BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489490

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26720.1 | Symbols:  | unknown protein; Has 15 Blast hits to...   501    2e-141


> AT5G26720.1 | Symbols:  | unknown protein; Has 15 Blast hits 
to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:9304025-9304743 FORWARD LENGTH=719
Length=719

 Score =  501 bits (271),  Expect = 2e-141
 Identities = 384/432 (89%), Gaps = 33/432 (8%)
 Strand=Plus/Plus

Query  1    GTTTGGTTAATGCCTGGGAACCACAGTGAGATATCGTTAAATGAACAAAACAGAGTC---  57
            |||||||||||||||||||| ||||||||||| || || ||||||||||||||||||   
Sbjct  72   GTTTGGTTAATGCCTGGGAATCACAGTGAGATTTCATTGAATGAACAAAACAGAGTCGAT  131

Query  58   GATAACGATACgaagacg-a-a-gacgacaaggaagaagaagaagaagaaagaTGTAACC  114
            ||||||||||| |||||| | | |||||||||||||||||||||||||||||||||||| 
Sbjct  132  GATAACGATACCAAGACGAAGACGACGACAAGGAAGAAGAAGAAGAAGAAAGATGTAACA  191

Query  115  ATCGTTGATGATGATGATAATCAATTGGATAGCACCAATCAATTGGTAACGAAGAGTAAG  174
            |||||||||||||| ||||||||||| |||| ||||||||||||||| |  |||||||||
Sbjct  192  ATCGTTGATGATGACGATAATCAATTCGATACCACCAATCAATTGGT-A--AAGAGTAAG  248

Query  175  AATCGATTTATAGCCAAGTTTCGAAAGAAACCCAAATCGCC-AAA--A------GGGTCG  225
            ||||||||| |||  |||||||| ||||||||||||||||| |||  |      ||||||
Sbjct  249  AATCGATTTTTAGGTAAGTTTCGTAAGAAACCCAAATCGCCAAAACGATGGTCTGGGTCG  308

Query  226  CGTAAAGGTGGATGCTTTCGTGtgatgatgagacctcgaaggagagagagggatggtgat  285
            ||||||||||| |||||||  ||| |||||||||||||||||||||| | |||  | | |
Sbjct  309  CGTAAAGGTGGGTGCTTTC--GTG-TGATGAGACCTCGAAGGAGAGA-A-GGA--G-G-T  359

Query  286  gatgatgatgatgctgatTCGGTTTCGTCTCCAGTTTCTGATCCTAATGATGAAAGGTTT  345
            |||||||||  | |   |||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  GATGATGAT--T-C---TTCGGTTTCGTCTCCAGTTTCTGATCCTAATGATGAAAGGTTT  413

Query  346  AGTCATGAGATGATGAGAGTTATGTTAGAGACTAATGATTTCTGCTCTGATGAGTGTAAT  405
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  414  AGTCATGAGATGTTGAGAGTTATGTTAGAGACTAATGATTTCTGCTCTGATGAGTGTAAT  473

Query  406  CCACATCGGTGA  417
            ||||||||||||
Sbjct  474  CCACATCGGTGA  485



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19755225357


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5