BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489491
Length=2339
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26710.1 | Symbols: | Glutamyl/glutaminyl-tRNA synthetase, ... 3635 0.0
AT1G47930.1 | Symbols: | pseudogene, glutamyl-tRNA synthetase,... 555 9e-157
AT5G26700.1 | Symbols: | RmlC-like cupins superfamily protein ... 141 3e-32
> AT5G26710.1 | Symbols: | Glutamyl/glutaminyl-tRNA synthetase,
class Ic | chr5:9305513-9308440 FORWARD LENGTH=2513
Length=2513
Score = 3635 bits (1968), Expect = 0.0
Identities = 2232/2357 (95%), Gaps = 28/2357 (1%)
Strand=Plus/Plus
Query 1 TAGATCCAAAGATGGATGGGATAAAGCTCTCGTTCCCACCGGAAAGTCCACCACTTTCAG 60
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 150 TAGATCCAAAGATGGATGGGATGAAGCTTTCGTTCCCACCGGAAAGTCCACCACTTTCAG 209
Query 61 TCATCGTTGCTCTTTCTCTCTCAGCTTCTCCGGTCACTATTGATTCTTCCGCCTCTGTAA 120
|||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| ||
Sbjct 210 TCATCGTTGCTCTTTCTCTCTCAGCTTCTCCGGTGACGATTGATTCTTCCGCCGCTGCAA 269
Query 121 CCACCGTCCCTTCTTTTGTCTTCTCCGACGGGAGGAAATTGAGTGGAGCCACTGTTCTTC 180
| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 270 CAACCGTCCCTTCTTTTGTCTTCTCCGACGGGAGGAAATTGAATGGAGCCACCGTTCTTC 329
Query 181 TTCGCTATGTTGGTCGATCAGCGAATACGCTTCCTGATTTCTATGGCAACAGTGCTTTTG 240
||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct 330 TTCGCTATGTTGGTCGATCAGCGAAAAAGCTTCCTGATTTCTATGGCAACAATGCTTTTG 389
Query 241 ATTCTTCTCAGATTGATGAGTGGGTAGATTTCGCTTCTGTATTCTCTTCTGGTTCAGAGT 300
|||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct 390 ATTCTTCTCAGATTGATGAGTGGGTAGATTACGCATCTGTCTTCTCTTCTGGTTCAGAGT 449
Query 301 TTGAGAATGCTTGTGGTCGTGTTGATAAGCATCTCGAGAGTCGTACGTTTCTTGTTGGCC 360
||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 450 TTGAGAATGCTTGTGGTCGTGTTGATAAGTATCTCGAGAGTAGCACGTTTCTTGTTGGCC 509
Query 361 ATTCTCTTTCCATTGCTGATGTTGCTATTTGGTCAGCTCTTGCTGGAACTGGCCAAAGAT 420
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 510 ATTCTCTTTCCATTGCTGATGTCGCTATTTGGTCAGCTCTTGCTGGAACTGGTCAAAGAT 569
Query 421 GGGAAAGTTTGAGGAAGTCGAAAAAGTATCAGAGT-TTAGTTAGATGGTTCAATTCGATA 479
|||||||||||||||| || ||||||||||||||| || |||||||||||||||||||||
Sbjct 570 GGGAAAGTTTGAGGAAATCTAAAAAGTATCAGAGTCTT-GTTAGATGGTTCAATTCGATA 628
Query 480 TTAGACGAGTACAGTGAGCTGCTTAACAAAGTTCTAGCAACATATGTGAAGAAAAGCTCT 539
|||||||||||||||||| |||||||||| ||||||||||| ||||| |||||| | ||
Sbjct 629 TTAGACGAGTACAGTGAGGTGCTTAACAAGGTTCTAGCAACTTATGTTAAGAAAGGATCA 688
Query 540 GGGAAGCCTGTTGCTGCACCTAAGTCTAAAGACAGCCAACAAGCTTTGAAAGGAGATGCT 599
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
Sbjct 689 GGGAAGCCTGTTGCTGCACCTAAGTCTAAAGATAGCCAACAAGCTGTGAAAGGAGATGGT 748
Query 600 CAGGATAAAGGCAAACCTGAAGTGGACTTGCCGGAAGCAGAAATTGGAAAGGTTCGACTC 659
||||||||||| || ||||||||||||||||||||||| || |||||||||||| ||||
Sbjct 749 CAGGATAAAGGTAAGCCTGAAGTGGACTTGCCGGAAGCGGAGATTGGAAAGGTTAAACTC 808
Query 660 CGGTTTGCTCCAGAGCCAAGTGGTTATCTTCACATTGGACATGCTAAGGCTGCGTTGCTG 719
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 809 CGGTTTGCTCCAGAGCCAAGTGGTTATCTTCACATAGGACATGCTAAGGCTGCGTTGCTG 868
Query 720 AACAAGTATTTCGCTGAGCGTTACCAAGGGGAAGTGATTGTGCGTTTTGATGATACTAAC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 AACAAGTATTTCGCTGAGCGTTACCAAGGGGAAGTGATTGTGCGTTTTGATGATACTAAC 928
Query 780 CCTGCTAAAGAAAGCAATGAGTTTGTGGATAATCTTGTGAAGGATATTGGGACCTTGGGG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 CCTGCTAAAGAAAGCAATGAGTTTGTGGATAATCTTGTGAAGGATATTGGGACCTTGGGG 988
Query 840 ATCAAGTATGAGAAAGTGACTTACACTTCGGACTATTTTCCTGAGTTGATGGAAATGGCG 899
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 989 ATCAAGTATGAGAAAGTGACATACACTTCGGACTATTTTCCTGAATTGATGGATATGGCG 1048
Query 900 GAAAAACTGATGCGTGAGGGTAAGGCATATGTTGATGACACACCGAGGGAGCAGATGCAG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 GAAAAACTGATGCGTGAGGGTAAGGCATATGTTGATGACACACCGAGGGAGCAGATGCAG 1108
Query 960 AAAGAGAGGATGGATGGGATTGATTCGAAATGTAGGAATCATAGTGTCGATGAGAATTTG 1019
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1109 AAAGAGAGGATGGATGGGATTGATTCGAAATGTAGGAATCATAGCGTCGAGGAGAATTTG 1168
Query 1020 AAGCTATGGAAGGAAATGATTGCGGGAAGTGAGAGAGGATTACAGTGCTGCGTTCGTGGG 1079
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1169 AAGCTATGGAAGGAAATGATTGCAGGAAGTGAGAGAGGATTACAGTGCTGTGTTCGTGGG 1228
Query 1080 AAATTCAACATGCAAGATCCCAACAAAGCCATGCGTGACCCGGTTTATTATCGATGCAAC 1139
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1229 AAATTCAACATGCAAGATCCCAACAAAGCCATGCGTGACCCGGTTTATTACCGATGCAAT 1288
Query 1140 CCTATGTCTCACCACCGTATCGGAGATAAGTATAAGATATATCCAACATATGACTTTGCT 1199
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1289 CCTATGTCTCACCACCGTATCGGGGATAAGTATAAGATATATCCAACATATGACTTTGCT 1348
Query 1200 TGCCCGTTTGTTGATTCCCTTGAAGGTATAACGCATGCCCTTCGGTCTAGTGAGTATCAT 1259
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1349 TGCCCGTTTGTTGATTCCCTTGAAGGTATAACGCATGCTCTTCGGTCTAGTGAGTATCAT 1408
Query 1260 GACCGGAATGCTCAGTACTTTAAAGTTCTGGAGGACATGGGATTACGACAGGTTCAGCTT 1319
||||| ||||||||||||||||||||||||||||| |||||| | |||||||||||||||
Sbjct 1409 GACCGAAATGCTCAGTACTTTAAAGTTCTGGAGGATATGGGACTGCGACAGGTTCAGCTT 1468
Query 1320 TACGAATTCAGCCGGCTAAATCTGGTTTTCACACTTCTCAGTAAGCGCAAGCTTCTCTGG 1379
||||||||||||||| |||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 1469 TACGAATTCAGCCGGTTAAACCTAGTTTTTACACTTCTCAGTAAGCGCAAGCTTCTCTGG 1528
Query 1380 TTTGTCCAGACTGGATTGGTTGACGGGTGGGATGATCCACGCTTCCCGACAGTCCAAGGA 1439
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1529 TTTGTCCAAACTGGATTGGTTGACGGGTGGGATGATCCACGTTTCCCGACAGTCCAAGGA 1588
Query 1440 ATTGTTCGTAGAGGTTTGAAAATCGAGGCTCTGATTCAGTTCATTCTCGAGCAGGGAGCT 1499
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1589 ATTGTTCGTAGAGGTTTGAAAATCGAGGCTCTGATTCAATTCATTCTCGAGCAGGGGGCT 1648
Query 1500 TCGAAGAATCTAAATTTGATGGAATGGGACAAACTTTGGTCTATTAATAAGAGAATAATT 1559
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1649 TCGAAGAATCTAAATTTGATGGAATGGGACAAACTTTGGTCTATAAATAAGAGAATAATT 1708
Query 1560 GATCCTGTGTGCCCTAGACACACGGCTGTGATTGCAGAGCGTCGTGTACTATTTACCTTA 1619
||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 1709 GATCCTGTGTGCCCTAGACACACTGCTGTGGTTGCAGAACGTCGTGTACTATTTACCTTA 1768
Query 1620 ACAGATGGTCCTGATGAGCCGTTTGTTCGCCTGATACCAAAGCACAAGAAATTCGAAGGT 1679
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1769 ACGGATGGTCCTGATGAGCCGTTTGTTCGCATGATACCAAAGCACAAGAAATTCGAAGGT 1828
Query 1680 GCAGGAGAAAAGGCGACCACTTTCACCAAGAGCATTTGGATCGAGGAAGCTGATGCGAGT 1739
|| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1829 GCTGGAGAAAAGGCGACCACTTTCACTAAGAGCATTTGGCTCGAGGAAGCTGATGCGAGT 1888
Query 1740 GCAATATCCGTTGGTGAGGAAGTAACTTTGATGGATTGGGGAAATGCCATAGTAAAGGAA 1799
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1889 GCCATATCCGTTGGTGAGGAAGTAACTTTGATGGATTGGGGAAATGCTATCGTAAAGGAA 1948
Query 1800 ATCACAAAGGACAAGGAGGGTCGTGTCACTGCATTATCTGGCGTTCT-GAATCTCCAAGG 1858
|||||||||||| ||||||||||||||||||| |||||||| || || ||||||||||||
Sbjct 1949 ATCACAAAGGACGAGGAGGGTCGTGTCACTGCCTTATCTGGTGT-CTTGAATCTCCAAGG 2007
Query 1859 TTCTGTAAAGACTACAAAGCTAAAGCTCACATGGCTTCCCGATACCAATGAATTGGTCAA 1918
||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||
Sbjct 2008 TTCTGTAAAGACTACAAAGCTGAAGCTGACATGGCTTCCTGATACTAATGAATTGGTCAA 2067
Query 1919 TCTCACATTAACTGAGTTTGATTATTTAATCACCAAGAAGAAGCTGGAAGATGATGATGA 1978
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2068 TCTCACATTAACAGAGTTTGATTATCTAATCACCAAGAAGAAGCTGGAAGATGATGATGA 2127
Query 1979 AGTTGCTGATTTTGTGAATCCTAACACAAAGAAGGAAACTTTGGCACTTGGTGATTCTAA 2038
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2128 AGTTGCTGATTTTGTGAATCCTAACACAAAGAAGGAAACATTGGCACTTGGTGATTCGAA 2187
Query 2039 TATGAGGAATCTGAAATGTGGAGATGTGATTCAGCTTGAGAGGAAAGGCTATTTCAGATG 2098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2188 TATGAGGAATCTGAAATGTGGAGATGTGATTCAGCTTGAGAGGAAAGGCTATTTCAGATG 2247
Query 2099 TGATGTTCCATTTGTCAAATCTTCAAAGCCCATCGTCTTATTCTCGATTCCAGATGGAAG 2158
|||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2248 TGATGTGCCTTTTGTCAAATCTTCAAAGCCCATTGTCTTATTCTCCATTCCAGATGGAAG 2307
Query 2159 AGCGGCTAAGTGATGAATGAACTATTTTTGTGTTTCCCATTTTATGAAAATTGTGTTGAG 2218
||| |||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 2308 AGCCGCTAAGTGATCAATGAACTATTTTTGAGTTTCCCATTTTATGAACATTGTGTTGAG 2367
Query 2219 AA-TTTA------AG-----A---CAATGAAAAACAGAGCTCTTTTATCAGTTCTTTGCT 2263
|| ||| || | ||||||||| || |||| |||||||||||||||
Sbjct 2368 AAATTTGCTCTTTAGGTTTTAAAACAATGAAAA-CAAAGCT-TTTTATCAGTTCTTT--- 2422
Query 2264 TAATTTTTCATCTCATAATAGTTT-AAAGTTGCAAACTTTATCTTGATTCATTCTTCTTT 2322
| ||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 2423 -AGTTT--CATCTCATAATAGTTTTAAAGTTGCAAACTTTATATTGATTCATTCTTCTTT 2479
Query 2323 GCTTAGTGTTTACAATA 2339
|||||||||||||||||
Sbjct 2480 GCTTAGTGTTTACAATA 2496
> AT1G47930.1 | Symbols: | pseudogene, glutamyl-tRNA synthetase,
similar to GI:3435196 from (Arabidopsis thaliana); blastp
match of 68% identity and 4.0e-65 P-value to GP|6815089|dbj|BAA90375.1||AP001081
unnamed protein product {Oryza sativa
(japonica cultivar-group)} | chr1:17662900-17663940 FORWARD
LENGTH=1041
Length=1041
Score = 555 bits (300), Expect = 9e-157
Identities = 446/511 (87%), Gaps = 31/511 (6%)
Strand=Plus/Plus
Query 405 GGAACTGGCCAAAGATGGGAAAGTTTGAGGAAGTCGAAAAAGTATCAGAGTTTAGTTAGA 464
|||||||||||||||||||||||||||||||| ||||||||| || ||||||| ||||||
Sbjct 553 GGAACTGGCCAAAGATGGGAAAGTTTGAGGAAATCGAAAAAGGATTAGAGTTTGGTTAGA 612
Query 465 TGGTTCAATTCGATATTAGACGAGTACAGTGAGCTGCTTAACAAAGTTCTAGCAACATAT 524
||||| | ||||| ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 613 TGGTTTAGTTCGACATTAGACGAGTACAGCGAGCTGCTTAACAAGGTTCTAGCAACATAT 672
Query 525 GTGAAGAAAAGCTCTGGGAAGCCTGTTGCTGCACCTAAGTCTAAAGACAGCCAACAAGCT 584
|||||||||||||| ||||||||||| ||| | | || |||||||||||||||||||||
Sbjct 673 GTGAAGAAAAGCTCAGGGAAGCCTGTCGCT-C-C--AA-TCTAAAGACAGCCAACAAGCT 727
Query 585 T-TGAAAGGAGATGCTCAGGATAAAGGCAAACCTGAAGTGGACTTGCCGGAAGCAGAAAT 643
| |||| |||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 728 ACT-AAAGCAGATGCACAGGATAAAGGCAAACCTGAAGTGGAGTTGCCGGAAGCAGAAAT 786
Query 644 TGGAAAGGTTCGACTCCGGTTTGCTCCAGAGCCAAGTGGTTATCTTCACATTGGACATGC 703
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 787 TGGAAAGGTTCGACTTCGGTTTGCTCCAGAGCCAAGTGGTTACCTTCACATTGGACATGC 846
Query 704 TAAGGCTGCGTTGCTGAACAAGTATTTCGCTGAGCGTTACCAAGGGGAAGTGATTGTGCG 763
|||||||||||||| ||||||||||| |||||||||| |||| |
Sbjct 847 CAAGGCTGCGTTGCTAAACAAGTATTTTGCTGAGCGTTT-----------TGAT-G---- 890
Query 764 TTTTGATGATACTAACCCTGCTAAAGAAAGCAATGAGTTTGTGGATAATCTTGTGAAGGA 823
|| | ||||||||||||||||||||||||| ||| |||||||| | ||||| ||
Sbjct 891 -----AT-A--CTAACCCTGCTAAAGAAAGCAATGAATTTATGGATAATATGGTGAAAGA 942
Query 824 TATTGGGACCTTGGGGATCAAGTATGAGAAAGTGACTTACACTTCGGACTATTTTCCTGA 883
||||||||||||||||||||||||||||||| |||| | |||||| ||||| ||||||||
Sbjct 943 TATTGGGACCTTGGGGATCAAGTATGAGAAAATGACATGCACTTCAGACTACTTTCCTGA 1002
Query 884 GTTGATGGAAATGGCGGAAAAACTGATGCGT 914
||||| |||||||||||||||||||||||
Sbjct 1003 ACTGATGCAAATGGCGGAAAAACTGATGCGT 1033
> AT5G26700.1 | Symbols: | RmlC-like cupins superfamily protein
| chr5:9308290-9309625 REVERSE LENGTH=868
Length=868
Score = 141 bits (76), Expect = 3e-32
Identities = 107/120 (89%), Gaps = 9/120 (8%)
Strand=Plus/Minus
Query 2221 TTTAAGACAATGAAAAACAGAGCTCTTTTATCAGTTCTTTGCTTAATTTTTCATCTCATA 2280
||||| |||||| |||||| |||| |||||||||||| | || | ||||||||||||
Sbjct 846 TTTAAAACAATG-AAAACAAAGCT-TTTTATCAGTTC--T--TT-A-GTTTCATCTCATA 795
Query 2281 ATAG-TTTAAAGTTGCAAACTTTATCTTGATTCATTCTTCTTTGCTTAGTGTTTACAATA 2339
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 794 ATAGTTTTAAAGTTGCAAACTTTATATTGATTCATTCTTCTTTGCTTAGTGTTTACAATA 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116113860585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5