BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489487
Length=1703
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26740.1 | Symbols: | Protein of unknown function (DUF300) ... 2675 0.0
AT3G05940.1 | Symbols: | Protein of unknown function (DUF300) ... 1277 0.0
> AT5G26740.1 | Symbols: | Protein of unknown function (DUF300)
| chr5:9291936-9294608 FORWARD LENGTH=1749
Length=1749
Score = 2675 bits (1448), Expect = 0.0
Identities = 1631/1718 (95%), Gaps = 18/1718 (1%)
Strand=Plus/Plus
Query 1 TTGCTTTGCTGTGATAAAGTTCTCTCCTTTCCTTTCTCAACGAAGAAGAAAGGCTTT-TA 59
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 33 TTGCTTTGCTGTGATAAAGTTCTCTCCTTTCCTTTCTAAAGGAAGAAGAAAGGCTTTATC 92
Query 60 TCTCAAAACCCTCATCCAC-AAAT-TCC-----T-CTCT--T--GAGGGTTTTTCTGTTT 107
||||||||||||||||||| |||| || | | || | ||||||||||||||||
Sbjct 93 TCTCAAAACCCTCATCCACAAAATCCCCTTTAATCCGCTAATCAGAGGGTTTTTCTGTTT 152
Query 108 CTGTTTTGCTTCGTTACTACGGTTACATTGTTCTCTTCGCCTTTCCATATCAAAGAACCC 167
||| |||||||||||||||||||||||| |||||||| ||||| || |||||||||||
Sbjct 153 TTGTGTTGCTTCGTTACTACGGTTACATTCTTCTCTTCCCCTTTTGATTTCAAAGAACCC 212
Query 168 TATTGATACCTTAAGAAGAGGAAATTTGAAGATTTGTTCACAGATCCGTCTTAGCTCTTT 227
| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||
Sbjct 213 TCTTGATACCTTAAGAAGAGGCAATTTGAAGTTTTCTTCACAGATCCGTCTTAGCTCTTT 272
Query 228 CTTGAGAATGGCGGATTTGATACCATTTTATCTGAATATTGTGGCGTTTCTATGTACTGT 287
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 CTAGAGAATGGCGGATTTGATACCATTTTATCTGAATATTGTGGCGTTTCTATGTACTGT 332
Query 288 TGGAGCTATTGCTTTGGCTATATTTCATATCTACAGGCATCTTTTGAATTACACGGAACC 347
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 333 TGGAGCTATTGCTTTGGCGATATTTCATATCTACAGGCATCTTTTGAATTACACGGAACC 392
Query 348 AACTTATCAGAGATATATTGTACGCATTATCTTTATGGTTCCGGTTTATGCCTTCATGTC 407
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 393 AACTTATCAGAGATATATTGTACGCATTATCTTCATGGTCCCGGTTTATGCCTTCATGTC 452
Query 408 ATTCTTGTCTCTTGTGTTACCGAAAAGCTCGATATATTTTGATTCCATACGAGAAGTATA 467
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 453 ATTCTTGTCTCTTGTGTTACCCAAAAGCTCGATATATTTTGATTCCATACGAGAAGTATA 512
Query 468 TGAAGCATGGGTTATTTACAATTTCCTATCGCTGTGTTTGGCATGGGTTGGAGGCCCAGG 527
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 513 TGAAGCATGGGTTATCTACAATTTTCTATCGCTGTGTTTGGCATGGGTTGGAGGCCCAGG 572
Query 528 ATCAGTAGTGCTTAGTTTGAGTGGTCGCTCTCTAAAGCCATCATGGTCTCTCATGACATG 587
||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 573 ATCAGTAGTGCTTAGTTTGAGTGGTCGTTCTTTAAAGCCATCATGGTCTCTTATGACATG 632
Query 588 TTGCTTTCCGCCTTTAACATTGGACGGGCGTTTTATTAGACGATGCAAGCAAGGTTGTCT 647
||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||
Sbjct 633 TTGCTTTCCGCCTTTAACACTGGACGGGCGATTTATTCGACGATGCAAGCAGGGTTGTCT 692
Query 648 GCAGTTTGTTATCCTGAAGCCTATTCTAGTTGCTGTCACACTTGTGCTTTATGCTAAAGG 707
||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 693 GCAATTTGTAATTCTGAAGCCTATCCTAGTTGCTGTCACACTTGTGCTTTATGCTAAAGG 752
Query 708 GAAGTACAAGGATGGGAATTTTAACCCTGATCAAGCATATCTCTATCTTACCATCATCTA 767
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 GAAGTACAAGGATGGAAATTTTAACCCTGATCAAGCATATCTCTATCTTACCATCATCTA 812
Query 768 TACCATATCCTACACAGTGGCTTTGTATGCACTTGTGCTGTTTTATATGGCATGCAGAGA 827
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 813 TACCATATCCTACACAGTGGCTTTGTACGCACTTGTGCTGTTTTATATGGCATGCAGAGA 872
Query 828 TCTACTTCAGCCATTCAATCCAGTACCAAAGTTTGTGATTATAAAGTCTGTGGTCTTTCT 887
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 873 TCTACTTCAGCCATTCAATCCAGTCCCAAAGTTTGTGATCATAAAGTCTGTGGTCTTTCT 932
Query 888 CACCTATTGGCAGGGTGTTCTCGTTTTCCTTGCTGCAAAATCTGGATTCATAAAGAGTGC 947
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 AACCTATTGGCAGGGTGTTCTCGTTTTCCTTGCTGCAAAATCTGGATTCATAAAGAGTGC 992
Query 948 AGAGGCAGCAGCTCATTTCCAAAATTTTATAATATGTGTCGAGATGCTTATTGCTGCAGC 1007
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 993 AGAGGCAGCAGCTCATTTTCAAAATTTTATAATATGTGTCGAGATGCTCATTGCTGCAGC 1052
Query 1008 ATGCCATTTCTATGCTTTTCCATACAAGGAGTATGCTGGTGCCAATGTTGGTGGATCTGG 1067
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 ATGTCATTTCTATGCTTTTCCATACAAGGAGTATGCTGGTGCCAATGTTGGTGGATCTGG 1112
Query 1068 CAGTTTCTCAGGGAGCCTATCACATGCTGTAAAACTAAATGACTTTTACCATGACACTGT 1127
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 CAGTTTCTCAGGAAGCTTATCACATGCTGTAAAACTAAATGACTTTTACCATGACACTGT 1172
Query 1128 TCACCAGTTTGCTCCTACCTATCACGATTATGTGCTCTATAACCATCAAGATGGTGGTGA 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TCACCAGTTTGCTCCTACCTATCACGATTATGTGCTCTATAACCATCAAGATGGTGGTGA 1232
Query 1188 CGAGGGAACAAAGAAGTACCGGTCGAGAACTTTTGTGCCAACAGGCCAAGAAATGGATGC 1247
|||||| |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||
Sbjct 1233 CGAGGGGACAAAGAAGTACCGATCGAGAACCTTTGTGCCAACTGGCCAAGAGATGGATGC 1292
Query 1248 AATGAGAAAGAACAAACCCGTGTATGCAAACAAGATAGATGGTGTTTCGGTTTCAAGTAG 1307
||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 1293 AATGAGAAAAAACAAACCTGTGTATGCAAACAAGATAGATGGTGTTTCAGTCTCAAGTAG 1352
Query 1308 TCTATCTTCAGAGGCAAGCTCACCAAAAAGCTCTAGCGTAACTTCTGATCCTGCACGCTC 1367
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1353 TCTATCTTCAGAGGCAAGCTCACCTAAAAGCTCCAGCGTAACTTCTGATCCTGCACGCTC 1412
Query 1368 TGATGCTGTGAAATCTTCATTGCTCGTGGATGCCTCGGATTCTCTTGATACAATGTATGA 1427
|||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 1413 TGATGCTGTGAAATCTTCCTTGCTGGTGGATGCCTCAGATTCTCTTGAAACAATGTATGA 1472
Query 1428 TATGTCGCTCATTGACATCGATCTATCTAGTTTCCCCAGCAATGTACCC-TCTGCAAGTG 1486
|||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1473 TATGTCGCTCATTGACATTGATCTATCTAGTTTCCCCAGCAATGT-CCCATCTGCAAGTG 1531
Query 1487 AAAGTGGGCCTAGATAGGAGCAGACAAGATGTAGAAATCACCATTAACAGGTACAAAACA 1546
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1532 AAAGTGGGCCTAGATAGGAGCAGAGAAAATGTAGAAATCACCATTAACAGGTACAAAACA 1591
Query 1547 TGCTCCTAATAGTTGGATTCAGGTGAATCATCTGAGGTGTGTTCTTAGTTGGAGAAGATG 1606
||||||||||||||| |||||| |||||| ||||||||||||||||||||||| | ||||
Sbjct 1592 TGCTCCTAATAGTTGTATTCAGATGAATCTTCTGAGGTGTGTTCTTAGTTGGA-A-GATG 1649
Query 1607 TTGTTAGTTGGAGACTCGAGGATAAATGAAAAA-GCTTATAAAACCATTTACCTTTTGTA 1665
|||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1650 TTGTTAGTTGGAGACTTGAGGATAAATGAAAAAAGCTTATAAACCCATTTACCTTTTGTA 1709
Query 1666 GCTTTATACAATGAGTCTTCTACTGGCATTTTCTTTTG 1703
||||||||||||||||||||||||| ||| ||||||||
Sbjct 1710 GCTTTATACAATGAGTCTTCTACTGCCATATTCTTTTG 1747
> AT3G05940.1 | Symbols: | Protein of unknown function (DUF300)
| chr3:1777364-1780254 REVERSE LENGTH=1858
Length=1858
Score = 1277 bits (691), Expect = 0.0
Identities = 1136/1348 (84%), Gaps = 41/1348 (3%)
Strand=Plus/Plus
Query 217 CTTAGCTCTTTCTTGAGAATGGCGGATTTGATA-CCATTTTATCTGAATATTGTGGCGTT 275
|||||||| || | ||||||||||||||| || ||| |||| || | |||| |||| ||
Sbjct 345 CTTAGCTC-TTGTACAGAATGGCGGATTTGTTACCCA-TTTACCTCATTATTTTGGCATT 402
Query 276 TCTATGTACTGTTGGAGCTATTGCTTTGGCTATATTTCATATCTACAGGCATCTTTTGAA 335
|||||| ||||| ||||| |||||||||||| |||| |||||||||| ||| || |||||
Sbjct 403 TCTATGCACTGTCGGAGCCATTGCTTTGGCTTTATTCCATATCTACAAGCACCTATTGAA 462
Query 336 TTACACGGAACCAACTTATCAGAGATATATTGTACGCATTATCTTTATGGTTCCGGTTTA 395
|| |||||||| | |||||||||||||||||| |||||| |||| ||||| ||||||||
Sbjct 463 CTATACGGAACCCATTTATCAGAGATATATTGTGCGCATTGTCTTCATGGTCCCGGTTTA 522
Query 396 TGCCTTCATGTCATTCTTGTCTCTTGTGTTACCGAAAAGCTCGATATATTTTGATTCCAT 455
|||||| |||||||||||| |||| || || || || ||||| ||||||||| | || ||
Sbjct 523 TGCCTTGATGTCATTCTTGGCTCTCGTTTTGCCCAAGAGCTCTATATATTTTAACTCTAT 582
Query 456 ACGAGAAGTATATGAAGCATGGGTTATTTACAATTTCCTATCGCTGTGTTTGGCATGGGT 515
|| ||||| || ||||||||||| || || ||||| ||||||||||||||||| |||||
Sbjct 583 CCGTGAAGTTTACGAAGCATGGGTGATATATAATTTTCTATCGCTGTGTTTGGCCTGGGT 642
Query 516 TGGAGGCCCAGGATCAGTAGTGCTTAGTTTGAGTGGTCGCTCTCTAAAGCCATCATGGTC 575
|||||||||||| || ||||| | ||||| | |||||||||||| |||||||| ||| |
Sbjct 643 TGGAGGCCCAGGTTCGGTAGTTATAAGTTTAACTGGTCGCTCTCTGAAGCCATCTTGG-C 701
Query 576 -TCTCATGACATGTTGCTTTCCGCCTTTAACATTGGACGGGCGTTTTATTAGACGATGCA 634
||||||||| |||||| | || || || |||| |||||||||||||||||||||||||
Sbjct 702 ATCTCATGACGTGTTGCATCCCACCACTACCATTAGACGGGCGTTTTATTAGACGATGCA 761
Query 635 AGCAAGGTTGTCTGCAGTTTGTTATCCTGAAGCCTATTCTAGTTGCTGTCACACTTGTGC 694
|||||||||||||||| |||||||| || ||||| || ||||||||||||||||||||||
Sbjct 762 AGCAAGGTTGTCTGCAATTTGTTATTCTAAAGCCAATCCTAGTTGCTGTCACACTTGTGC 821
Query 695 TTTATGCTAAAGGGAAGTACAAGGATGGGAATTTTAACCCTGATCAAGCATATCTCTATC 754
||||||| |||||||| ||||||||||| ||||||| |||||||||| | ||||||||||
Sbjct 822 TTTATGCAAAAGGGAAATACAAGGATGGAAATTTTAGCCCTGATCAATCCTATCTCTATC 881
Query 755 TTACCATCATCTATACCATATCCTACACAGTGGCTTTGTATGCACTTGTGCTGTTTTATA 814
|||||||||||||||| ||||| ||||| || ||| |||| || || || || ||||||
Sbjct 882 TTACCATCATCTATACAATATCATACACTGTAGCTCTGTACGCGCTGGTCCTCTTTTATG 941
Query 815 TGGCATGCAGAGATCTACTTCAGCCATTCAATCCAGTACCAAAGTTTGTGATTATAAAGT 874
||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 942 TGGCATGCAAAGATCTGCTTCAGCCATTCAATCCAGTCCCAAAATTTGTGATTATAAAGT 1001
Query 875 CTGTGGTCTTTCTCACCTATTGGCAGGGTGTTCTCGTTTTCCTTGCTGCAAAATCTGGAT 934
|||| |||||||| |||||||||||||||||||| ||||||||| ||| ||||||||||
Sbjct 1002 CTGTTGTCTTTCTAACCTATTGGCAGGGTGTTCTAGTTTTCCTTTTTGCTAAATCTGGAT 1061
Query 935 TCATAAAG-AGTGCAGAGGCAGCAGCTCAT-TTCCAAAATTTTATAATATGTGTCGAGAT 992
| |||| | | || ||| | |||||| | | ||||||||||||||||||||||| || ||
Sbjct 1062 TTATAAGGGA-TGAAGAAGAAGCAGCCC-TCTTCCAAAATTTTATAATATGTGTGGAAAT 1119
Query 993 GCTTATTGCTGCAGCATGC-CATTTCTATGCTTTTCCATACAAGGAGTATGCTG-GTGCC 1050
||||||||||||||| ||| ||||||||||| ||||| |||||||| ||||| | | |||
Sbjct 1120 GCTTATTGCTGCAGC-TGCTCATTTCTATGCATTTCCGTACAAGGAATATGCAGAG-GCC 1177
Query 1051 AATGTTGGTGGATCTGGCAGTTTCTCAGGGAGCCTATCACATGCTGTAAAACTAAATGAC 1110
|||||||| ||| || ||||||||||||| || || |||||||| | | ||||| ||
Sbjct 1178 AATGTTGGAGGAGCTCGCAGTTTCTCAGGAAGTCTGGCACATGCTCTTATGCTAAACGA- 1236
Query 1111 TTT-TACCATGACACTGTTCACCAGTTTGCTCCTACCTATCACGATTATGTGCTCTATAA 1169
||| |||||||| ||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 1237 TTTCTACCATGATACTGTTCACCAGTTTGCACCAACATATCACGATTATGTGCTCTATAA 1296
Query 1170 CCATCAA-GATGGTGGTGACGA-GGGAACAAAGAAGTACCG-GTCGA-GAACTTTTGTGC 1225
||| || ||||| ||||| || |||| ||| ||||||||| | | | |||| |||||||
Sbjct 1297 TCAT-AATGATGGGGGTGAGGAAGGGA-CAAGGAAGTACCGAG-C-ACGAACATTTGTGC 1352
Query 1226 CAACAGGCCAAGAAATGGATGCAATGAGAAAGAACAAACCCGTGTATGCAAACAAGATAG 1285
|||| || || ||||||||||| | ||||||||||||| | ||| || |||||||||||
Sbjct 1353 CAACTGGTCAGGAAATGGATGCTGTTAGAAAGAACAAACACATGTTTGGAAACAAGATAG 1412
Query 1286 ATGGTGTTTCGGTTTCAAGTAGTCTATCTTCAGAGGCAAGCTCACCAAAAAGCTCTAGCG 1345
||||||||||||| || ||| | ||||||||| ||||| |||| |||| |||| | |
Sbjct 1413 ATGGTGTTTCGGTCTCCAGT---CAATCTTCAGAAACAAGCACACCCAAAACCTCTGGTG 1469
Query 1346 TAACTTCTGATCCTGCACGCTCTGAT-GCTGTGAAATCTTCATTGCTCGTGGATGCCTCG 1404
|||||| ||||||||||||| |||| || |||||||||| ||||| || |||||||||
Sbjct 1470 TAACTTATGATCCTGCACGCCCTGAGAGCA-TGAAATCTTCCTTGCTGGTAGATGCCTCG 1528
Query 1405 GATTCTCTTGATACAATGTATGATATGTCGCTCATTGACATCGATCTATCTAGTTTCCCC 1464
|| ||| || ||||||||||| ||||||||||||||||| ||| |||| || | |||
Sbjct 1529 GACTCTGTTTCCACAATGTATGACATGTCGCTCATTGACATTGATATATCGAGCTACCCT 1588
Query 1465 AGCAATGTACCCTCTGCAAGTGA-AAGTGG-G--CCTAGATAG-GAG-CAGACAAGATGT 1518
||||| ||||| ||||||| | | |||||| | |||| |||| ||| || | | |||||
Sbjct 1589 AGCAAGGTACCTTCTGCAAAT-ATAAGTGGAGGACCTAAATAGTGAGTCA-A-ATGATGT 1645
Query 1519 AGAAATC-ACCATTAACAGGTA-CAAAA 1544
|||| || ||||||||||| || |||||
Sbjct 1646 AGAA-TCCACCATTAACAG-TAACAAAA 1671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84186313965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5