BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489475
Length=2055
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26360.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 3240 0.0
> AT5G26360.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr5:9255053-9258991 REVERSE LENGTH=2276
Length=2276
Score = 3240 bits (1754), Expect = 0.0
Identities = 1975/2078 (95%), Gaps = 29/2078 (1%)
Strand=Plus/Plus
Query 1 ATGCACGCACCGGTTCTCGTTCTGAGCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 ATGCACGCACCGGTACTCGTTCTGAGCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTT 160
Query 61 CATCATGGTAATATCCAAGCTTCCAAGGCTGTGGCTGATATCATTCGTACAACATTGGGT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 161 CATCATGGTAATATCCAAGCTTCCAAGGCTGTTGCTGATATCATTCGTACAACATTGGGT 220
Query 121 CCTCGTTCTATGTTGAAGATGCTTCTTGATGCTAGTGGAGGGATTGTTGTTACTAATGAT 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 221 CCTCGTTCTATGTTGAAGATGCTTCTTGATGCTGGTGGAGGGATTGTTGTTACTAATGAT 280
Query 181 GGGAATGCTATTCTTCGTGAGCTAGATGTTGCTCATCCTGCTGCTAAGTCAATGATTGAG 240
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 281 GGGAATGCTATTCTTCGTGAGCTAGATGTCGCTCATCCTGCAGCTAAGTCAATGATTGAG 340
Query 241 TTGAGCCGTACACAAGACGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAGCT 300
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TTGAGCCGTACGCAAGATGAAGAAGTTGGTGATGGGACAACGTCTGTTATTGTTCTAGCT 400
Query 301 GGAGAAATGCTTCATGTTGCAGAAGCATTTATTGAGAAGAATTACCACCCCACAGTCATA 360
|| ||||||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 401 GGTGAAATGCTTCACGTTGCAGAAGCGTTTCTTGAGAAGAATTACCATCCCACAGTCATA 460
Query 361 TGCCGAGCTTACATTAAGGCTCTCGAAGATTCAATTGCTGTTCTTGACAAAATTGCTATG 420
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 461 TGCCGAGCTTACATCAAGGCTCTCGAAGATTCTATTGCTGTTCTTGACAAAATTGCTATG 520
Query 421 TCAATTGATATCAATGACCGTTCATC-AGTGCTAGGATTAGTCAAGAGCTGCATAGGGAC 479
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 521 TCAATTGATATCAATGACCGTTCA-CAAGTGCTAGGATTAGTCAAGAGCTGCATAGGGAC 579
Query 480 AAAGTTCACTAGCCAATTTGGAGATCTAATTGCTGATTTGGCTATTGATGCCACTACTAC 539
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 580 AAAGTTCACTAGCCAATTTGGAGATCTTATTGCGGATTTGGCTATTGATGCCACTACTAC 639
Query 540 TGTTGGTGTTGATCTTGGGCAAGGTTTGAGGGAGGTAGACATTAAAAAGTACATCAAGGT 599
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TGTTGGTGTTGATCTTGGACAAGGTTTGAGGGAGGTAGACATTAAAAAGTACATCAAGGT 699
Query 600 TGAGAAGGTTCCTGGTGGTCAGTTTGAGGACTCGGAGGTTCTTAAAGGAGTTATGTTTAA 659
|||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 700 TGAGAAAGTTCCTGGTGGTCAGTTCGAGGACTCTGAGGTTCTTAAAGGAGTTATGTTTAA 759
Query 660 CAAAGATGTCGTTGCTCCTGGTAAAATGAAAAGAAAGATTGTCAACCCACGGATTATTCT 719
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 CAAAGATGTTGTTGCTCCTGGTAAAATGAAAAGAAAGATTGTCAACCCACGGATTATTCT 819
Query 720 TCTTGACTGTCCCCTTGAGTACAAGAAAGGTGAAAATCAAACCAATGCTGAGTTGGTCAG 779
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 820 TCTTGACTGTCCTCTTGAGTACAAGAAAGGTGAAAATCAAACCAATGCTGAGTTGGTTAG 879
Query 780 AGAAGAGGACTGGGAAGTGTTGTTGAAGTTGGAAGAGGAATACATTGAGAACATTTGCGT 839
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 880 AGAAGAGGACTGGGAAGTGTTGTTGAAGTTGGAAGAGGAATATATCGAGAACATTTGCGT 939
Query 840 CCAAATACTAAAGTTCAAACCTGATTTAGTTATTACAGAAAAGGGTCTTAGTGATTTGGC 899
||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| |||||
Sbjct 940 TCAAATACTAAAGTTCAAGCCTGATTTGGTTATCACAGAGAAGGGTCTTAGTGACTTGGC 999
Query 900 CTGTCACTATTTCAGTAAAGCTGGGGTTAGTGCAATCCGTAGGTTGAGAAAAACTGACAA 959
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1000 CTGTCACTATTTCAGTAAAGCTGGGGTAAGTGCAATCCGAAGGTTGAGAAAAACTGACAA 1059
Query 960 CAACAGAATCGCCAAGGCTTGTGGAGCAGTGATTGTGAACAGGCCCGACGAACTGCAGGA 1019
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1060 CAACAGAATCGCCAAGGCTTGTGGAGCAGTAATTGTGAACAGGCCCGACGAACTGCAGGA 1119
Query 1020 GTCTGATATCGGTACTGGGGCTGGTTTGTTTGAGGTCAAGAAAATAGGAGATGATTTCTT 1079
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1120 GTCTGATATCGGTACTGGGGCTGGCTTGTTTGAGGTCAAGAAAATTGGAGATGATTTCTT 1179
Query 1080 TTCTTTCATTGTTGATTGCAAAGAACCCAAAGCCTGTACCGTACTCTTAAGGGGACCAAG 1139
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1180 TTCTTTCATTGTTGATTGCAAAGAACCCAAAGCCTGTACTGTACTCTTAAGGGGACCAAG 1239
Query 1140 TAAAGATTTCATCAATGAAGTGGAAAGAAATTTACAGGATGCCATGTCTGTTGCAAGAAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 TAAAGATTTCATCAATGAAGTGGAAAGAAATTTACAGGATGCCATGTCTGTTGCAAGAAA 1299
Query 1200 CATTATCAAAAACCCAAAGCTCGTCCCTGGTGGAGGAGCCACAGAGTTAACTGTTTCTGC 1259
||||||||||||||||||||| || ||||||||||||||||||||| |||| ||||||||
Sbjct 1300 CATTATCAAAAACCCAAAGCTAGTTCCTGGTGGAGGAGCCACAGAGCTAACCGTTTCTGC 1359
Query 1260 CACATTAAAACAGAAGAGTGCAACAATCGAAGGCATAGAAAAGTGGCCTTATGAAGCAGC 1319
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1360 CACATTAAAACAGAAGAGTGCAACAATTGAAGGCATAGAAAAGTGGCCTTATGAAGCAGC 1419
Query 1320 TGCCATTGCTTTCGAGGCTATTCCACGTACCCTGGCTCAGAACTGTGGGGTTAACGTGAT 1379
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1420 TGCCATTGCTTTCGAGGCTATTCCACGTACCCTGGCTCAAAACTGTGGGGTTAACGTGAT 1479
Query 1380 CCGTACTATGACTGCATTGCAAGGGAAGCACGCAAATGGTGAAAACGCATGGACTGGTAT 1439
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1480 CCGTACTATGACTGCATTGCAAGGGAAGCATGCAAATGGTGAAAACGCATGGACTGGTAT 1539
Query 1440 TGACGGGAACACTGGTGCAATAGCTGATATGAAAGAGAGCAAGATATGGGATTCTTACAA 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1540 TGACGGGAACACTGGTGCAATAGCTGATATGAAAGAGAGCAAGATATGGGATTCGTACAA 1599
Query 1500 TGTGAAGGCGCAAACTTTCAAGACGGCGATAGAAGCTGCATGTATGCTTCTAAGAATCGA 1559
||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||
Sbjct 1600 TGTGAAGGCGCAAACTTTCAAGACGGCTATAGAAGCAGCGTGTATGCTTCTAAGGATCGA 1659
Query 1560 TGATATAGTGAGTGGAATCAAGAAGAAGCAAGCTCCTGGATCTGGACCTTCAAAGCCTAC 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 TGATATAGTGAGTGGAATCAAGAAGAAGCAAGCTCCTGGATCTGGACCTTCAAAGCCTAC 1719
Query 1620 CATTGAGACAGAAGGAGATGCAGACAACGAACAAATTCTCCCCGACTAAGCGAAG--AGA 1677
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1720 CATTGAGACAGAAGGAGATGCAGACAACGAACAAATTCTTCCCGACTAAGCGAAGGGAGA 1779
Query 1678 AACACTTTGGTCTCAGTGTGTAACTCAATCTCTGTTTTCACTTGTTTTATGGTTGCA-T- 1735
|||||||||||||||| | |||||||||||||||||||||||||| ||||||||| |
Sbjct 1780 AACACTTTGGTCTCAGCAT--AACTCAATCTCTGTTTTCACTTGTTTAATGGTTGCACTC 1837
Query 1736 T-----CT-----C--CC-TTGACATATCTTCTAATTTTGCAATTTGACTTGGTGAGATA 1782
| || | || |||||||||||| ||||| |||| |||||||||||||||||
Sbjct 1838 TTTTGGCTATTATCTTCCCTTGACATATCTTTTAATTCTGCAGTTTGACTTGGTGAGATA 1897
Query 1783 AGATTTTTGAGGGTGCGGTTTTATT-GTCTTCTTCTG-AATGTTAGCTTTTTTGAATTTT 1840
||||||| ||||||| | |||| || || || || || ||| ||||||||||||||||||
Sbjct 1898 AGATTTTCGAGGGTG-GTTTTTTTTTGT-TTGTTTTGGAATATTAGCTTTTTTGAATTTT 1955
Query 1841 CGTAGTCACTTTGTTGGTTTTAAGAGTGCTAGTTGTTATTGTCTTGTTGAAATTTCTGGC 1900
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1956 CGTAGTCACTTTGTTGGTTTTTAGAGTGCTAGTTGTTATTGTCTTTTTGAAATTTCTGGC 2015
Query 1901 ACTAGAGACtttttttAGTTTGTGACGTTTTTGTTTGAATATCATCAA--A-GTACTTCG 1957
||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||
Sbjct 2016 ACTAGAGACTTTTTT-AGTTTGTGTCGTTTTTGTTTGAATATCATCAAGTATGTACTTCA 2074
Query 1958 ACGGGATCTTAAGTTGACCGTTTAGTCTCAAAATGTGTTTTTGTTTGAACACCATTAATT 2017
|| ||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 2075 ACTGGATCTTTAGTTGACCGGTTAGTGTCAAATTGTGTTTTTGTTTGAACACCATTAATT 2134
Query 2018 GCATTTCAGACGTACGGATCGGTTTTTTAGAGTGTTGG 2055
|||||||||||||||||||| ||| |||||||| ||||
Sbjct 2135 GCATTTCAGACGTACGGATCTGTTATTTAGAGTTTTGG 2172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101856905805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5