BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489466
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26230.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1413 0.0
> AT5G26230.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:9173517-9174542
REVERSE LENGTH=1026
Length=1026
Score = 1413 bits (765), Expect = 0.0
Identities = 946/1030 (92%), Gaps = 26/1030 (3%)
Strand=Plus/Plus
Query 1 ATGAAACGTCAACCACCACGTACACGTAACTCACCACCGCAATCTCACTCATCTCCGTCG 60
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGACGTCAACCACCACGTCCACGTAACTCACCACCGCAATCTCACTCATCTCCGTCG 60
Query 61 TCATCTTCATCGGAATTCGAATTCAACATCTCAATCTCGCCGCGAAAAGCTTCTTCTTCT 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 TCATCTTCATCGGAATTCGAATTTAACATCTCAATCTCGCCGCGAAAAGCTTCTTCTTCG 120
Query 121 CTTTGTCCTGCTGATGAACTCTTCTACAAAGGCCAGCTTCTTCCACTTCAGctctctcct 180
|||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 121 CTTTGTCCCGCCGATGAACTCTTTTACAAAGGCCAGCTTCTTCCTCTTCAGCTCTCTCCT 180
Query 181 cgtctctctctcgtccgtacactctg-ttcttct--t-cttcctcAGAGTACACTTCATC 236
||||||||||| ||||||||||| || ||||||| | |||||||||| |||||||| ||
Sbjct 181 CGTCTCTCTCTAGTCCGTACACT-TGGTTCTTCTACTTCTTCCTCAGACTACACTTCTTC 239
Query 237 TTCGTCCTCCTCCGCCGCAACCTCCGCCGCACGTGACTCCACTGAATCTAACTCCTCCAC 296
|| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTCTTCCTCCTCCGTCGCAACGTCCGCCGCACGTGACTCCACTGAATCTAACTCCTCCAC 299
Query 297 TGACTCCACCGCTTCTTTCCCTCTCCTCCACCCTCCTCCGCTTGATTGTTGTGACTCTTA 356
||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 TGATTCCACAGCTTCTTTCCCTCTCCTTCACCCTCCTCCGCTTGATTGTTGTGACTCTTC 359
Query 357 TCGTCCTAGTTCTGTAACTGACGATGAAGATTTTTTCTTTAAACCTCCAAAGAACAAATC 416
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 TCGTCCTAGCTCTGTAACTGACGATGAAGATTTCTTCTTTAAACCTCCAAAGAACAAATC 419
Query 417 TTTAAGTAGTGGTTTCTCTCTCTCTAGATTCTCCTCTGTTTTCAAGAAAGACCCCAAAAC 476
|| |||| |||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 420 TTCAAGTGGTGGTTTCTCACTTTCTAGATTCTCCTCTGTTTTCAAGAAAGATCCCAAAAC 479
Query 477 CAATCTCCACCGCCActcctcctcctcctcctccGC--C----GC---AGCTCCGTCGTC 527
||||||||||| ||||||||||||||| ||| |||| | || ||||||||||||
Sbjct 480 CAATCTCCACCACCACTCCTCCTCCTCTTCCACCGCAACAACCGCCGCAGCTCCGTCGTC 539
Query 528 GGTTAAGAGAATGAGCTCAACAGCGAAAGAAGTTATACGCAAATATATGAAAAAAGTCAA 587
||| |||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 540 GGTGAAGAGAATGAGCTCAACAGCTAAAGAAGTAATACGGAAATACATGAAAAAAGTCAA 599
Query 588 ACCTTTATACGACAAGTTATCTCAAAAACAGAGCTCCACTATAAAAACAGAGTCGTCATT 647
||| |||||||| || ||||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 600 ACCATTATACGAAAAATTATCTCCAAAACAGAGCTCCAATATAAAAACAGAGTCATCATC 659
Query 648 ATCTCTCAAAGATTCCGGCAACAACATACGTAAAACCACCACCACGACAACCACCGTCAC 707
|||||||||||||||||| |||||||| ||| ||||||||| | ||||||||||||
Sbjct 660 ATCTCTCAAAGATTCCGGTAACAACATCCGTGGGACCACCACC--GT-AACCACCGTCAC 716
Query 708 AACCGCTCCAACCGTTGTCTCCTCCGGTAATGGTTTATCGATCTCTTTCTCCGGAAACCT 767
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 717 CGCCGCTCCAACCGTTGTCTCCTCCGGTGGTGGTTTATCAATCTCTTTCTCCGGAAACCT 776
Query 768 AATGAAATACACAAAACGAGGACGATGCGCGGCGAGTTGTCCATCGTCGATGAGGTCATC 827
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AATGAAATACACAAAACGTGGACGATGCGCGGCGAGTTGTCCATCGTCGATGAGGTCATC 836
Query 828 TCCGAATCACTCCGGCGTACTGACACGTGGCGGTTTACCGGGTCATCAAGG-AG---C-- 881
||||||||||||||| |||||||||||||||||||| |||| ||||||||| || |
Sbjct 837 TCCGAATCACTCCGGTGTACTGACACGTGGCGGTTTTCCGGTTCATCAAGGTAGTTGCAG 896
Query 882 TAGCAGCAG---CAACAATAACAGTGTGTCTTCTTCAATGGAAGAGTTACAAAGTGCTAT 938
||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 897 TAGCAGCAGTAGCAACAACAACAGTGTGTCATCTTCAATGGAAGAGTTACAAAGTGCTAT 956
Query 939 TCAAGGAGCTATTGCTCATTGCAAGAACTCAATGTTACAGAAGAATTTGGTTAGTAGTCT 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TCAAGGAGCTATTGCTCATTGCAAGAACTCAATGTTACAGAAGAATTTGGTTAGTAGTCT 1016
Query 999 CGAGATCTAG 1008
||||||||||
Sbjct 1017 CGAGATCTAG 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5