BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489481
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26667.1 | Symbols: PYR6 | P-loop containing nucleoside trip... 1094 0.0
> AT5G26667.1 | Symbols: PYR6 | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:9275947-9277971
FORWARD LENGTH=948
Length=948
Score = 1094 bits (592), Expect = 0.0
Identities = 699/747 (94%), Gaps = 21/747 (3%)
Strand=Plus/Plus
Query 1 TATATGTATGTATAGGTCTCTGTGCATATTTATATCGTCTCCTCTTCTTCTTCTTCGATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1 TATATGTATGTATAGGTCTCTGTGCATATTTATATCGTCTCCTCTTCTTCTTCGTC---T 57
Query 61 CTCACTTTTCATCG--TCTGACCAAA-T-TCTCCGTGTTTCCTTCTCCTTCAGGTAATAT 116
||||||||||| || |||||||||| | ||||||||||||||||| |||||||| ||||
Sbjct 58 CTCACTTTTCAGCGTTTCTGACCAAATTCTCTCCGTGTTTCCTTCTGCTTCAGGTGATAT 117
Query 117 TTTAACAAA-TTGCTTTGTACCATGGGATCTGTTGATGCT--TCA---AA-TGGAAAGAA 169
||||||||| || ||| |||| |||||||||||||||||| | | || ||| |||||
Sbjct 118 TTTAACAAAGTT-CTTAGTACAATGGGATCTGTTGATGCTGCTAATGGAAGTGGGAAGAA 176
Query 170 ACCCACAGTTATTTTTGTATTTTCAATAGGTGGACCGGGAAGTGGAAAAGGTACCCAGTG 229
||| |||||||| |||| ||| | ||||| || |||||||||||||||||||||||
Sbjct 177 ACCTACAGTTATATTTG----TTC--TTGGTGGTCCAGGAAGTGGAAAAGGTACCCAGTG 230
Query 230 TGCGTATATTGTTGAACATTTTGGTTACACACATCTGAGTGCTGGAGATCTTCTTAGGGC 289
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 231 TGCTTATATTGTTGAACATTATGGTTACACACATCTGAGTGCTGGAGATCTTCTTAGAGC 290
Query 290 TGAGATTAAATCAGGTTCTGCAAATGGAACTATGATCCAGAATATGATTAAAGAGGGGAA 349
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 291 TGAGATTAAATCAGGTTCTGAAAATGGAACTATGATCCAGAATATGATTAAAGAGGGGAA 350
Query 350 GATTGTACCTTCTGAGGTTACCATCAAGCTTCTACAGAAAGCTATTCAGGAAAACGGAAA 409
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 351 GATTGTACCTTCTGAGGTTACTATCAAGCTTCTACAGAAAGCTATTCAGGAAAACGGGAA 410
Query 410 TGACAAATTCCTCATTGATGGTTTCCCTCGTAATGAGGAAAACCGAGCAGCATTTGAAAA 469
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TGACAAGTTCCTCATTGATGGTTTCCCTCGTAATGAGGAAAACCGAGCAGCATTTGAAAA 470
Query 470 AGTTACTGAGATTGAACCGAAGTTTGTCTTGTTCTTCGATTGTCCTGAGGAAGAGATGGA 529
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 471 AGTTACTGAGATTGAACCAAAGTTTGTCTTATTCTTCGATTGTCCTGAGGAAGAGATGGA 530
Query 530 GAAGCGCCTGTTGGGCCGAAACCAGGGGAGAGAGGATGACAATATTGAGACTATAAGGAA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GAAGCGCCTGTTGGGCCGAAACCAGGGGAGAGAGGATGACAATATTGAGACTATAAGGAA 590
Query 590 GCGCTTTAAGGTGTTTCTTGAATCTAGCTTACCAGTGATTCAGTACTATGAAGCTAAGGG 649
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 591 GCGCTTTAAGGTGTTTCTTGAATCTAGCTTACCAGTGATTCATTACTACGAAGCTAAGGG 650
Query 650 GAAAGTTAGGAAGATTAATGCCGCAAAGCCCATTGAAGCTGTATTCGAGGAGGTGAAGGC 709
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 651 GAAAGTTAGGAAGATTAATGCTGCAAAGCCCATTGAAGCTGTCTTCGAGGAGGTGAAGGC 710
Query 710 AATTTTTTCTCCTGAAGATGAGAAGGT 736
||||||||||||||||| |||||||||
Sbjct 711 AATTTTTTCTCCTGAAGCTGAGAAGGT 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5