BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489460
Length=3263
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26160.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2852 0.0
> AT5G26160.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G20610.1);
Has 197 Blast hits to 158 proteins in 44 species: Archae -
0; Bacteria - 14; Metazoa - 28; Fungi - 15; Plants - 117; Viruses
- 2; Other Eukaryotes - 21 (source: NCBI BLink). | chr5:9142865-9146525
FORWARD LENGTH=3364
Length=3364
Score = 2852 bits (1544), Expect = 0.0
Identities = 1842/1985 (93%), Gaps = 23/1985 (1%)
Strand=Plus/Plus
Query 1286 AAAACATTCAGTTGATGGAGCACCCAAGTCAACTTTCAGTAGCCAGGTAATTTCTGAGTC 1345
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 AAAACATTCAGTTGATGGAACACCCAAGTCAACTTTCAGTAGCCAGGTAATTTCTGAGTC 1431
Query 1346 ATCTGAGAGTAAATCTCCATCAGCCATGTATGATTCTACGA-AGAAAGAAAACTTTTTGG 1404
||||||||||||||||||||| || ||| ||||| ||| | ||||||||||||||||||
Sbjct 1432 ATCTGAGAGTAAATCTCCATCGGCAATGGATGATAGTAC-AGAGAAAGAAAACTTTTTGG 1490
Query 1405 AAGTGAAATCTACTTACAAAGCTGCCAAAATATCAACGAAGTCACTAAGCTTGGATGACA 1464
|||| ||||||| ||| ||||| ||||||||||||| || ||||||||||||||||||||
Sbjct 1491 AAGTTAAATCTAGTTATAAAGCCGCCAAAATATCAATGACGTCACTAAGCTTGGATGACA 1550
Query 1465 TTACTGAGTCTGTAGCTAATGATTTTCTAAACATGCTTGAACTTGAGGAATGTTCTTATG 1524
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1551 TTACTGAGTCTGTAGCTAATGATTTTCTAAACATGCTTGAACTTGAGGAGTGTTCTTATG 1610
Query 1525 TTTATACCTCAGATGGTGAACCTACATCTCCTCGTGAATCTCTGCTTCGAGAGTTTGAGA 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 TTTATACCTCAGATGGTGAACCTACATCTCCTCGTGAATCTCTGCTTCGAGAGTTTGAGA 1670
Query 1585 ATGAGGCTTTCGCTTCTAGAAACTTTCTCTTAGATTTAGATGGAGAAGCAGCAGATGTTT 1644
| || |||||||||||| |||||||||||||||||||| |||||||||||| | ||||||
Sbjct 1671 AGGAAGCTTTCGCTTCTGGAAACTTTCTCTTAGATTTAAATGGAGAAGCAGAATATGTTT 1730
Query 1645 CTGATACTGATGAGAAATCGAATGATTTCTCGTTCTCTGCAAGTTCTTTGGGTGTTGGAG 1704
|||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| |
Sbjct 1731 CTGATATTGATGAGAAATCGAATGATTTCTCATTCTCTGCAAGTTCTTTGGATGTTGGGG 1790
Query 1705 AAAGCAAGCGTGAGGGAAAATCTCAGCTGTTAATAGACAGAAGGAAAG-CCAAGGTATTT 1763
||| |||||||||||||||||||||||||||||||||||| || |||| |||||||| ||
Sbjct 1791 AAAACAAGCGTGAGGGAAAATCTCAGCTGTTAATAGACAGGAG-AAAGGCCAAGGTACTT 1849
Query 1764 GAAGACTTGGAAACTGAAAATTTATTCCGAGAGTGGGAATTTAATGATAA-ATGTTTTGA 1822
||||||||||||||||||| |||||| |||||||| || ||| |||| || | |||||||
Sbjct 1850 GAAGACTTGGAAACTGAAACTTTATTGCGAGAGTGTGATTTTGATGACAACA-GTTTTGA 1908
Query 1823 GAACTCTTTTTGTGCTTGCTCTGATGGGTTTGGAAGTCCAATAGAGCTTCCAGTTGACAA 1882
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 TAACTCTTTATGTGTTTGCTCTGATGGGTTTGGAAGTCCAATAGAGCTTCCAGTTGACAA 1968
Query 1883 GGGAGTAGATTTGCTTCCACTTGGAGATAATATTGGTCCTTCTGTTTGGACAAAAGGGGG 1942
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 GGGATTAGATTTGCTTCCACTTGGAGATAATATTGGTCCTTCTGTTTGGACAAAAGGGGG 2028
Query 1943 AGGGTGTATCCGGTCCATAAATCCTTTATTGTTCAGAGAGTGTAAGGATGCATCACATCT 2002
||||||||| |||||||| |||| |||| |||||||||||| |||||| |||||||| ||
Sbjct 2029 AGGGTGTATTCGGTCCATGAATCATTTACTGTTCAGAGAGTCTAAGGAGGCATCACAACT 2088
Query 2003 AATCATGCAAGTTTCAGTCCCGGTGGTGCTAGTATCAGAATTAGGTTCTGATATCCTTGA 2062
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2089 GATCATGCAAGTTTCAGTCCCGGTGGTGCTAGTATCAGAATTAGGTTCTGATATCCTTGA 2148
Query 2063 AATACTCCAAAGTTTGGCAGCTTCTGGAATTAAAGGACTTTGCTCTGAAGTTAATGCATT 2122
|||||| |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2149 AATACTACAAATTTTTGCAGCTTCTGGAATTGAAGGACTTTGCTCTGAAGTTAATGCATT 2208
Query 2123 AATGCCTTTGGAAGATATTATGGGGAAGACGATACATGAAGTTGTCGATGGCGCAAAATT 2182
||| |||||||||||||||||||||||||| ||||||||||||||||||| | |||||||
Sbjct 2209 AATTCCTTTGGAAGATATTATGGGGAAGACAATACATGAAGTTGTCGATGTCACAAAATT 2268
Query 2183 TAAGAGAACTGGACATGATTGCTCTGACAAGAGTAGAGGTGTCGTGGTTCAGAAACCATC 2242
||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| |
Sbjct 2269 TAAGAGAACTGGACAGGATTGTTCTGACAAGAGTAAAGGTGTCGTGGTTCAGAAACCACC 2328
Query 2243 AGGACAACTGGATTTGT-TTCCTTCAAATGAAGAATTTGGGGGCTTTGGATCCAATATGT 2301
|||||| ||| |||||| ||| |||||||||||||||||| ||||| |||||
Sbjct 2329 AGGACAGCTGCATTTGTGTTC-TTCAAATGAAGAATTTGG---------ATCCAGTATGT 2378
Query 2302 GTCCAAGTTATGTACCTCTTGAAGATATCACTTCCTTAGCTATTGATGAGATATACCTTC 2361
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 2379 GTCCAAGTAATGTACCTCTTGAAGATGTCACTTCCTTAGCTATTGATGAGATATACATTC 2438
Query 2362 TCTCAATAGAAGGATTAAAGATTCAATGCAGTATGTCAGACCAAGATCCACAATCAGGAA 2421
|||| |||||||||||||||||||||||||| |||||||| |||||||||| ||||||||
Sbjct 2439 TCTCGATAGAAGGATTAAAGATTCAATGCAGCATGTCAGATCAAGATCCACCATCAGGAA 2498
Query 2422 TTGCACCAAAACCCATGGATCAGTCTGATGCTCTAGAGTTGATGA-GTTTTTCCTCAACG 2480
|||||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||
Sbjct 2499 TTGCACCAAAACCCATGGATCAGTCTGACGCTCTAGAGTTGAT-ACGTTTTTCCTTAACC 2557
Query 2481 TTGGATGAGTGGTTAAGGCTTGACCATGGAATGCTAGACAACAAAGATCAAGATC-AGGC 2539
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| || |
Sbjct 2558 TTGGATGAGTGGTTAAGGCTTGACCAGGGAATGCTAGAAAACAAAGATCAAGATTTAG-C 2616
Query 2540 TTCTAGTGGAAAGGGTCATACATTAAGGAACAAGTTGACACTTGCTCTTCAAGTATTACT 2599
||||| ||||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 2617 TTCTAATGGAAAGGGTCATACGTTAAGGAACAAATTGACACTTGCTCTTCAAGTGTTACT 2676
Query 2600 TAGAGATCCATTCGTCAATAATGAACCTGTTGGTGCATCTATGCTTGCTCTGATCCAAGT 2659
| ||||||||| | | |||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 2677 TCGAGATCCATCCCTAAATAATGAACCTATTGGTGCATCTATGCTTGCTCTGATTCAAGT 2736
Query 2660 TGAAAGGTCTTTGGATTCCTCAAATTCATCTGTGTGTAGTTTGGCTCAAGAAGGAAGAAA 2719
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 2737 TGAAAGGTCTTTGGATTCCCCAAATTCATCTTTATGTAGTTTGGCTCAAGAAGGAAGAAA 2796
Query 2720 TAAGGACTCCTTTGGATATGATACGCAGTTGTGGAGAATCACTGAAATTGCTCTAACGGG 2779
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 2797 TAAGGAATCCTTTGGATATGATACGCAGTTGTGGAGAATCACTGAAATTGGTCTAGCGGG 2856
Query 2780 TTTGAAAATTGAGCCTGGTGTAGACCATCCATGGTGTACGAAATCACAGCAGCAGTCTGG 2839
|||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 2857 TTTGAAAATTGAGCCTGGTGCAGACCATCCATGGTGTACGAAATCACAACAACAGTCTGG 2916
Query 2840 CA-CCCGCTGGTTACTTGCCAGTGGTGCTGATAAAACCATCAAGTGTCAAGCTTCAGAGT 2898
| |||||||||||||||||| |||| |||| |||||||| |||||||||||||||||||
Sbjct 2917 -ATCCCGCTGGTTACTTGCCAATGGTACTGACAAAACCATAAAGTGTCAAGCTTCAGAGT 2975
Query 2899 CAAAGGCGATCATTGTATCAAACCCACAAGCAACTAGAAAGAGGTTGGACACATTGTGGA 2958
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2976 CAAAGGTGATCATTGTATCAAACGTGCAAGCAACTAGAAAGAGGTTGGACACATTGTGGA 3035
Query 2959 GTATAACATCTGATAGGCACCATCAAGAAGGTGATTTGAGTGGCTCTGCTGCCTCTGTTC 3018
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3036 GTATAATATCTGATAGGCACCATCAAGAAGGTGATTTGAGTAACTCTGCTGCCTCTGTTC 3095
Query 3019 CATTTACAAGAAATTTAGACGTGATCTTTTCAAATGAAGTAACAGAAAGATCGTGATAGT 3078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3096 CATTTACAAGAAATTTAGACGTGATCTTTTCAAATGAAGTAACAGAAAGATCGTGATAGT 3155
Query 3079 AGCATTTCCATTGGCATATTATTATACTTCTTTCTTTCCACTCTCTACTGAAGAACTAGT 3138
||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||| |||
Sbjct 3156 AGCATTTCCATCGGCATATTATTATACTTCTTTATTTCCACTCTATGCTGAAGAACCAGT 3215
Query 3139 CATTTTGATGTGAAAGCAGTCTTGTTCACGGTGGAAAATGCTTCGCTGACTCCCCTTTCT 3198
|||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||
Sbjct 3216 CATTTTGATGTGAAAGCAGTCTTGTTCATGGTGGAAAATGCTTCGCTGGCTCCTCTTTAA 3275
Query 3199 CTAGTTGAAAAAAGTAGATGCAGATGTCATCAGTTTTATCAATGTGTACGAGAAATATAA 3258
||| |||||||||||||||| | |||||||| | |||||||| ||||| |||||||| ||
Sbjct 3276 CTACTTGAAAAAAGTAGATGTATATGTCATCGGATTTATCAAGGTGTATGAGAAATAGAA 3335
Query 3259 TTTTT 3263
|||||
Sbjct 3336 TTTTT 3340
Score = 1733 bits (938), Expect = 0.0
Identities = 1199/1318 (91%), Gaps = 46/1318 (3%)
Strand=Plus/Plus
Query 1 AATCAAATGAAACCCTACCGGCGAAACCAAGTATTAACTTCACTCACGCTTTTCCCATGA 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 48 AATCAAATGAAACCCTACCGGCGAAACCAAGTATTAAATTCACTCACGCTTTTCCCGTGA 107
Query 61 AGTCATCTTCCAAAGATTCTTCAAAAG-TTTTCTATTTTTAGAATCCCCAGAAACTCTTT 119
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 108 AGTCATCTTCCAAAGAATCTTCAAAAGTTTTTCTATTTTTAGAATCCCCAGAAACTCTTT 167
Query 120 CAAAATCCTCTGAAACCGCATTG-T-ATGACTTGATCAAAGAGAGTGTAAGCAATGTCTG 177
||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 168 CAAAATCCTTTGAAACCGCATTGTTGATGACTTGATCAAAGAGAGTGTAAGCAATGTCTG 227
Query 178 TGAATGATAGAGAGGAGTCAT---C---------TAATGGGCAG-TTGTTGAAG-GACAT 223
|||||||||||||||| |||| | |||||| ||| || ||| || |||||
Sbjct 228 TGAATGATAGAGAGGATTCATCAGCAGATTTATATAATGGACAGCTT-TTG-AGAGACAT 285
Query 224 TAAGGAGGTAAGTAAAGCTCTTTACTTGAACAACAATGGACCTCAAAGACCGGTGCTTTC 283
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 286 TAAGGAGGTAAGTAAAGCTCTTTACTTG-AC--CAATGGACCTCAAAGACCGGTGCTTTC 342
Query 284 GTTGTCTCCTTCTGTTCGATCTAAATCTGTTTCGAGAACTACAGAGATTGGGGTAGTATT 343
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 343 GTTGTCTCCTCCTGTTCGATCTCAATCTGTTTCGAGAACTACAGAGATTGGGTTAGTATT 402
Query 344 GTCAAATAAGAAGAAGAAATTGTTGGTACCATGGGATTGGAAGAAGCCTTTGAAAGCTAT 403
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||
Sbjct 403 GTCAAATAAGAAGAAGAAATCGTTGGTACCATGGAATTGGAAGAAGCCTTTGAATGCTAT 462
Query 404 AGCTCATTTTGGGCAGCGTAGGTTTGATGTTTGTTTTCTTCTCCATGTTCATTCCATTGA 463
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 463 AGCTCATTTTGGGCAGCGTAGGTTTGATGTTTGTTTTCTACTCCATGTTCATTCCATTGA 522
Query 464 AGGGTTGCCTTTGAATTTGGATGGTACTAAGTTGGTTGTGCAGTGGAAGAGGAAGGATGA 523
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 523 AGGGTTGCCTTTGAATTTGGATGGTACTAAGTTAGTTGTGCAGTGGAAGAGGAAAGATGA 582
Query 524 AGAAATGACTACTCAACCTTCCAAGGTTTTACAAGGAACTGCTGAGTTTGAAGAGACCTT 583
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 583 AGTGATGACTACTCAACCTTCCAAGGTTTTGCAAGGAACTGCTGAGTTTGAAGAGACCTT 642
Query 584 AACGCATAGATGTTCGGTATACGGAAGCAAACATGGGCCTCATCGTTCGGCAAAATATCA 643
|||||||||||||||||||||||| || |||||||||||||||||||| ||||| |||||
Sbjct 643 AACGCATAGATGTTCGGTATACGGTAGTAAACATGGGCCTCATCGTTCTGCAAAGTATCA 702
Query 644 AGTGAAGCtttttttGGTCTATGTCTCTCCTGTTGATGCTCCATGGCTTGT-TCTAGGGA 702
|||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |
Sbjct 703 AGTGAAGCTTTTTTTGATCTATGTCTCTCCTGTTGATGCTCCATGGCTTGTAT-TAGGTA 761
Query 703 AGCATTGGGTTGAT-TTCACCAAG-ATATTACCGTTGTCTCTGGAGGAACTGGAAGGTAC 760
|||||||| ||||| || || ||| ||||| |||||||||||||||||| ||||||||||
Sbjct 762 AGCATTGGATTGATCTT-AC-AAGGATATTGCCGTTGTCTCTGGAGGAAATGGAAGGTAC 819
Query 761 AAGAAGCACGAGAAAGTGGAACACGAGCTTCAAATTATCAGGCCTGGCGGAGTCTGCAGT 820
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 820 AAGAAGCACGAGAAAGTGGAACACGAGCTTCAAATTATCTGGCCTGGCGGAGTCTGCAGT 879
Query 821 TTTGAATCTTAGTTTTGATTACTCGGTTGTCAGCAGTTCAGTCTGTGACTCAACAAGTGA 880
||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| |
Sbjct 880 GTTGAATCTTAGTTTTGATTACTCAGTTGTCACCAGTTCAGTCTGTGACTCTACAAGTAA 939
Query 881 GAAA-GTGATGCTGAAGCGGGTTGGTAGTGTTCCAAGTATGGACCATAGATCGTC-ATCT 938
||| |||||||||| |||||||||||||||||||||||||||||||||||| || | |
Sbjct 940 -AAATGTGATGCTGAGGCGGGTTGGTAGTGTTCCAAGTATGGACCATAGATC-TCCACCG 997
Query 939 CTTGATGATGGAAAGGTCATCAATCAAGTCTCGCCGAGTCTGAGTTTGGATCTTTCCCAG 998
||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||||||
Sbjct 998 CTTGATGATGGAAAGGTTGTCAATGAAGTCTCCCCGAGTCTGAGTTTGAATCTTTCCCAG 1057
Query 999 TCAATAGATTTTCTCTATGAGAAACTTAGCGAACAAAACCCACAAAGATCAACCGAAACT 1058
||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||
Sbjct 1058 TCAATAGATTTTCTCTATGAGAAACTTGGCGAACAAAACCCACAAAGATCAACAGGAACT 1117
Query 1059 G-G-TATCAAGTATGAACATCTGGATGACT--CTGGCGA-CA-CTGATTTTGCTTTTACT 1112
| | || || || | | |||| |||| | | | || |||||| || | | |
Sbjct 1118 GAGGTAG-AACTAGGT---T-TGGA-GACTGACAAACAAGCAGCTGATTCTGATGACAGT 1171
Query 1113 GGACAAGGAGTAGAGATGTTACAGCAAGAAAGATCAAGGCTGGAAGAAACCACCAATCCA 1172
||| |||||||||||| ||| |||||||||||||| |||||||||||| || |||||
Sbjct 1172 GGAAAAGGAGTAGAGACGTTTCAGCAAGAAAGATCCGGGCTGGAAGAAAGCAATGATCCA 1231
Query 1173 AATACGGAATCCTCGAGAATTGAAATTATTGATGTCCATGAGATACTTAAAGATGAAGAT 1232
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 AATACAGAGTCCTCGAGAATTGAAATTATTGATGTCCATGAGATACTTAAAGATGAAGAT 1291
Query 1233 GAATCCTTTTTCGAAGACACCCT-TTTTATTGATCACTTATCAGTGGCCGCACTAAAA 1289
|||||| ||||||| || ||| | |||||||||||| |||||||||||||||||||||
Sbjct 1292 GAATCCGTTTTCGAGGAAACC-TATTTTATTGATCAGTTATCAGTGGCCGCACTAAAA 1348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 162340227548
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5