT5G26120.1 | Symbols: ATASD2, ASD2 | alpha-L-arabinofuranosidase
2 | chr5:9121727-9125967 REVERSE LENGTH=2208
Length=2208
Score = 1951 bits (1056), Expect = 0.0
Identities = 1228/1312 (94%), Gaps = 8/1312 (1%)
Strand=Plus/Plus
Query 931 AAATGATCTTTTCCAAATGATGGTTGATCTAAAACCGC-GTTTCATCCGATTCCCGGGTG 989
|||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||
Sbjct 816 AAATGACCTTTTCCAAATGATGGTCGATCTAAAACCGCGGTTT-ATCCGATTCCCGGGTG 874
Query 990 GTTGTTTTGTGGAGGGTGAATGGTTAGGCAATGCATTCCGCTGGAAAGAAACCGTGGGAG 1049
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 875 GTTGTTTTGTGGAGGGTGATTGGTTAGGCAATGCATTCCGCTGGAAAGAAACCGTGAGAG 934
Query 1050 CTTGGGAAGAGAGACCTGGCCATTATGGCGATGTTTGGAAGTACTGGACTGATGATGGCC 1109
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 935 CTTGGGAAGAGAGACCTGGCCATTATGGTGATGTTTGGAAGTACTGGACTGATGATGGCC 994
Query 1110 TTGGTCACTTTGAATTCTTTCAACTTGCAGAAGACATTGGTGCAGCCCCAGTATGGGTGT 1169
|||| |||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 995 TTGGCCACTTTGAATTCTTTCAACTTGCAGAAGACCTTGGTGCATCCCCAATATGGGTGT 1054
Query 1170 TTAACAATGGGATCAGTCACAATGATCAAGTTGAAACAGAAAATGTCAAGCCTTTTGTTC 1229
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1055 TTAACAATGGGATCAGTCACAATGATCAAGTTGAAACAAAAAATGTCATGCCTTTTGTTC 1114
Query 1230 AAGAAGCGATTGACGGTATAGAGTTTGCTCGCGGAGATCCTCAGTCTACATGGGGATCGG 1289
||||||||||||||||||||||||||||||| |||||| || | ||||||||||||||||
Sbjct 1115 AAGAAGCGATTGACGGTATAGAGTTTGCTCGTGGAGATTCTAATTCTACATGGGGATCGG 1174
Query 1290 TTCGAGCTGCAATGGGACATCCAGAGCCTTTTGAACTGAAATATGTTGCGGTCGGGAATG 1349
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1175 TTCGAGCTGCAATGGGACATCCAGAGCCTTTTGAACTGAAATATGTTGCGGTTGGGAATG 1234
Query 1350 AAGATTGTTTTAAGAGTTACTACAGAGGAAACTATCTTGAGTTTTATGATGCTATCAAAA 1409
|||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 1235 AAGATTGTTTTAAGAGTTACTACAGAGGAAACTATCTTGAATTCTATAATGCTATCAAAA 1294
Query 1410 AAGCTTATCCAGACATCAAAATCATCTCCAACTGCGATGCATCGTTTAAGCCGCTCGATC 1469
||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1295 AAGCTTATCCAGATATTAAAATCATCTCCAACTGCGATGCATCGGCTAAACCGCTCGATC 1354
Query 1470 ACCCTGCTGACTACTTTGATTACCACATTTATACTCTTGCAAAG-GATTTGTTTTCCAGG 1528
|||| || || |||||||||||||||||||| |||||||| ||| || |||||||||| |
Sbjct 1355 ACCCGGCCGATTACTTTGATTACCACATTTACACTCTTGC-AAGAGACTTGTTTTCCAAG 1413
Query 1529 TCCCATGACTTTGACAATACACCGCGCAACGGTCCAAAGGCTTTTGTTAGCGAGTACGCT 1588
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1414 TCCCATGATTTTGACAATACACCGCGAAACGGTCCAAAGGCTTTTGTTAGCGAATACGCT 1473
Query 1589 GTAAACAAAACGGATGCTAATAATGGAAACCTTTTGGCCGCTCTTGGGGAAGCAGCCTTC 1648
||||||||| | |||||||| ||||| |||||||||||||||||||| |||||||| |||
Sbjct 1474 GTAAACAAAGCAGATGCTAAAAATGGCAACCTTTTGGCCGCTCTTGGTGAAGCAGCTTTC 1533
Query 1649 CTCCTTGGTTTGGAAAAGAACAGTGACATTGTAGGAATGGTTAGCTATGCACCTCTCTTT 1708
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1534 CTCCTTGGTTTGGAAAAGAACAGTGACATTGTAGAAATGGTTAGCTATGCACCTCTCTTT 1593
Query 1709 GTCAACACAAATGATAAAAGGTGGATCCCTGATGCAATAGTTTTTAACTCGTCTCATCTA 1768
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1594 GTCAACACAAACGATAGAAGGTGGATCCCTGATGCAATAGTTTTTAACTCGTCTCATCTA 1653
Query 1769 TATGGAACTCCTAGCTATTGGGTCCAACAGTTCTTCACCGAGTCAAGCGGAGCAACTCTT 1828
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1654 TATGGAACTCCTAGCTATTGGGTCCAACACTTCTTCACCGAGTCAAGCGGAGCAACTCTT 1713
Query 1829 CTCAATTCTACTCTTAAGGGAAACTCTTTTTCTATTGAAGCATCTGCTATCTCCTTCCAA 1888
||||||||||| ||||||||||| ||| |||| ||||||||||||| ||||| ||||||
Sbjct 1714 CTCAATTCTACACTTAAGGGAAAGACTTCTTCTGTTGAAGCATCTGCCATCTCTTTCCAA 1773
Query 1889 GCCAATGGCAAA-ACTTACATACAAATCAAGGCTGTAAACTTTGGAGAAGAATCAGTAAA 1947
||||||||||| | ||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1774 ACCAATGGCAAAGA-TTACATACAGATCAAGGCTGTAAACTTTGGAGAACAATCAGTAAA 1832
Query 1948 TCTAAAGGTAACGGTGACCGGATTGATCGCAAAATTTTATGGATCCAAGAAGAAAGTACT 2007
|||||||||| | ||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 1833 TCTAAAGGTAGCAGTGACAGGATTGATGGCAAAATTTTATGGATCCAAAAAGAAAGTACT 1892
Query 2008 TACATCTGCCAATGTGATGGATGAGAATTCTTTCTCAACCCCAGAGATGATTGTGCCGCA 2067
||||||||||| ||||||||||||||| ||||| |||| |||| | ||||||||||| ||
Sbjct 1893 TACATCTGCCAGTGTGATGGATGAGAACTCTTTTTCAAACCCAAATATGATTGTGCCACA 1952
Query 2068 AGAAAGCTTGCTAGAGATGACTGAGGAGGAGGACCTTATGTTTGTTCTCCCGCCGCACTC 2127
|||||| ||||| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1953 AGAAAGTTTGCTGGAGATGACTGAGCAGGAAGACCTTATGTTTGTTCTCCCGCCGCACTC 2012
Query 2128 GTTCTCCTCCTTCGATTTGTTGAAACAATCTGAAAATATCATCAAGATGCCAATAT--GA 2185
|||||| |||||||||||||||| | ||||||||||| |||||||||||||||||| ||
Sbjct 2013 GTTCTCTTCCTTCGATTTGTTGACAGAATCTGAAAATGTCATCAAGATGCCAATATCTGA 2072
Query 2186 TTCCTACAACAAAACTTCAACAATGTGAAGAGAAACATCATGTTGGAGACTT 2237
||| ||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2073 TTCATACAAGAAAACTTCAACAATGTGAAGAGAAACATCATCTTGGAGACTT 2124
Score = 1109 bits (600), Expect = 0.0
Identities = 751/821 (91%), Gaps = 21/821 (3%)
Strand=Plus/Plus
Query 1 ACTTTTAATCCTCGTTTCACTGCTCATTCGTGTCTTTCTTCTATCAAGGTTAATTACCTT 60
|||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 1 ACTTTTAATCCTAGTTTCACTGCTCATTCGTGTCTTTCTTCTATCAAGG-----T--CTT 53
Query 61 TCTCTGATTAGATCTGGTGACGATGGACATGGAGACTTCTTGGAGATTTCTCAAAAGTGT 120
|||||| ||| || |||||| ||||||||||| || |||||||||||||||| ||||||
Sbjct 54 TCTCTGGTTAAATTTGGTGATTATGGACATGGAAACATCTTGGAGATTTCTCAGAAGTGT 113
Query 121 TTGCATACTTTCCTTTCTCATTGGCG-CTTGTTCTGTCTACCAAAGCCTTTGTCTTGTCG 179
|||| ||||||| ||| || |||| | ||| |||||||||||||| |||||||||||| |
Sbjct 114 TTGCTTACTTTCATTTATCCTTGG-GTCTTTTTCTGTCTACCAAACCCTTTGTCTTGTTG 172
Query 180 ATGCTCAAGCAGACGCCATTGTAACATTGCAAGTAGATGCTTCTAACATGACAAGACGAC 239
| ||||||| |||||||||||||||| |||||||||||||||||||| ||||| | ||||
Sbjct 173 ACGCTCAAGAAGACGCCATTGTAACACTGCAAGTAGATGCTTCTAACGTGACACGGCGAC 232
Query 240 CAATTCCTGAAACTCTATTCGGAATCTTCTTTGAGGAAATAAATCATGCTGGAGCAGGTG 299
| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 233 CGATTCCCGAAACTCTATTTGGGATCTTCTTTGAGGAAATAAATCATGCTGGAGCAGGTG 292
Query 300 GACTATGGGCTGAACTTGTTAGCAACAGAGGATTTGAAGCTGGTGGACAAACCATTCCTT 359
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 293 GACTATGGGCTGAACTTGTTAGCAATAGAGGATTTGAAGCTGGTGGACAAATCATTCCTT 352
Query 360 CCAATATCTGGCCTTGGTCCATTATTGGAGATGAATCATCCATATATGTCGTTACAGACC 419
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 353 CCAATATCTGGCCTTGGTCCATTATTGGAGATGAATCATCCATTTATGTTGTTACAGACC 412
Query 420 GTTCTTCGTGTTTTGAGCGTAACAAGATTGCTCTTAAAATGGAAGTGCTTTGTGACAGCA 479
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 413 GTTCTTCGTGTTTTGAGCGTAACAAGATTGCTCTTAGAATGGAAGTCCTTTGTGACAGCA 472
Query 480 ATGGCAGTAGCAATTGTTGTCCATCAGGAGGAGTTGGGATTTATAACCCGGGTTATTGGG 539
| | | | |||| || | ||||||||| ||| |||||||||||||||| ||||
Sbjct 473 A---C--T--C--TTGT---CCGTTAGGAGGAGTCGGGGTTTATAACCCGGGTTACTGGG 520
Query 540 GCATGAACATTGAAGAAGCGAAGAAATACAAAGTGGTGTTCTATGTGCGTTCGACCGGAG 599
|||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| || |
Sbjct 521 GCATGAACATTGAAGAAGGGAAGAAATATAAAGTGGTGTTATATGTGCGTTCGACTGGGG 580
Query 600 ACATCGATGTGTCTGTGTCGTTTACAAGTTCGAATGGATCATTGACTCTTGCGTCAGAAA 659
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 581 ACATCGATGTGTCTGTGTCGTTTACAAGTTCTAATGGATCAGTGACTCTTGCGTCAGAAA 640
Query 660 ATATTATAGCTTTGGCTTCTGATGTTTCAAATTGGACTAAAAAGGAAATGCTTTTAGAAG 719
||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||
Sbjct 641 ATATTATAGCTTTGGCTTCTGATCTTTTAAATTGGACAAAAAAGGAAATGCTTTTAGAAG 700
Query 720 CAAATGGAACAGATAATGGTGCAAGACTTCAGTTTACAACAACCAAAAAAGGTTCAATTT 779
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 701 CAAATGGAACAGATAATGGTGCAAGACTTCAGTTTACAACTACCAAAAAAGGTTCAATTT 760
Query 780 GGTTTGACCAAGTCTCAGCCATGCCTATGGATACTTACAAG 820
||||||| |||||||||||||||||||||||||||||||||
Sbjct 761 GGTTTGATCAAGTCTCAGCCATGCCTATGGATACTTACAAG 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110993404995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5