BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489488
Length=587
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26731.1 | Symbols: | unknown protein; Has 30201 Blast hits... 571 2e-162
> AT5G26731.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:9295574-9296380
FORWARD LENGTH=807
Length=807
Score = 571 bits (309), Expect = 2e-162
Identities = 424/476 (89%), Gaps = 21/476 (4%)
Strand=Plus/Plus
Query 2 GAGAGAGAGAAAGAGTTTAACACACGCTTCTAACCAAACTCTTCTTGACTACGGCGGTGG 61
||| |||| ||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 22 GAGCGAGACAAAGAGTTTAACACACGCTTCTAACCAAACTCTTCGTAACTACGGC---GG 78
Query 62 CGACGGCGCTAAGCGTTTTCAGGTTCCGATGAGTGAGAAGCTTGTGTTCAGAAGCAGTAG 121
|||| | |||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 79 CGAC--TG--AAGCGTTTTCAGATTCCGATGAGTGAGAAGCTTGTGTTCAGAAGCACTAG 134
Query 122 TGGTGGTGACTACTACGGTACTCATGGAGCACCATACGGAGAGTATATGGAGAAGAGACA 181
|||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct 135 TGGTGGTGACTACTACGG------T---GCACCATATGGAGAGTATATGGAGAAGAGACA 185
Query 182 GTTGTTTCTCAGAAGCTACCAGTTTTCAAGAAAACAGAGTTTCACTGAGAAAGTTTCAAG 241
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 186 GTTGTTTCTCAGAAGCTACCAGTTTTCAAGAAAACAGAGTTTCGCTGAGAAAGTTTCAAG 245
Query 242 ATCTGTTAAGAGAGTGAAACGAGTTGTGTTAACGAGATTTAGATCAGCTCGGAGGTTGAA 301
|||||||| ||||||||||||||||||||| || ||||| |||||||||| || |||||
Sbjct 246 ATCTGTTACGAGAGTGAAACGAGTTGTGTTGACAAGATTAAGATCAGCTCCGAAATTGAA 305
Query 302 ACGCGTCGTTTGGTCTCGCCTTAGAACGGCGTTTTT-CTACCGCCGGAGACGTTTTTGTA 360
||||||||||||||| || || ||| |||| ||||| |||||| ||||||||||||| |
Sbjct 306 ACGCGTCGTTTGGTCACGACTCAGATCGGC-TTTTTACTACCGTCGGAGACGTTTTTTTC 364
Query 361 GACTTCTTCACTTACACGAACCTTGTTATTGTTTCTAAATGGTTTAGAATTTTATTGTTT 420
||||||||||||||||||||||||||||||||||||||| ||||| | ||| | |||||
Sbjct 365 GACTTCTTCACTTACACGAACCTTGTTATTGTTTCTAAAAGGTTTTGGATT--AGTGTTT 422
Query 421 GTTTCGTCTTTAATTGTGTT-ATTCTTGGATTAATCACTGTATAATCTCGTTGTTT 475
|||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 423 GTTTCGTCTTTAATTGTGTTTATGCTCAAATTAATCACTGTATAATCTCGTTGTTT 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28231590614
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5