BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489473
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26330.1 | Symbols: | Cupredoxin superfamily protein | chr5... 918 0.0
> AT5G26330.1 | Symbols: | Cupredoxin superfamily protein | chr5:9241546-9242713
REVERSE LENGTH=710
Length=710
Score = 918 bits (497), Expect = 0.0
Identities = 604/655 (92%), Gaps = 9/655 (1%)
Strand=Plus/Plus
Query 1 TAAAGGAGAAAACCTTGTGGGGCTCTTCACCAaagaagaagaagaagagtgtgtgagaga 60
||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||
Sbjct 5 TAAAGGAGAAAACCTTGTGGGGCTCTTTACCAAAGAAGAAGAAGAAGCGTGTGTCAGAGA 64
Query 61 gagagTTAGTTGACTGATGGCGGCGAGGATAGTGGCGGCTTTGGCGTGTATGGTGGTGAT 120
| |||| |||||| |||||| || | |||||||||||||| |||||||| ||||||||
Sbjct 65 -A-AGTTTGTTGACCGATGGCAGCCATTATAGTGGCGGCTTTAGCGTGTATCGTGGTGAT 122
Query 121 GCTACAG-CTGAGTGAAGCGACGGTGTACAAAGTTGGTGACTCAGCAGGCTGGACAACCA 179
||||| | |||||||||||| | ||||||||||| || ||||||||||| ||||||||||
Sbjct 123 GCTAC-GACTGAGTGAAGCGGCCGTGTACAAAGTCGGCGACTCAGCAGGATGGACAACCA 181
Query 180 TAGCTAACGTAGACTACAAGCTATGGGCTTCTACCAAAACTTTCCACATTGGTGATACTG 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TAGCCAACGTAGACTACAAGCTATGGGCTTCTACCAAAACTTTCCACATTGGTGATACTG 241
Query 240 TCTTGTTCGAATACAACCCACAATTCCACAACGTAATGAGAGTGACGCACCCAATGTACA 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 242 TCTTGTTCGAATACAACCCACAATTCCACAACGTAATGAGAGTGACGCACCCAATGTATA 301
Query 300 GAAGTTGCAACACCTCAAAGCCAATCTCCACGTTCACTACCGGCAACGACTCAATCACAC 359
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 302 GAAGTTGCAACACCTCAAAGCCAATCTCTACTTTCACCACCGGCAACGACTCAATCACAC 361
Query 360 TCACCAACCACGGCCACCATTTCTTCTTTTGCGGCGTTCCCGGCCATTGTCTTGCCGGTC 419
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 362 TCACCAACCACGGCCACCATTTCTTCTTTTGCGGCGTTCCTGGCCATTGCCTCGCCGGTC 421
Query 420 AGAAGCTTGAcct-caacgtcctcctccctgcctcctccacgccactctctgatccacca 478
||||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 422 AGAAGCTCGACCTTCA-CGTCCTTCTCCCTGCCTCCTCCACGCCACTCTCTGATCCACCA 480
Query 479 acttcctcctcctct-c-c-tccaTCGACTACTATTCCTGCAGCCGGAGTCCCCGGCCCT 535
||||||||||||||| | | ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 481 ACTTCCTCCTCCTCTTCTCCTCCCTCGACTACTATTCCTGCAGCCGGAGTCCCTGGCCCT 540
Query 536 TCTCCTAGCCTTGCTGCTTCTCTATCGAGCGTGACAACAGCTCAAATCGTGGCTGTGGTG 595
||||||||||||||||||||||| |||| || || |||||||||||||| ||||||
Sbjct 541 TCTCCTAGCCTTGCTGCTTCTCTCCCGAGTATGGTGACGGCTCAAATCGTGGCCGTGGTG 600
Query 596 GTTCTCCTAGTCTCTTTGGCCTTTACAGATTTTGCTTCTTAATTAGGATTATATA 650
||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 601 ACTCTCCTAGTCTCTTTGGCCTTTACAAATTTTGCTTCTTAACTAGGATTACATA 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32601961403
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5